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Chicken chromatin accessibility atlas accelerates epigenetic annotation of birds and gene fine-mapping associated with growth traits

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Zoological Research 2023年第1期44卷 53-62页

作者： xiao-ning zhu Yu-Zhe Wang Chong Li Han-Yu Wu Ran Zhang xiao-Xiang Hu State Key Laboratory of Agrobiotechnology College of Biological SciencesChina Agricultural UniversityBeijing 100193China National Research Facility for Phenotypic and Genotypic Analysis of Model Animals(Beijing) China Agricultural UniversityBeijing 100193China

The development of epigenetic maps, such as the ENCODE project in humans, provides resources for gene regulation studies and a reference for research of disease-related regulatory elements. However,epigenetic information, such as a bird-specific chromatin accessibility atlas, is currently lacking for the thousands of bird species currently *** major genomic difference between birds and mammals is their shorter introns and intergenic distances, which seriously hinders the use of humans and mice as a reference for studying the function of important regulatory regions in birds. In this study, using chicken as a model bird species, we systematically compiled a chicken chromatin accessibility atlas using 53 Assay of Transposase Accessible Chromatin sequencing(ATAC-seq)samples across 11 tissues. An average of 50 ?796open chromatin regions were identified per sample,cumulatively accounting for 20.36% of the chicken genome. Tissue specificity was largely reflected by differences in intergenic and intronic peaks, with specific functional regulation achieved by two mechanisms: recruitment of several sequence-specific transcription factors and direct regulation of adjacent functional genes. By integrating data from genome-wide association studies, our results suggest that chicken body weight is driven by different regulatory variants active in growth-relevant tissues. We propose CAB39L(active in the duodenum), RCBTB1(muscle and liver), and novel long non-coding RNA ENSGALG00000053256(bone) as candidate genes regulating chicken body weight. Overall, this study demonstrates the value of epigenetic data in fine-mapping functional variants and provides a compendium of resources for further research on the epigenetics and evolution of birds and mammals.

关键词： Chicken Chromatin accessibility atlas ATAC-seq Tissue-specific OCRs GWAS Growth traits

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Machine Learning-Based Research on Tensile Strength of SiC-Reinforced Magnesium Matrix Composites via Stir Casting

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Acta Metallurgica Sinica(English Letters) 2024年第3期37卷 453-466页

作者： Zhihong zhu Wenhang ning Xuanyang Niu Yuhong Zhao Beijing Advanced Innovation Center for Materials Genome Engineering University of Science and Technology BeijingBeijing 100083China School of Materials Science and Engineering Collaborative Innovation Center of Ministry of Education and Shanxi Province for High-Performance Al/Mg Alloy MaterialsNorth University of ChinaTaiyuan 030051China Institute of Materials Intelligent Technology Liaoning Academy of MaterialsShenyang 110004China

SiC is the most common reinforcement in magnesium matrix composites,and the tensile strength of SiC-reinforced magnesium matrix composites is closely related to the distribution of *** a uniform distribution of SiC requires fine control over the parameters of SiC and the processing and preparation ***,due to the numerous adjustable parameters,using traditional experimental methods requires a considerable amount of experimentation to obtain a uniformly distributed composite ***,this study adopts a machine learning approach to explore the tensile strength of SiC-reinforced magnesium matrix composites in the mechanical stirring casting *** analyzing the influence of SiC parameters and processing parameters on composite material performance,we have established an effective predictive ***,six different machine learning regression models have been developed to predict the tensile strength of SiC-reinforced magnesium matrix *** validation and comparison,our models demonstrate good accuracy and reliability in predicting the tensile strength of the composite *** research findings indicate that hot extrusion treatment,SiC content,and stirring time have a significant impact on the tensile strength.

