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Integrative approaches for species delimitation in Ascomycota

Fungal Diversity 2021年第4期109卷 155-179页

作者： Sajeewa S.N.Maharachchikumbura Yanpeng Chen Hiran A.Ariyawansa Kevin D.Hyde Danny Haelewaters Rekhani H.Perera Milan C.Samarakoon Dhanushka N.Wanasinghe Danilo E.Bustamante Jian-Kui Liu daniel P.Lawrence Ratchadawan Cheewangkoon Marc Stadler School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Entomology and Plant Pathology Department Faculty of AgricultureChiang Mai UniversityChiang MaiThailand Department of Plant Pathology and Microbiology College of Bio-Resources and AgricultureNational Taiwan UniversityTaipei City 10617Taiwan Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Research Group Mycology Department of BiologyGhent University9000 GhentBelgium Faculty of Science University of South Bohemia37005 Ceske BudejoviceCzech Republic Center for Mountain Futures Kunming Institute of BotanyHonghe County 654400YunnanPeople’s Republic of China Instituto de Investigación Para el Desarrollo Sustentable de Ceja de Selva(INDES-CES) Universidad Nacional Toribio Rodríguez de MendozaChachapoyasAmazonasPeru Department of Civil and Environmental Engineering(FICIAM) Universidad Nacional Toribio Rodríguez de MendozaChachapoyasAmazonasPeru Department of Plant Pathology University of CaliforniaDavisDavisCAUSA Helmholtz Centre for Infection Research GmbH Department Microbial Drugs and German Centre for Infection Research(DZIF)Partner Site Hannover-Braunschweig38124 BraunschweigGermany Institute of Microbiology Technische Universität BraunschweigInhoffenstraße 738124 BraunschweigGermany

biodiversity loss from disturbances caused by human activities means that species are disappearing at an ever increasing *** high number of species that have yet to be described have generated extreme crisis to the ***,more than in any other era,effective ways to discover and delimitate species are *** paper reviews the historically fore-most approaches used to delimit species in Ascomycota,the most speciose phylum of *** include morphological,biological,and phylogenetic species *** argue that a single property to delineate species boundaries has various defects and each species concept comes with its own advantages and *** the rate of species discovery has increased because of the advancement of phylogenetic ***,traditional phylogenetic methods with few gene regions lack species-level resolution,and do not allow unambiguous *** detail the processes that affect gene tree heterogeneity,which acts as barriers to delimiting species boundaries in classical low-rank *** far,limited insights were given to the DNA-based methodologies to establish well-supported boundaries among fungal *** addition to reviewing concepts and methodologies used to delimit species,we present a case *** applied differ-ent species delimitation methods to understand species boundaries in the plant pathogenic and cryptic genus Phyllosticta(Dothideomycetes,Botryosphaeriales).Several DNA-based methods over-split the taxa while in some methods several taxa fall into a single *** problems can be resolved by using multiple loci and coalescence-based ***,we discuss integrative approaches that are crucial for understanding species boundaries within Ascomycota and provide several examples for ideal and pragmatic approaches of species delimitation.

关键词： Ascomycetes Phylogenetics Species concept Systematics

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Influence of carbon-based cathodes on biofilm composition and electrochemical performance in soil microbial fuel cells

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Environmental Science and Ecotechnology 2023年第4期16卷 106-116页

作者： Arpita Nandy daniel Farkas Belén Pepió-Tárrega Sandra Martinez-Crespiera Eduard Borràs Claudio Avignone-Rossa Mirella Di Lorenzo Department of Chemical Engineering and Centre for biosensors Bioelectronics&Biodevices(C3Bio)University of BathClaverton DownBA27AYUK Department of Microbial Sciences University of SurreyGuildfordGU27XHUK LEITAT Technological Center C/de la Innovació208225TerrassaBarcelonaSpain

Increasing energy demands and environmental pollution concerns press for sustainable and environmentally friendly *** microbial fuel cell(SMFC)technology has great potential for carbon-neutral bioenergy generation and self-powered electrochemical *** this study,an in-depth assessment on the effect of several carbon-based cathode materials on the electrochemical performance of SMFCs is provided for the first *** innovative carbon nanofibers electrode doped with Fe(CNFFe)is used as cathode material in membrane-less SMFCs,and the performance of the resulting device is compared with SMFCs implementing either Pt-doped carbon cloth(PtC),carbon cloth,or graphite felt(GF)as the *** analyses are integrated with microbial analyses to assess the impact on both electrogenesis and microbial composition of the anodic and cathodic *** results show that CNFFe and PtC generate very stable performances,with a peak power density(with respect to the cathode geometric area)of 25.5 and 30.4 mW m^(−2),*** best electrochemical performance was obtained with GF,with a peak power density of 87.3 mW m^(−2).Taxonomic profiling of the microbial communities revealed differences between anodic and cathodic *** anodes were predominantly enriched with Geobacter and Pseudomonas species,while cathodic communities were dominated by hydrogen-producing and hydrogenotrophic bacteria,indicating H_(2)cycling as a possible electron transfer *** presence of nitrate-reducing bacteria,combined with the results of cyclic voltammograms,suggests microbial nitrate reduction occurred on GF *** results of this study can contribute to the development of effective SMFC design strategies for field implementation.

