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Single-cell network analysis reveals gene expression programs for Arabidopsis root development and metabolism

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Plant Communications 2024年第8期5卷 32-49页

作者： Ershang Han Zhenxing Geng Yue Qin Yuewei Wang Shisong Ma MOE Key Laboratory for Cellular Dynamics School of Life SciencesDivision of Life Sciences and MedicineUniversity of Science and Technology of ChinaInnovation Academy for Seed DesignChinese Academy of SciencesHefei 230027China School of Data science University of Science and Technology of ChinaHefei 230027China

Single-cell RNA-sequencing datasets of Arabidopsis roots have been generated,but related comprehensive gene co-expression network analyses are *** conducted a single-cell gene co-expression network analysis with publicly available scRNA-seq datasets of Arabidopsis roots using a SingleCellGGM *** analysis identified 149 gene co-expression modules,which we considered to be gene expression programs(GEPs).By examining their spatiotemporal expression,we identified GEPs specifically expressed in major root cell types along their developmental *** GEPs define gene programs regulating root cell development at different stages and are enriched with relevant developmental *** examples,a GEP specific for the quiescent center(QC)contains 20 genes regulating QC and stem cell niche homeostasis,and four GEPs are expressed in sieve elements(SEs)from early to late developmental stages,with the early-stage GEP containing 17 known SE developmental *** also identified GEPs for metabolic pathways with cell-type-specific expression,suggesting the existence of cell-type-specific metabolism in *** the GEPs,we discovered and verified a columellaspecific gene,NRL27,as a regulator of the auxin-related root gravitropism *** analysis thus systematically reveals GEPs that regulate Arabidopsis root development and metabolism and provides ample resources for root biology studies.

关键词： single-cell RNA sequencing single-cell gene co-expression network analysis gene expression program Arabidopsis root development NRL27 gravitropism

Two-dimensional-lag complex logistic map with complex parameters and its encryption application

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Chinese Physics B 2024年第5期33卷 324-335页

作者：张芳芳武金波寇磊马凤英吴黎明张雪 School of Information and Automation Engineering Qilu University of Technology (Shandong Academy of Sciences)Jinan 250353China Institute of Oceanographic Instrumentation Qilu University of Technology (Shandong Academy of Sciences)Qingdao 266000China

With the rapid development of internet technology,security protection of information has become more and more prominent,especially information *** the great advantages of chaotic encryption,we propose a 2D-lag complex logistic map with complex parameters(2D-LCLMCP)and corresponding encryption ***,we present the model of the 2D-LCLMCP and analyze its chaotic properties and system stability through fixed points,Lyapunov exponent,bifurcation diagram,phase diagram,***,a block cipher algorithm based on the 2D-LCLMCP is proposed,the plaintext data is preprocessed using a pseudorandom sequence generated by the *** on the generalized Feistel cipher structure,a round function F is constructed using dynamic S-box and DNA encoding rules as the core of the block cipher *** generalized Feistel cipher structure consists of two F functions,four XOR operations,and one permutation operation per *** symmetric dynamic round keys that change with the plaintext are generated by the ***,experimental simulation and performance analysis tests are *** results show that the block cipher algorithm has low complexit,good diffusion and a large key *** the block length is 64 bits,only six rounds of encryption are required to provide sufficient security and robustness against cryptographic attacks.

关键词： logistic map block ciphers chaotic system encryption

Optimal parameter space for stabilizing the ferroelectric phase of Hf_(0.5)Zr_(0.5)O_(2) thin films under strain and electric fields

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Chinese Physics B 2024年第7期33卷 509-517页

作者：王侣锦王聪周霖蔚周谐宇潘宇浩吴幸季威 Beijing Key Laboratory of Optoelectronic Functional Materials&Micro-Nano Devices Department of PhysicsRenmin University of ChinaBeijing 100872China Key Laboratory of Quantum State Construction and Manipulation(Ministry of Education) Renmin University of ChinaBeijing 100872China In Situ Devices Center School of Integrated CircuitsEast China Normal UniversityShanghai 200241China

