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学术界 2012年第8期 264-268页

作者： wu jun xia Jianzhong

Occurrence and possible sources of antibiotic resistance genes in seawater of the South China Sea

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Frontiers of Environmental Science & Engineering 2024年第9期18卷 27-38页

作者： Jian Lu jun wu Cui Zhang Jianhua Wang xia He CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation Yantai Institute of Coastal Zone Research(YIC)Chinese Academy of Sciences(CAS)Shandong Key Laboratory of Coastal Environmental ProcessesYICCASYantai 264003China Yantai Research Institute Harbin Engineering UniversityYantai 264006China College of Environmental Science and Engineering Guilin University of TechnologyGuilin 541006China

Antibiotic resistance genes(ARGs)might have great effect on ecological security and human *** are important reservoirs that receive tremendous amounts of pollutants ***,information on the proliferation of ARGs in seawater is still *** study performed field sampling to investigate the occurrence and distribution of ARGs in seawater of the South China Sea,which is the deepest and largest sea in *** results showed that the total absolute abundances of ARGs in seawater samples ranged from 2.1×10^(3)to 2.3×10^(4)copies/mL,with an of 5.0×10^(3)copies/mL and a range of 2.2×10^(3)–1.8×10^(4)copies/mL for those with mobile genetic elements(MGEs).Genes resistant to multidrug,aminoglycoside,tetracycline,and fluoroquinolone antibiotics accounted for 77.3%–88.6%of total ARGs in *** and Cyanobacteria represented 32.1%–56.2%and 30.4%–49.5%of microbial community,***_MIT9313 and Clade_la were the prevalent genera in seawater of the South China *** co-occurrence relationship existed among ARGs,MGEs,and *** activities had critical influence on ARGs and *** wastewater,wastewater treatment plant effluent,sewage,aquaculture tailwater,and runoff were determined as the important sources of ARGs in seawater of the South China Sea based on positive matrix factorization analysis.

关键词： The South China Sea Antibiotic resistance genes Mobile genetic element Source apportionment

Sensing Matrix Optimization for Random Stepped-Frequency Signal Based on Two-Dimensional Ambiguity Function

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Chinese Journal of Electronics 2024年第1期33卷 161-174页

作者： Mingjiu LYU Hao CHEN jun YANG xia wu Ming ZHOU xiaoyan MA Radar NCO School Air Force Early Warning Academy Department of Early Warning Technology Air Force Early Warning Academy

Compressive sensing technique has been widely applied to achieve range-Doppler reconstruction of high frequency radar by utilizing sparse random stepped-frequency(SRSF) signal, which can suppress the complex electromagnetic interference and greatly reduce the coherent processing interval. An important way to improve the performance of sparse signal reconstruction is to optimize the sensing matrix(SM). However, the existing research on the SM optimization needs to design a measurement matrix with superior performance, which needs a large amount of computation and does not consider the influence of the waveform parameters design. In order to improve the superior reconstruction performance, a novel SM optimization approach for SRSF signal is proposed by using two-dimensional ambiguity function(TDAF) in this paper. Firstly, based on the two-dimensional sparse reconstruction model of the SRSFs, the internal relationship between the waveform parameters and the SM was derived. Secondly, the SM optimization problem was directly transformed into the waveform design of SRSFs. Furthermore, on the basis of analyzing the relationship between the mutual coherence matrix of SM and the TDAF matrix of SRSFs, the purpose of optimizing the SM can be achieved by designing the TDAF of the SRSFs. Based on this analysis, a sparse waveform optimization method with joint constraints of maximum and mean sidelobes of the TDAF by using the genetic algorithm was derived. Compared with the traditional SM optimization method, our method not only avoids generating a new measurement matrix, but also further reduces the complexity of the waveform optimization. Simulation experiments verified the effectiveness of the proposed method.