关键词： Soil microbial fuel cells ORR catalyst Carbon nanofibre Microbial profiling

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Xenos peckii vision inspires an ultrathin digital camera

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Light(Science & Applications) 2018年第1期7卷 272-278页

作者： Dongmin Keum Kyung-Won Jang daniel S.Jeon Charles S.H.Hwang Elke K.Buschbeck Min H.Kim Ki-Hun Jeong Department of bio and Brain Engineering Korea Advanced Institute of Science and Technology(KAIST)291 Daehak-roYuseong-guDaejeon 34141Korea School of Computing Korea Advanced Institute of Science and Technology(KAIST)291 Daehak-roYuseong-guDaejeon 34141Korea Department of biological Sciences University of CincinnatiCincinnatiOH 45221-0006USA

Increased demand for compact devices leads to rapid development of miniaturized digital ***,conventional camera modules contain multiple lenses along the optical axis to compensate for optical aberrations that introduce technical challenges in reducing the total thickness of the camera ***,we report an ultrathin digital camera inspired by the vision principle of Xenos peckii,an endoparasite of paper *** male Xenos peckii has an unusual visual system that exhibits distinct benefits for high resolution and high sensitivity,unlike the compound eyes found in most insects and some *** biologically inspired camera features a sandwiched configuration of concave microprisms,microlenses,and pinhole arrays on a flat image *** camera shows a field-of-view(FOV)of 68 degrees with a diameter of 3.4mm and a total track length of *** biologically inspired camera offers a new opportunity for developing ultrathin cameras in medical,industrial,and military fields.

关键词： camera sandwich digital

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Agro-pedological Assessment of the Traditional Yuanyang Rice Terraces of Yunnan Province, China

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Journal of Resources and Ecology 2011年第4期2卷 353-361页

作者： Gilles COLINET Keiko KOULOS 吴伯志李永梅 daniel LACROIX1 苏友波 Jean CHAPELLE Michael A. FULLEN Trevor HOCKING Laurent BOCK 列日大学让布鲁农业与生物技术学院云南农业大学昆明650201 伍尔弗汉普顿大学

As a contribution to a long-term evaluation of the sustainability of agro-ecosystems in the Yuanyang rice terraces, this paper reviews the bio-physical environment of the terraced landscape in a small catchment around Qingkou village and assesses soil fertility in the village crop growing area. A soil- landscape organization pattern was developed using a geomorphopedological approach. Anthropogenic, climatic and topographic factors were identified as the main soil forming factors. Soil capability and associated edaphic constraints were assessed and the main soil types were identified and classified using FAO protocols. Spatial patterns of soil fertility appear quite homogeneous. Soils are acid and cation exchange capacity and nutrient reserves are generally low. The agro-ecosystem has largely been developed by the Hani population. This agro-ecosystem has succeeded in maintaining a relatively dynamic nutrient circulation system. Current research is focusing on：（i） the evaluation of the representativeness of the studied area compared to the whole terraced system in the Yuanyang terraced landscape; （ii） measurements of nutrients flows at the field scale; （iii） the effects of soil properties on crop yields; and （iv） up-scaling field levels results to larger spatial units.

关键词： terraced paddy fields geomorphopedological approach soil fertility diagnosis Yuanyang rice terraces sustainable agriculture

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Epidemiological and Histological Profile of Cervical Cancer in Cameroon: About 2078 Cases

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Open Journal of Obstetrics and Gynecology 2016年第4期6卷 232-239页

作者： Engbang Ndamba Jean Paul Tchente Nguefack Charlotte Owona Manga Léon Jules Simo Godefroy Essam Sime Jean daniel Elono Fouda Andrée Michelle Essame Oyono Jean Louis Hasigov Alan Faculty of Medicine and Pharmaceutical Sciences The University of Douala Douala Cameroon Laquintinie Hospital of Douala Douala Cameroon North-Ossetian State Medical Academy Vladikavkaz Russia Douala General Hospital Douala Cameroon bio-Medical and Cancer Center of Bafoussam Bafoussam Cameroon Maroua Regional Hospital Maroua Cameroon Faculty of Medicine and biomedical Sciences The University of Yaoundé I Yaoundé Cameroon Yaounde University Health Center Yaoundé Cameroon