Hafnia-based ferroelectric materials, like Hf_(0.5)Zr_(0.5)O_(2)(HZO), have received tremendous attention owing to their potentials for building ultra-thin ferroelectric devices. The orthorhombic(O)-phase of HZO is ferroelectric but metastable in its bulk form under ambient conditions, which poses a considerable challenge to maintaining the operation performance of HZO-based ferroelectric devices. Here, we theoretically addressed this issue that provides parameter spaces for stabilizing the O-phase of HZO thin-films under various conditions. Three mechanisms were found to be capable of lowering the relative energy of the O-phase, namely, more significant surface-bulk portion of(111) surfaces, compressive c-axis strain,and positive electric fields. Considering these mechanisms, we plotted two ternary phase diagrams for HZO thin-films where the strain was applied along the in-plane uniaxial and biaxial, respectively. These diagrams indicate the O-phase could be stabilized by solely shrinking the film-thickness below 12.26 nm, ascribed to its lower surface energies. All these results shed considerable light on designing more robust and higher-performance ferroelectric devices.

关键词： Hf_(0.5)Zr_(0.5)O_(2) orthorhombic phase ferroelectric films phase stability thickness-dependent ternary phase diagrams

Aspartoacylase suppresses prostate cancer progression by blocking LYN activation

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Military Medical research 2024年第2期11卷 180-205页

作者： Hong Weng Kang-Ping Xiong Wang Wang Kai-Yu Qian Shuai Yuan Gang Wang Fang Yu Jun Luo Meng‑Xin Lu Zhong‑Hua Yang Tao Liu Xing Huang Hang Zheng Xing-Huan Wang Department of Urology Zhongnan Hospital of Wuhan UniversityWuhan 430071China Center for Evidence‑Based and Translational Medicine Zhongnan Hospital of Wuhan UniversityWuhan 430071China Department of Biological Repositories Zhongnan Hospital of Wuhan UniversityWuhan 430071China Hubei Key Laboratory of Tumor Biological Behaviors Wuhan 430071China Department of Pathology Zhongnan Hospital of Wuhan UniversityWuhan 430071China Center for Pathology and Molecular Diagnostics Wuhan UniversityWuhan 430071China Wuhan research Center for Infectious Diseases and Cancer Chinese Academy of Medical SciencesWuhan 430071China

Background:Globally,despite prostate cancer(PCa)representing second most prevalent malignancy in male,the precise molecular mechanisms implicated in its pathogenesis remain ***,elucidating the key molecular regulators that govern disease progression could substantially contribute to the establishment of novel therapeutic strategies,ultimately advancing the management of ***:A total of 49 PCa tissues and 43 adjacent normal tissues were collected from January 2017 to December 2021 at Zhongnan Hospital of Wuhan *** advanced transcriptomic methodologies were employed to identify differentially expressed mRNAs in *** expression of aspartoacylase(ASPA)in PCa was thoroughly evaluated using quantitative real-time PCR and Western blotting *** elucidate the inhibitory role of ASPA in PCa cell proliferation and metastasis,a comprehensive set of in vitro and in vivo assays were conducted,including orthotopic and tumor-bearing mouse models(n=8 for each group).A combination of experimental approaches,such as Western blotting,luciferase assays,immunoprecipitation assays,mass spectrometry,glutathione S-transferase pulldown experiments,and rescue studies,were employed to investigate the underlying molecular mechanisms of ASPA's action in *** Student‘s t-test was employed to assess the statistical significance between two distinct groups,while one-way analysis of variance was utilized for comparisons involving more than two groups.A two-sided P<0.05 was deemed to indicate statistical ***:ASPA was identified as a novel inhibitor of PCa *** expression of ASPA was found to be significantly down-regulated in PCa tissue samples,and its decreased expression was independently associated with patients’prognosis(HR=0.60,95%CI 0.40–0.92,P=0.018).Our experiments demonstrated that modulation of ASPA activity,either through gain-or loss-of-function,led to the suppression or enhancement of PCa cell proliferation,mig

关键词： Prostate cancer Aspartoacylase LYN JNK AP-1 C-Jun Phosphorylation

Influence of self-similar stresses on scenario earthquake construction:An example along the Tanlu Fault

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science China Earth sciences 2024年第5期67卷 1687-1697页

作者： Feng HU Huajian YAO Houyun YU Zeyu LU Jieyi HOU Song LUO Zhigang SHAO Xiaofei CHEN School of Earth and Space sciences University of Science and Technology of ChinaHefei 230026China Mengcheng Geophysical National Field Scientific Observatory Hefei 230026China Department of Earth and Space science Southern University of Science and TechnologyShenzhen 518055China Institute of Earthquake Prediction China Earthquake AdministrationBeijing 100036China