关键词： Correlation Computational modeling Electromagnetic interference Optimization methods Signal reconstruction High frequency radar Sensors

Pretreating and normalizing metabolomics data for statistical analysis

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Genes & Diseases 2024年第3期11卷 188-205页

作者： jun Sun Yinglin xia Division of Gastroenterology and Hepatology Department of MedicineDepartment of Microbiology/ImmunologyUIC Cancer CenterUniversity of Illinois ChicagoJesse Brown VA Medical Center Chicago(537)ChicagoIL 60612USA Division of Gastroenterology and Hepatology Department of MedicineUniversity of Illinois ChicagoChicagoIL 60612USA

Metabolomics as a research field and a set of techniques is to study the entire small molecules in biological *** is emerging as a powerful tool generally for pre-cision ***,integration of microbiome and metabolome has revealed the mechanism and functionality of microbiome in human health and ***,metabo-lomics data are very ***/pretreating and normalizing procedures on metabolomics data are usually required before statistical *** this review article,we comprehensively review various methods that are used to preprocess and pretreat metabolo-mics data,including MS-based data and NMR-based data preprocessing,dealing with zero and/or missing values and detecting outliers,data normalization,data centering and scaling,data *** discuss the advantages and limitations of each *** choice for a suitable preprocessing method is determined by the biological hypothesis,the characteristics of the data set,and the selected statistical data analysis *** then provide the perspective of their applications in the microbiome and metabolome research.

关键词： Data centering and scaling Data normalization Data transformation Missing values MS-Baseddata preprocessing NMRData preprocessing Outliers Preprocessing/pretreatment

Prediction of a common neutralizing epitope of H5N1 avian influenza virus by in silico molecular docking

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Chinese Science Bulletin 2008年第6期53卷 868-877页

作者： YAN YuanQing LI ShaoWei YANG ChunYan LUO WenXin WANG MingQiao CHEN YiXin LUO HaiFeng wu Ting ZHANG jun xia NingShao National Institute of Diagnostics and Vaccine Development in Infectious Diseases/Key Laboratory of the Ministry of Education forCell Biology and Tumor Cell Engineering Xiamen University Xiamen 361005 China

The H5N1 avian influenza virus (AIV) has widely spread in Asia, Europe and Africa, making a large amount of economic loss. Recently, our research group has screened a common neutralizing mono- clonal antibody named 8H5, which can neutralize almost all H5 subtype AIV ever isolated so far. Obvi- ously, this monoclonal antibody would benefit for research and development of the universal AIV vac- cine and design of the drug against H5N1 AIV in high mutation rate. In this study, the homology mod- eling was applied to generate the 3D structure of 8H5 Fab fragment, and "canonical structure" method was used to define the specified loop conformation of CDR regions. The model was subjected to en- ergy minimization in cvff force field with Discovery module in Insight II program. The resulting model has correct stereochemistry as gauged from the Ramachandran plot calculation and good 3D-structure compatibility as assessed by interaction energy analysis, solvent accessible surface (SAS) analysis, and Profiles-3D approach. Furthermore, the 8H5 Fab model was subjected to docking with three H5 subtype hemagglutinin (HA) structures deposited in PDB (ID No: 1jsm, 2ibx and 2fk0) respectively. The result indicates that the three docked complexes share a common binding interface, but differ in bind- ing angle related with HA structure similarity between viral subtypes. In the light of the three HA inter- faces with structural homology analysis, the common neutralizing epitope on HA recognized by 8H5 consists of 9 incontinuous amino acid residues: Asp68, Asn72, Glu112, Lys113, Ile114, Pro118, Ser120, Tyr137, Tyr252 (numbered as for 1jsm sequence). The primary purpose of the present work is to provide some insight into structure and binding details of a common neutralizing epitope of H5N1 AIV, thereby aiding in the structure-based design of universal AIV vaccines and anti-virus therapeutic drugs.