Objective: To describe the epidemiological and histological aspects of cervical cancer in Cameroon. Materials and Methods: It was a descriptive retrospective study carried out over a period of 10 years (2005-2014), on malignant tumors of the cervix observed at the laboratory of Anatomic Pathology in four regions (Center, Littoral, West, South-west). The studied parameters were frequency, age, sex, localization, histological type and the immuno-histochemical aspects. Results: A total of 2078 cases with an annual frequency of 20.78 cases were registered;the peak was reached in 2010 with 304 cases (14.62%). Cervical cancer was the main genital cancer affecting women with a percentage of 82.26%. The average age of the patients was 52.33 ± 12. 80 years old, with extremes from 22 to 93 years old. The age group from 40 to 59 had more than half of the cases, with 1094 cases (52.65%). The major histological types recorded were squamous cell cancer with 1687 cases (81.51%) and adenocarcinoma with 269 cases (12.95%). Conclusion: Cervical cancer is the chief genital cancer affecting female genital organs. The predominant histological types are squamous cell cancers.

关键词： Cancer Cervix Epidemiology Histopathology Cameroon

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Microfabricated intracortical extracellular matrix-microelectrodes for improving neural interfaces

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Microsystems & Nanoengineering 2018年第1期4卷 141-155页

作者： Wen Shen Suradip Das Flavia Vitale Andrew Richardson Akshay Ananthakrishnan Laura A.Struzyna daniel P.Brown Naixin Song Murari Ramkumar Timothy Lucas DKacy Cullen Brian Litt Mark G.Allen Krishna P.Singh Center for Nanotechnology University of PennsylvaniaPhiladelphiaPA 19104USA Department of Neurosurgery Perelman School of MedicineUniversity of PennsylvaniaPhiladelphiaPA 19104USA Department of Neurology Perelman School of MedicineUniversity of PennsylvaniaPhiladelphiaPA 19104USA Department of Mechanical Engineering and Applied Mechanics School of Engineering and Applied ScienceUniversity of PennsylvaniaPhiladelphiaPA 19104USA Department of bioengineering School of Engineering and Applied ScienceUniversity of PennsylvaniaPhiladelphiaPA 19104USA Department of Electrical and Systems Engineering School of Engineering and Applied ScienceUniversity of PennsylvaniaPhiladelphiaPA 19104USA Department of Materials Science and Engineering School of Engineering and Applied ScienceUniversity of PennsylvaniaPhiladelphiaPA 19104USA Present address:Department of Mechanical and Aerospace Engineering University of Texas at ArlingtonArlingtonTX 76019USA

Intracortical neural microelectrodes,which can directly interface with local neural microcircuits with high spatial and temporal resolution,are critical for neuroscience research,emerging clinical applications,and brain computer interfaces(BCI).However,clinical applications of these devices remain limited mostly by their inability to mitigate inflammatory reactions and support dense neuronal survival at their *** we report the development of microelectrodes primarily composed of extracellular matrix(ECM)proteins,which act as a bio-compatible and an electrochemical interface between the microelectrodes and physiological *** ECM-microelectrodes are batch fabricated using a novel combination of micro-transfer-molding and excimer laser micromachining to exhibit final dimensions comparable to those of commercial silicon-based *** are further integrated with a removable insertion stent which aids in intracortical *** from electrochemical models and in vivo recordings from the rat’s cortex indicate that ECM encapsulations have no significant effect on the electrochemical impedance characteristics of ECM-microelectrodes at neurologically relevant ***-microelectrodes are found to support a dense layer of neuronal somata and neurites on the electrode surface with high neuronal viability and exhibited markedly diminished neuroinflammation and glial scarring in early chronic experiments in rats.