关键词： Machine learning Stirring casting Magnesium matrix composite Tensile strength

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Volume-averaged modeling of multiphase solidification with equiaxed crystal sedimentation in a steel ingot

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China Foundry 2024年第3期21卷 229-238页

作者： xiao-lei zhu Shuang Cao Rui Guan Ji Yang Zhe ning Xin-gang Ai Sheng-li Li Xin-cheng Miao The key Laboratory of Material Forming and Structure Property Control Anshan 114051LiaoningChina State Key Laboratory of Metal Material for Marine Equipment and Application Anshan 114009LiaoningChina School of Materials and Metallurgy University of Science and Technology LiaoningAnshan 114051LiaoningChina

Macrosegregation is a critical factor that limits the mechanical properties of *** impact of equiaxed crystal sedimentation on macrosegregation has been extensively studied,as it plays a significant role in determining the distribution of alloying elements and impurities within a *** improve macrosegregation in steel connecting shafts,a multiphase solidification model that couples melt flow,heat transfer,microstructure evolution,and solute transport was established based on the volume-averaged Eulerian-Eulerian *** this model,the effects of liquid phase,equiaxed crystals,columnar dendrites,and columnar-to-equiaxed transition(CET)during solidification and evolution of microstructure can be considered *** sedimentation of equiaxed crystals contributes to negative macrosegregation,where regions between columnar dendrites and equiaxed crystals undergo significant A-type positive macrosegregation due to the ***,noticeable positive macrosegregation occurs in the area of final solidification in the *** improvement in macrosegregation is beneficial for enhancing the mechanical properties of connecting *** mitigate the thermal convection of molten steel resulting from excessive superheating,reducing the superheating during casting without employing external fields or altering the design of the ingot mold is indeed an effective approach to control macrosegregation.

关键词： ingot casting multiphase solidification model equiaxed crystal sedimentation microstructure macrosegregation

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Structure of the mantle transition zone in the central and western parts of the North China Craton using the receiver function 3D Kirchhoff migration method

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Science China Earth Sciences 2024年第9期67卷 2783-2795页

作者： Min zhu Qingju WU Jieyuan ning Ruiqing ZHANG Institute of Geophysics China Earthquake AdministrationBeijing 100081China Institute of Theoretical and Applied Geophysics Peking UniversityBeijing 100871China

Using data from the regional broadband dense temporary array deployed by the ChinArray project,we applied the three-dimensional(3D)Kirchhoff migration method of the teleseismic P-wave receiver function to investigate discontinuity structures of the mantle transition zone(MTZ)in the central and western parts of the North China Craton(NCC)using a highresolution 3D velocity model of the East Asian *** results show that the 410-km discontinuity beneath the Datong Volcano is depressed by~10 km,indicating the presence of a high-temperature anomaly near the depth of 410 km,which is likely related to small-scale mantle upwelling caused by the dehydration of the stagnant Pacific Plate in the *** upwelling of hot material provides a heat source for surface magmatic *** the Bohai Bay Basin,significant subsidence of the 660-km discontinuity is observed,and the transition zone here is extensively ***’s suggested that the anomalies in this region are related to the stagnation of the Pacific slab in the *** the thickness of the transition zone west of the North-South Gravity Lineament appears normal,we propose that the subducting front of the Pacific slab did not cross the gravity lineament in the *** comparison,the small-scale subsidence of the 660-km discontinuity and the thickening of the MTZ observed north of the Hannuoba Volcano likely indicate that the slab crossed the gravity lineament at its turning point and remained in the ***,a local thickening of the MTZ is observed in the Dabie orogenic belt of the Qinling *** is believed to be a combined effect of lithospheric delamination into the transition zone in the lower Yangtze region and the stagnation of the Pacific Plate.

关键词： North China Craton Mantle transition zone Receiver function migration Datong Volcano

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Phosphine-Catalyzed [4+3] Annulation Reaction of Indole Derivatives with MBH Carbonates:A Facile Access to Indole-1,2-fused 1,4-Diazepinones and Azepines

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Chinese Journal of Chemistry 2024年第3期42卷 271-275页

作者： Yannan zhu Haoran Jiang Yi-ning Wang Faculty of Chemistry and Chemical Engineering Yancheng Institute of TechnologyYanchengJiangsu224051 China

A phosphine-catalyzed [4+3] annulation between dinucleophilic indole derivatives and Morita−Baylis−Hillman (MBH) carbonates was discovered by using the N1 and N4′/C4′ nucleophilicities of the indole precursors,in which indoles act as four atom synthons. This protocol provides an efficient and facile access to indole-1,2-fused 1,4-diazepinones and azepines in good to high yields in one step,which illustrates potential synthetic utilities in drug discovery.