As a famous deep and large fault in eastern China,the Tanlu Fault passes through Anhui,Jiangsu,and Shandong and into northeastern *** is important to improve the understanding of seismic hazard assessments in areas near *** start a scenario earthquake simulation in the M7.5 earthquake potential area of the Xinyi-Sihong segment of the Tanlu *** fault rupture length and width are constrained according to the scaling law of large intraplate earthquakes,the background normal stress is depth dependent,and the initial shear stresses are determined using trial and error by matching the earthquake *** the 120 km rupture length of the M7.5 earthquake,we compare the horizontal uniform stress model and self-similar stress perturbation *** findings reveal that the seismic source time function of the horizontal uniform stress model is similar to that of the Haskell model and that of the self-similar stress perturbation model is more similar to that of a real earthquake *** compare the dynamic rupture simulation and ground motion results under four different stress conditions and find that the shorter the characteristic length of the self-similar function is,the rougher the initial *** the M7.5earthquake with an epicenter in the vicinity of Suqian,the Xinyi-Tancheng segment,which is located in the IX-intensity zone north of the epicenter,vibrates more strongly on the northern side than on the southern side due to the influence of the lowvelocity zone and the peak slip *** response spectra analysis at stations in the study area is useful for improving the earthquake resistance capability.

关键词： Scenario earthquakes Self-similar stress Tanlu Fault Dynamic rupture Ground motion

The chemical environment and structural ordering in liquid Mg-Y-Zn system:An ab-initio molecular dynamics investigation of melt for the formation mechanism of LPSO structure

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Journal of Magnesium and Alloys 2024年第2期12卷 815-824页

作者： Tangpeng Ma Jin Wang Kaiming Cheng Chengwei Zhan Jixue Zhou Jingyu Qin Guochen Zhao Xinfang Zhang Shandong Provincial Key Laboratory of High Strength Lightweight Metallic Materials Advanced Materials InstituteQilu University of Technology(Shandong Academy of Sciences)Jinan 250014China Key Laboratory for Liquid-Solid Structural Evolution and Processing of Materials Ministry of EducationShandong UniversityJinan 250061China School of Metallurgical and Ecological Engineering University of Science and Technology BeijingBeijing 100083China

In an effort to clarify the formation mechanism of LPSO structure in Mg-Y-Zn alloy,the chemical environment and structural ordering in liquid Mg-rich Mg-Y-Zn system are investigated with the aid of ab-initio molecular dynamics *** liquid Mg-rich Mg-Y alloys,the strong Mg-Y interaction is determined,which promotes the formation of fivefold symmetric local *** Mg-Zn alloys,the weak Mg-Zn interaction results in the fivefold symmetry weakening in the liquid *** to the coexistence of Y and Zn,the strong attractive interaction is introduced in liquid Mg-Y-Zn ternary alloy,and contributes to the clustering of Mg,Y,Zn launched from *** is more,the distribution of local structures becomes closer to that in pure Mg compared with that in binary Mg-Y and Mg-Zn *** results should relate to the origins of the Y/Zn segregation zone and close-packed stacking mode in LPSO structure,which provides a new insight into the formation mechanism of LPSO structure at atomic level.

关键词： Mg-Y-Zn Chemical environment Structural ordering ab-initio molecular dynamics

Enhanced electrical performance in CaBi_(4)Ti_(4)O_(15)ceramics through synergistic chemical doping and texture engineering

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Journal of Materiomics 2024年第2期10卷 471-479页

作者： Le Zhao Guohao Li Xiao Zhai Weijie Kuai Yuzhi Zhai Gang Tian Zhigang Gai Minglei Zhao Juan Du Hongjun Zhang Limei Zheng School of Information and Automation Engineering Qilu University of Technology(Shandong Academy of Sciences)Jinan250353China School of Physics State Key Laboratory of Crystal MaterialsShandong UniversityJinan250100China Center for Optics research and Engineering(CORE) Key Laboratory of Laser and Infrared System of Ministry of EducationShandong UniversityQingdaoShandong266237China College of Materials science and Engineering Liaocheng UniversityLiaocheng252059China Functional Materials and Acoustooptic Instruments Institute School of Instrumentation Science and EngineeringHarbin Institute of TechnologyHarbin150080China