关键词： markedly neural matrix

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Expert consensus on difficult airway assessment

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Hepatobiliary Surgery and Nutrition 2023年第4期12卷 545-566页

作者： Ming Xia Wuhua Ma Mingzhang Zuo Xiaoming Deng Fushan Xue Denise Battaglini Vivek Aggarwal Giustino Varrassi Vladimir Cerny Ida Di Giacinto Rita Cataldo Daqing Ma Toru Yamamoto Martina Rekatsina Alessandro De Cassai Andrea Carsetti Marvin G.Chang Edwin Seet daniel P.Davis Michael G.Irwin Yuguang Huang Hong Jiang Department of Anesthesiology Shanghai Ninth People’s HospitalShanghai Jiao Tong University School of MedicineShanghaiChina Department of Anesthesiology The First Affiliated Hospital of Guangzhou University of Chinese MedicineGuangzhouChina Department of Anaesthesiology Beijing HospitalNational Center of GerontologyInstitute of Geriatric MedicineChinese Academy of Medical ScienceBeijingChina Department of Anesthesiology Plastic Surgery HospitalCAMS and PUMCBeijingChina Department of Anesthesiology Beijing Friendship HospitalCapital Medical UniversityBeijingChina Anesthesia and Intensive Care San Martino Policlinico HospitalIRCCS for Oncology and NeuroscienceGenoaItaly Department of Conservative Dentistry&Endodontics Jamia Millia IslamiaNew DelhiIndia Paolo Procacci Foundation RomaItaly Department of Anaesthesiology and Intensive Care Medicine University Hospital Hradec KraloveHradec KraloveCzech Republic Unit of Anesthesia and Intensive Care Mazzoni HospitalAscoli PicenoItaly Unit of Anaesthesia Intensive Care and Pain ManagementDepartment of MedicineUniversitàCampus Bio-Medico of RomeRomaItaly Division of Anaesthetics Pain Medicine&Intensive CareDepartment of Surgery&CancerFaculty of MedicineImperial College Londonand Chelsea and Westminster HospitalLondonUK Division of Dental Anesthesiology Graduate School of Medicine and Dental SciencesNiigata UniversityNiigataJapan Department of Anaesthesiology National and Kapodistrian University of AthensAthensGreece Institute of Anesthesia and Intensive Care Unit University Hospital of PaduaPaduaItaly Department of biomedical Sciences and Public Health UniversitàPolitecnica delle MarcheAnconaItaly Anesthesia and Intensive Care Unit Azienda Ospedaliero Universitaria delle MarcheAnconaItaly Department of Anesthesia Critical Careand Pain MedicineMassachusetts General HospitalBostonMAUSA Lee Kong Chian School of Medicine Nanyang Technological UniversitySingaporeSingapore Department of Anaesthesia Yong Loo Lin School of Medic

Background:Identifying a potentially difficult airway is crucial both in anaesthesia in the operating room(OR)and non-operation room *** are no guidelines or expert consensus focused on the assessment of the difficult airway before,so this expert consensus is developed to provide guidance for airway assessment,making this process more standardized and accurate to reduce airway-related complications and improve ***:Seven members from the Airway Management Group of the Chinese Society of Anaesthesiology(CSA)met to discuss the first draft and then this was sent to 15 international experts for review,comment,and *** Grading of Recommendations,Assessment,Development and Evaluation(GRADE)is used to determine the level of evidence and grade the strength of *** recommendations were revised through a three-round Delphi survey from ***:This expert consensus provides a comprehensive approach to airway assessment based on the medical history,physical examination,comprehensive scores,imaging,and new developments including transnasal endoscopy,virtual laryngoscopy,and 3D *** addition,this consensus also reviews some new technologies currently under development such as prediction from facial images and voice information with the aim of proposing new research directions for the assessment of difficult ***:This consensus applies to anesthesiologists,critical care,and emergency physicians refining the preoperative airway assessment and preparing an appropriate intubation strategy for patients with a potentially difficult airway.

关键词： Expert consensus difficult airway airway management

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finDr:A web server for in silico D-peptide ligand identification

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Synthetic and Systems biotechnology 2021年第4期6卷 402-413页

作者： Helena Engel Felix Guischard Fabian Krause Janina Nandy Paulina Kaas Nico Hofflin Maja Kohn Normann Kilb Karsten Voigt Steffen Wolf Tahira Aslan Fabian Baezner Salom´e Hahne Carolin Ruckes Joshua Weygant Alisa Zinina Emir Bora Akmeriç Enoch B.Antwi Dennis Dombrovskij Philipp Franke Klara L.Lesch Niklas Vesper daniel Weis Nicole Gensch Barbara Di Ventura Mehmet Ali Oztürk Signalling Research Centres bioSS and CIBSS University of FreiburgSchanzlestr.1879104FreiburgGermany Institute of biology III Faculty of BiologyUniversity of FreiburgSchanzlestr.179104FreiburgGermany Institute of biology II Faculty of BiologyUniversity of FreiburgSchanzlestr.179104FreiburgGermany AG Roth-Lab for MicroarrayCopying ZBSA-Centre for Biological Systems AnalysisUniversity of FreiburgHabsburgerstrasse 4979104FreiburgGermany biomolecular Dynamics Institute of PhysicsUniversity of FreiburgHermann-Herder-Strasse 3a79104FreiburgGermany Core Facility Signalling Factory Centre for Biological Signaling Studies(BIOSS)University of FreiburgSchanzlestr.1879104FreiburgGermany Spemann Graduate School of biology and Medicine(SGBM) University of FreiburgAlbertstraße 19A79104FreiburgGermany Internal Medicine IV Department of MedicineMedical CenterUniversity of FreiburgHugstetter Straße 5579106FreiburgGermany Institute for biochemistry University of FreiburgAlbertstr.2179104FreiburgGermany