关键词： Phosphine catalysis [4+3]Annulation Indole derivatives Nitrogen heterocycles Organocatalysis

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CdS/LaFeO_(3) heterojunctions with improved optical properties for visible-light catalytic applications

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Journal of Rare Earths 2024年第5期42卷 879-888,I0003页

作者： Jiaqi Wei Wen zhu Xuelian Xu xiao Xu Junjiang zhu Hubei Key Laboratory of Biomass Fibers and Eco-dyeing&Finishing College of Chemistry and Chemical EngineeringWuhan Textile University ChemistryWuhan430200China

Construction of heterojunctions is a normal and effective strategy to improve the photocatalytic performances of semiconductors,through which both the lifetime and the redox ability of electrons/holes can be improved,as co mpared to the respective *** this basis,we constructed Z-scheme CdS/LaFeO_(3) heterojunctions(CdS/LFO),by in-situ growing different amounts of CdS on the surface of LaFeO_(3),for photocatalytic degradation of tetracycline hydrochloride(TC)in aqueous solution at room *** crystal structure,surface morphology and optoelectronic properties of the COS/LFO heterojunctions were systemically characterized to correlate the reaction *** tests indicate that the CdS/LFO heterojunctions exhibit promising activity for TC degradation under visible light irradiation(λ≥420 nm),with 85%TC conversion obtained at reaction time of 45 min,which is 3.4 and 1.9 times higher than that of CdS and LaFeO_(3).The CdS/LFO heterojunctions are also stable in the reaction and can be reused for four cycles with no appreciable activity *** applicability of CdS/LFO to photocatalytic degradation of organic dyes,as well as the reaction mechanism,was also explored.

关键词： LaFeO_(3) CdS Photocatalytic degradation Tetracycline hydrochloride Reaction mechanism Rare earths

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Study on Synthesis and Biological Activities of Novel Water-Soluble Metalloporphyrins

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Wuhan University Journal of Natural Sciences 2001年第4期6卷 841-845页

作者： Li Zao-ying, Zhang Yue ning, xiao Wei, zhu Xun jin,Gao Zhen ting, Liu Yi College of Chemistry and Molecular Science, Wuhan University, Wuhan, 430072, China College of Chemistry and Molecular Science Wuhan University Wuhan China

The synthesis and characterization of a series of metal porphyrins, MII(Por), {Por=dianionic of 5, 10, 15, 20-tetrakis [4-(4′-bromobutyloxy) phenyl]porphyrinato and 5, 10, 15, 20-tetrakis [4-(4′-butyloxypyridine bromide)phenyl]porphyrinato, M=Zn, Cu, Mn, Co, Ni, Ru-CO} were described. The complexes 3a-3e were prepared from the reactions of compound 2 with metal acetates in chloroform, and the treatment of 3a-3f with excess of pyridine gave corresponding complexes 4a-4f. These new compounds were identified by absorption spectroscopies,1H-NMR and elemental analyses. The results of biological activity testing for 4a-4f revealed that 4a and 4c had stronger inhibiting action on the growth metabolism ofEsche richia coli.

关键词： water soluble metalloporphyrin synthesis structure characterization biological activity testing

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Factors influencing outcomes of intra-aortic balloon counterpulsation in elderly patients

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Chinese Medical Journal 2013年第14期126卷 2632-2635页

作者： WU Xue-ping LIU Hong-wei ZHAO xiao-ning CAO Jian zhu Ping First Division of Geriatric Cardiology General Hospital of Chinese People's Liberation Army Medical School of Chinese People's Liberation Army Beijing 100853 China