High-temperature piezoelectric materials with excellent piezoelectricity,low dielectric loss and large resistivity are highly desired for many industrial sectors such as aerospace,aircraft and nuclear *** a synergistic design strategy combining microstructural texture and chemical doping is employed to optimize CaBi 4Ti 4O15(CBT)ceramics with bismuth layer *** textured microstructure with an orientation factor of 80%e82%has been successfully achieved by the spark plasma sintering ***,by doping MnO_(2),both advantages of hard doping and sintering aids are used to obtain the excellent electrical performance of d_(33)=27.3 pC/N,tandδ-0.1%,Q_(31)~2,307 and electrical re-sistivityρ~6.5×10^(10)Ω·*** to 600℃,the 0.2%(in mass)Mn doped CBT ceramics still exhibit high performance of d_(33)=26.4 pC/N,r~1.5×10^(6)Ω·cm and tandδ~15.8%,keeping at an applicable level,thus the upper-temperature limit for practical application of the CBT ceramics is greatly *** work paves a new way for developing and fabricating excellent high-temperature piezoelectric materials.

关键词： CaBi_(4)Ti_(4)O_(15) Piezoelectricity Mechanical quality factor Resistivity

Analytical modeling of piezoelectric meta-beams with unidirectional circuit for broadband vibration attenuation

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Applied Mathematics and Mechanics(English Edition) 2024年第10期45卷 1665-1684页

作者： Jiawei MAO Hao GAO Junzhe ZHU Penglin GAO Yegao QU State Key Laboratory of Mechanical System and Vibration Shanghai Jiao Tong UniversityShanghai 200240China

Broadband vibration attenuation is a challenging task in engineering since it is difficult to achieve low-frequency and broadband vibration control *** solve this problem,this paper designs a piezoelectric meta-beam with unidirectional electric circuits,exhibiting promising broadband attenuation *** analytical model in a closed form for achieving the solution of unidirectional vibration transmission of the designed meta-beam is developed based on the state-space transfer function *** method can analyze the forward and backward vibration transmission of the piezoelectric meta-beam in a unified manner,providing reliable dynamics solutions of the *** analytical results indicate that the meta-beam effectively reduces the unidirectional vibration across a broad low-frequency range,which is also verified by the solutions obtained from finite element *** designed meta-beam and the proposed analytical method facilitate a comprehensive investigation into the distinctive unidirectional transmission behavior and superb broadband vibration attenuation performance.

关键词： broadband vibration attenuation efficient closed-form analytical solution electromechanical coupling piezoelectric material vibration control

From non-carbon host toward carbon-free lithium-sulfur batteries

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Nano research 2024年第3期17卷 1337-1365页

作者： Yanqi Feng Hui Liu Qiongqiong Lu School of Materials science and Engineering Shaanxi Key Laboratory of Green Preparation and Functionalization for Inorganic MaterialsShaanxi University of Science and TechnologyXi’an 710021China Institute of Materials Henan Key Laboratory of Advanced Conductor MaterialsHenan Academy of SciencesZhengzhou 450046China Leibniz Institute for Solid State and Materials research(IFW)Dresden e.V. Helmholtzstraβe 2001069 DresdenGermany School of Materials&Environment Engineering Chengdu Technological UniversityChengdu 611730China

Lithium-sulfur(Li-S)batteries with advantages of high energy densities(2600 Wh·kg^(-1)/2800 Wh·L^(-1))and sulfur abundance are regarded as promising candidates for next-generation high-energy ***,the conventional carbon host used in sulfur cathodes suffers from poor chemical adsorption towards Li-polysulfides(LPS)in liquid electrolyte and sluggish redox kinetics,leading to low capacity and rate ***,carbon host used in Li metal anode with the intrinsic property of poor lithiophilicity and high Li-nucleation barrier gives rise to uncontrollable dendrite growth and further battery ***,non-carbon hosts with chemical adsorption toward LPS and catalytic activity for accelerating LPS redox conversion as well as lithiophilic property for guiding uniform Li deposition are proposed and demonstrated a high efficiency in both sulfur cathodes and Li metal *** this review,the principle and challenges of Li-S batteries are first presented,then recent work using non-carbon hosts in Li-S batteries is summarized comprehensively,and the mechanism of non-carbon host in improving sulfur utilization and stabilizing Li metal anode is discussed in ***,remaining challenges and outlook on the implementation of non-carbon host for practical carbon-free Li-S batteries are also provided.

关键词： sulfur cathode Li metal anode polysulfides adsorption catalytic effect Li dendrite carbon-free lithium-sulfur batteries