关键词：禽流感 H5N1病毒抗原决定基红血球凝聚素

Urban water system theory and its model development and application

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Science China Earth Sciences 2024年第3期67卷 704-724页

作者： jun xia Yongyong ZHANG Dunxian SHE Shiyan ZHANG jun YANG Mingquan LV xiang ZHANG Anqi LUO Shengjun wu Yang LIU Key Laboratory of Water Cycle and Related Land Surface Processes Institute of Geographic Sciences and Natural Resources ResearchChinese Academy of SciencesBeijing 100101China State Key Laboratory of Water Resources&Hydropower Engineering Sciences Wuhan UniversityWuhan 430072China Aquatic Eco Health Group Key Laboratory of Urban Environment and HealthInstitute of Urban EnvironmentFujian Key Laboratory of Watershed EcologyChinese Academy of SciencesXiamen 361021China Chongqing Institute of Green and Intelligent Technology Chinese Academy of SciencesChongqing 400714China

The urban water system theory is an extension of the basin water system science on an urban scale, providing a new systematic solution for the unbalanced human-water relationship and severe water challenges, such as waterlogging, black and odorous water, and ecological degradation caused by urbanization. Most existing studies on urban water systems have focused on individual water cycle processes linked with water supply and sewage treatment plants, but mutual feedback between the water cycle and its associated material circulation and water ecology, as well as human processes, still needs further exploration. In this paper, the concept, theory, and technical methodology of the urban water system were developed based on the water cycle and basin water system science. The Urban Water System 5.0(UWS 5.0) model was developed by integrating the Time Variant Gain rainfall-runoff Model with Urban water system(TVGM_Urban) in different underlying surface conditions for analyzing the natural-social water cycle processes and their associated water environmental and ecological processes and the influence of multiscale sponge measures. Herein, five major simulation functions were realized: rainfall-runoff-nonpoint source pollutant load,water and pollutant transportations through the drainage network system, terminal regulation and purification, socioeconomic water cycle, and water system assessment and regulation. The location for the case study used in this paper was wuhan City. The findings showed that the entire urban water system should consider the built-up area and its associated rivers and lakes as the research object and explore the integrations among the urban natural-social water cycle and river regulations inside and outside of the city as well as the effects of socioeconomic development and sponge measures on the water quantity-quality-ecology processes. The UWS 5.0 model efficiently simulated the urban rainfall-runoff process, total nitrogen(TN) and total phosphoru

关键词： Urban water system Human-water relationship Water issue Green development Theoretical basis Mathematical model

Nuclei-rich galvanizing strategy for suppressing zinc dendrite growth

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Rare Metals 2024年第8期43卷 4016-4018页

作者： Hai-xia wu Kai-Lu Guo College of Chemistry and Chemical Engineering Henan Key Laboratory of Function-Oriented Porous MaterialsLuoyang Normal UniversityLuoyang 471934China

The uncontrolled growth of zinc dendrites on zinc anode hinders the application of zinc ion *** solve this problem,Lu's group proposed a nuclei-rich galvanizing strategy for suppressing the zinc dendrite *** allows the nuclei-rich zinc electrode to cycle steadily for1200 h and have a high Coulombic efficiency of 99.7%at15 mA·cm^(-2)with a deposited amount of 10 mAh·cm^(-2).Moreover,the Zn-MnO_(2) battery with a low N/P ratio of 1.9exhibited sustained cycling life.

关键词： cycling sustained battery

Zeolite polymer membrane as protective interface for Mg battery

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Rare Metals 2024年第9期43卷 4636-4638页

作者： Hai-xia wu Kai-Lu Guo College of Chemistry and Chemical Engineering Henan Key Laboratory of Function-Oriented Porous MaterialsLuoyang Normal UniversityLuoyang 471934China

Excessive electrolyte decomposition seriously determines the performance of high-voltage Mg batteries. In Nazar's work, the strategy using a zeolite polymer membrane as a protective interface was proposed to restrain the electrolyte decomposition. This strategy could boost Mg plating/stripping performance up to 6000 h in zeolite/Mg|zeolite/Mg symmetric cells and 91%capacity retention in zeolite/Mg||Mo_(3)S_(4)battery after 200 *** storage devices have been intensively explored because of their important roles in our daily lives [1D3].