Background Intra-aortic balloon counterpulsation （IABP） is a mechanical cardiac-assist device that is used for cardiac support. There are no published reports about the use of IABP in elderly Chinese patients, especially for those over 80 years old. The aim of this study was to describe the clinical outcomes, influencing factors, and complications in patients 〉80 years old and requiring IABP. Methods We performed a retrospective study of 134 consecutive patients who received IABP therapy. Based on age, we defined two groups; those 〉80 years old and those 〈80 years old. Results The overall mortality was 41.8%. Patients -〉80 years old had higher mortality rates than those 〈80 years old （47.9% vs. 30.2%）. Patients 〉80 years old had fewer successful revascularizations （45.8%） and more pulmonary infections （47.9%） than patients 〈80 years old （60.3% and 30.2%, respectively）; these differences were statistically significant. The most common non-cardiac complication was pulmonary infection. Cardiogenic shock and pulmonary infection were risk factors for all-cause, in-hospital mortality, whereas revascularization success was a negative risk factor for the -〉80 years old patients. Conclusions IABP may be successfully and safely employed in patients 〉80 years old, having severe heart disease, with few complications. Patients 〉80 years old who need IABP therapy are less likely to have a successful revascularization and are more likely to develop pulmonary infections than patients 〈80 years old.

关键词： intra-aortic balloon counterpulsation elderly outcome complication

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Health-oriented strategies are needed to optimize China’s 2025 clean air action plan

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Science Bulletin 2024年第13期69卷 2007-2008页

作者： Tao Xue ning Kang Wei Wan Tong zhu Institute of Reproductive and Child Health/National Health Commission Key Laboratory of Reproductive Health and Department of Epidemiology and Biostatistics/Ministry of Education Key Laboratory of Epidemiology of Major Diseases(PKU) School of Public HealthPeking University Health Science CentreBeijing 100191China State Environmental Protection Key Laboratory of Atmospheric Exposure and Health Risk Management Center for Environment and HealthPeking UniversityBeijing 100871China Advanced Institute of Information Technology Peking UniversityHangzhou 311215China Clean Air Asia Beijing 100600China College of Environmental Sciences and Engineering Peking UniversityBeijing 100871China

Recently,China’s State Council issued the Continuous Improvement of Air Quality Action Plan(hereafter,the third action plan),which follows the Air Pollution Prevention and Control Action Plan(2013–2017)(hereafter,the first action plan)and the Three-Year Action Plan for Winning the Blue Sky Defense Battle(2018–2020)(hereafter the second action plan).The first two action plans yielded nationwide health benefits[1–3],from improving lung function[4]to saving medical expenditures[5].Based on our previous estimates[6],due to reductions in the fine particulate matter(PM2.5)level,implementation of the first and second action plans was expected to increase life expectancy by 2.11 and 3.68 months.

关键词： action hereafter nationwide

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Carbon emission quantification and reduction in pavement use phase:A review

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Journal of Traffic and Transportation Engineering(English Edition) 2024年第1期11卷 69-91页

作者： Linjie zhu Jin Li Feipeng xiao Key Laboratory of Road and Traffic Engineering of Ministry of Education Tongji UniversityShanghai 201804China

The carbon emissions arising from road pavement infrastructures have emerged as critical issue in recent *** life cycle of a pavement can be divided into five phases,namely raw materials and production,construction,use,maintenance and end of *** the use phase generates the highest carbon emissions throughout the pavement's life cycle,it is usually neglected in most pavement life cycle assessment(LCA)studies due to its complexity and ***,this review selected 126 relevant references,focuses on quantification methods,influential factors and reduction technologies of carbon emissions in pavement use *** the carbon accounting approached,the LCA approach,remains the most widely used for evaluating the environmental impact of ***,the primary influential factors on the use phase'carbon emission include pavement-vehicle interaction primarily affected by pavement roughness,pavement albedo and climate *** influential factors above indirectly cause changes in carbon emissions by influencing the pavement performance and subsequent vehicle ***,the review surveys carbon emission reduction technologies during pavement use phase,focusing mainly on reducing pavement rolling resistance and constructing cool *** pavements and permeable pavements are the most widely used cool pavement ***,the aspects involved in this paper hold significant promise for quantifying and reducing carbon emissions in the pavement use phase.

关键词： Pavement Carbon emission Life cycle assessment Use phase Emission reduction

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