In the rapidly expanding field of peptide therapeutics,the short in vivo half-life of peptides represents a considerable limitation for drug action.D-peptides,consisting entirely of the dextrorotatory enantiomers of naturally occurring levorotatory amino acids(AAs),do not suffer from these shortcomings as they are intrinsically resistant to proteolytic degradation,resulting in a favourable pharmacokinetic *** experimentally identify D-peptide binders to interesting therapeutic targets,so-called mirror-image phage display is typically performed,whereby the target is synthesized in D-form and L-peptide binders are screened as in conventional phage *** technique is extremely powerful,but it requires the synthesis of the target in D-form,which is challenging for large *** we present finDr,a novel web server for the computational identification and optimization of D-peptide ligands to any protein structure(https://***/).finDr performs molecular docking to virtually screen a library of helical 12-mer peptides extracted from the RCSB Protein Data Bank(PDB)for their ability to bind to the *** a separate,heuristic approach to search the chemical space of 12-mer peptides,finDr executes a customizable evolutionary algorithm(EA)for the de novo identification or optimization of D-peptide *** a proof of principle,we demonstrate the validity of our approach to predict optimal binders to the pharmacologically relevant target phenol soluble modulin alpha 3(PSMα3),a toxin of methicillin-resistant Staphylococcus aureus(MRSA).We validate the predictions using in vitro binding assays,supporting the success of this *** to conventional methods,finDr provides a low cost and easy-to-use alternative for the identification of D-peptide ligands against protein targets of choice without size *** believe finDr will facilitate D-peptide discovery with implications in biotechnology and biomedicine.

关键词： D-peptide Web server Evolutionary algorithm Peptide design Molecular docking Mirror-image phage display

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伊森伯格管理学院商业创新中心

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城市环境设计 2019年第2期118卷 54-61页

作者： Alice Cladet Amina Blacksher Barbara Stallone Beat Schenk Cheyenne Vandevoorde daniel Kidd Davide Maggio Deborah Campbell Denys Kozak Derek Wong Domenic Schmid Douglass Alligood Elena Bresciani Emily Mohr Fabian Lorenz Francesca Portesine Ibrahim Salman Jan Leenknegt Justyna Mydlak Kai-Uwe Bergmann Kristoffer Negendahl Ku Hun Chung Linda Halim Lucas Hong Manon Otto Maria Eugenia Dominguez Mustafa Khan Nicolas Gustin Pei Pei Yang Peter Lee Seoyoung Shin Simon Lee Terrence Chew Tianqi Zhang tore Banke Yehezkiel Wiliardy Yixin Li Max Touhey Laurian Ghinitoiu 曲鸿

这座有着铜质外观的商业创新中心坐落于马萨诸塞大学阿默斯特分校的核心地带,是由BIG建筑事务所和建筑师Goody Clancy共同设计的。它的建成为这所全美排名前30的商学院增加了70000平方英尺(约6503平方米)的学习合作和社交的空间。新的... 详细信息

这座有着铜质外观的商业创新中心坐落于马萨诸塞大学阿默斯特分校的核心地带,是由BIG建筑事务所和建筑师Goody Clancy共同设计的。它的建成为这所全美排名前30的商学院增加了70000平方英尺(约6503平方米)的学习合作和社交的空间。新的扩建和部分翻新使伊森伯格管理学院现有的空间扩大了近一倍,为学院过去十

关键词：建筑事务所阿默斯特商业创新

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Hydrothermal Alteration of Diatomite for Removal of Aqueous Cu^2＋, Pb^2＋ and Zn^2＋

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材料科学与工程（中英文B版） 2012年第10期2卷 523-533页

作者： daniel Hollen Dietmar Klammer Ilse Letofsky-Papst Martin Dietzel Institute of Applied Geoscienees Graz University of Technology 8010 Graz Austria Institute for Electron Microscopy and Fine Structure Research Graz University of Technolog. 8010 Graz Austria

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