关键词： zeolite interface electrolyte

Effects of the Rainfall-Triggered Lisse Effect on the Stability of Loess Slopes

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Journal of Earth Science 2024年第4期35卷 1254-1262页

作者： Zhizhou Yang Donghui Cheng jun xia School of Water and Environment Chang’an UniversityXi’an710054China Key Laboratory of Subsurface Hydrology and Ecological Effects in Arid Region of the Ministry of Education Chang’an UniversityXi’an710054China Key Laboratory of Eco-Hydrology and Water Security in Arid and Semi-Arid Regions of the Ministry of Water Resources Chang’an UniversityXi’an710054China Key Laboratory of Water Cycle&Related Land Surface Processes Institute of Geographic Sciences and Natural Resources ResearchChinese Academy of SciencesBeijing100101China State Key Laboratory of Water Resources&Hydropower Engineering Sciences Wuhan UniversityWuhan430000China

This paper coupled a water-air two-phase hydrodynamic(WATPH)model with the Iverson’s method to analyze the influence of the Lisse effect on the fast groundwater pressure(P_(w))response and the slope ***,the sensitivities of the driving force and loess soil parameters were *** showed that the WATPH model simulated the height and rise of the depth to the water table reasonably *** depth to water table before rainfall(H0)had a significant impact on the Lisse effect and the slope *** the H_(0) was less than approximately 1 m,the rainfall triggered a significant Lisse effect and decreased the slope factor of safety(F_(s)).When the rainfall intensity(R_(i))was higher than the saturated hydraulic conductivity(K_(s)),the Lisse effect and the F_(s) slightly changed with the increase of the R_(i),and the slope tended to be unstable with continuous *** increasing K_(s),the Lisse effect noticeably increased,and the minimum F_(s) quickly *** analysis of the normalized sensitivity coefficient revealed that H_(0) had a dramatic impact on the Lisse effect and loess slope *** different R_(i) and K_(s) values had prominent influences on the Lisse effect and slight impacts on F_(s).

关键词： Lisse effect landslides safety factor rainfall

DEM investigation of strength and critical state behaviours of granular materials under true triaxial loadings

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Particuology 2024年第2期85卷 198-212页

作者： Minyi Zhu Guobin Gong jun xia Stephen Wilkinson Department of Civil Engineering Xi'an Jiaotong-Liverpool UniversityChina Department of Civil Engineering and Industrial Design University of LiverpoolLiverpoolUK Faculty of Engineering and Information Sciences University of Wollongong in DubaiUnited Arab Emirates

This paper investigates the strength and critical state(CS)behaviours of granular materials via DEM simulations of true triaxial drained tests under three different loading modes including constant b(in-termediate stress ratio)tests with constantσ'1(major principal stress),constant p(mean pressure)and constantσ'3(minor principal stress)*** this end,a series of samples are generated with the same particle size distribution,and with the confining stresses ranging from 100 kPa to 900 *** CS is achieved for all *** the macroscopic behaviours and the microscopic behaviours are examined and compared considering different loading modes,confining stresses and intermediate stress ratios(b).The critical state lines(CSLs)are found to be unique and independent of the loading modes,but dependent on the b *** CSLs with b=0 and b=1 form the two boundaries of CSLs respectively beyond which CSLs under all other b tests cannot go *** different strength criteria are examined and compared in terms of both peak and CS *** Mohr-Coulomb strength criterion is found to be only suitable for axisymmetric loading *** Lade-Duncan criterion is only suitable for describing peak strengths,which is dependent on the loading modes and confining *** Satake criterion and Matsuoka-Nakai criterion are the more appropriate strength criteria for describing CS failures,indicating that the CS values of both the Satake parameter and the Matsuoka-Nakai parameter describe an inherent property that characterizes the CS failure for a given type of *** CS mechanical coordination number is fitted by a curved line for a given b value,which is unique regardless of the loading *** peak and CS values of both major and minor principal fabric tensors decrease with increasing b values,while they increase with increasing b values for the intermediate principal fabric tensor.

关键词： Discrete element method Intermediate stress ratio Dilation Critical state Failure criterion