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Analysis of genetic relationship in mutant silkworm strains of Bom-byx mori using inter simple sequence repeat (ISSR) markers

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Journal of Genetics and Genomics 2008年第5期35卷 291-297页

作者： Dhanikachalam Velu Kangayam M. Ponnuvel Murugiah Muthulakshmi Randhir K. Sinha syed M.H. qadri Biotechnology Laboratory Central Sericultural Germplasm Resources Centre Hosur-635109 Tamil Nadu India

Amplified inter simple sequence repeats （ISSR） markers were used to determine genetic relationships among mutant silkworm strains of Bombyx mori. Fifteen ISSR primers containing simple sequence repeat （SSR） motifs were used in this study. A total of 113 markers were produced among 20 mutant strains, of which 73.45% were found to be polymorphic. In selected mutant genetic stocks, the average number of observed allele was （1.7080 ± 0.4567）, effective alleles （1.5194 ± 0.3950） and genetic diversity （Ht）（0.2901 ± 0.0415）. The dendrogram produced using the unweighted pair group method with arithmetic means （UPGMA） and cluster analysis made using Nei＇s genetic distance resulted in the formation of one major group containing 6 groups separated 20 mutant silkworm strains. Therefore, ISSR amplification is a valuable method for determining the genetic variability among mutant silkworm strains. This efficient molecular marker would be useful for characterizing a considerable number of silkworm strains maintained at the germplasm center.

关键词： genetic diversity Bombyx mori mutant strains ISSR

Cartesian Product Based Transfer Learning Implementation for Brain Tumor Classification

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Computers, Materials & Continua 2022年第11期73卷 4369-4392页

作者： Irfan Ahmed Usmani Muhammad Tahir qadri Razia Zia Asif Aziz Farheen Saeed Electronic Engineering Department Sir Syed University of Engineering&TechnologyKarachi75300Pakistan Department of Computer Science Bahria University Karachi CampusKarachi75260Pakistan Christus Trinity Clinic TexasUSA

Knowledge-based transfer learning techniques have shown good performance for brain tumor classification,especially with small ***,to obtain an optimized model for targeted brain tumor classification,it is challenging to select a pre-trained deep learning(DL)model,optimal values of hyperparameters,and optimization algorithm(solver).This paper first presents a brief review of recent literature related to brain tumor ***,a robust framework for implementing the transfer learning technique is *** the proposed framework,a Cartesian product matrix is generated to determine the optimal values of the two important hyperparameters:batch size and learning *** extensive exercise consisting of 435 simulations for 11 state-of-the-art pre-trained DL models was performed using 16 paired hyperparameters from the Cartesian product matrix to input the model with the three most popular solvers(stochastic gradient descent with momentum(SGDM),adaptive moment estimation(ADAM),and root mean squared propagation(RMSProp)).The 16 pairs were formed using individual hyperparameter values taken from literature,which generally addressed only one hyperparameter for optimization,rather than making a grid for a particular *** proposed framework was assessed using a multi-class publicly available dataset consisting of glioma,meningioma,and pituitary *** assessment shows that ResNet18 outperforms all other models in terms of accuracy,precision,specificity,and recall(sensitivity).The results are also compared with existing state-of-the-art research work that used the same *** comparison was mainly based on performance metric“accuracy”with support of three other parameters“precision,”“recall,”and“specificity.”The comparison shows that the transfer learning technique,implemented through our proposed framework for brain tumor classification,outperformed all existing *** the best of our knowledge,the proposed framework is a

关键词： Deep transfer learning Cartesian product hyperparameter optimization magnetic resonance imaging(MRI) brain tumor classification

Characterization of optimal resting tension in human pulmonary arteries

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World Journal of Cardiology 2016年第9期8卷 553-558页

作者： Azar Hussain Robert T Bennett Mubarak A Chaudhry syed S qadri Mike Cowen Alyn H Morice Mahmoud Loubani Department of Cardiothoracic Surgery Castle Hill Hospital Centre for Cardiovascular and Metabolic Research Hull York Medical SchoolCastle Hill Hospital

AIM To determine the optimum resting tension(ORT) for in vitro human pulmonary artery(PA) ring *** Pulmonary arteries were dissected from disease free sections of the resected lung in the operating theatre and tissue samples were directly sent to the laboratory in Krebs-Henseleit solution(Krebs).The pulmonary arteries were then cut into 2 mm long *** rings were mounted in 25 m L organ baths or 8 m L myograph chambers containing Krebs compound(37 ℃,bubbled with 21% O_2:5% CO_2) to measure changes in isometric *** resting tension was set at 1-gram force(gf) with vessels being left static to equilibrate for duration of one *** contractile reactions to 40 mmol/L KCl were obtained from a resting tension of 1 *** reactions to 40 mmol/L KCl were then obtained from stepwise increases in resting tension(1.2,1.4,1.6,1.8 and 2.0 gf).RESULTS Twenty PA rings of internal diameter between 2-4 mmwere prepared from 4 *** human PA rings incrementing the tension during rest stance by 0.6 gf,up to 1.6 gf significantly augmented the 40 mmol/L KCl stimulated *** enhancement of active tension by 0.4 gf,up to 2.0 gf mitigate the 40 mmol/L KCl stimulated *** Myograph and the organ bath demonstrated identical conclusions,supporting that the radial optimal resting tension for human PA ring was 1.61 *** The radial optimal resting tension in our experiment is 1.61 gf(15.78 m N) for human PA rings.

关键词： Pulmonary hypertension Pulmonary artery Optimal resting tension Pulmonary artery rings Human

Deposition of In2-xFexO3 Films by Ultrafast Microwave Heating Technique

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材料科学与工程（中英文A版） 2011年第6期1卷 869-871页

作者： syed B. qadri Charbel Fahed Nadeemullah A. Mahadik Heungsoo Kim Michael Osofsky Mulpuri V.Rao US Naval Research Laboratory Washington DC 20375 NRC/NRL Postoctoral Fellow Electrical and Computer Engineering George Mason University Fairfax Virginia 22030

Differential effects of atrial and brain natriuretic peptides on human pulmonary artery:An in vitro study

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World Journal of Cardiology 2019年第10期11卷 236-243页

作者： Azar Hussain Robert T Bennett Zaheer Tahir Emmanuel Isaac Mubarak A Chaudhry syed S qadri Mahmoud Loubani Alyn H Morice Department of Cardiothoracic Surgery Castle Hill HospitalCottingham HU165JQUnited Kingdom Centre for Cardiovascular and Metabolic Research Hull York Medical SchoolCastle Hill HospitalCottingham HU165JQUnited Kingdom

BACKGROUND The prevalence of cardiovascular diseases,especially heart failure,continues to rise *** heart failure,increasing levels of circulating atrial natriuretic peptide(ANP)and brain natriuretic peptide(BNP)are associated with a worsening of heart failure and a poor *** To test whether a high concentration of BNP would inhibit relaxation to *** Pulmonary arteries were dissected from disease-free areas of lung resection,as well as pulmonary artery rings of internal diameter 2.5–3.5 mm and 2 mm long,were *** artery rings were mounted in a multiwire myograph,and a basal tension of 1.61gf was *** equilibration for 60 min,rings were pre-constricted with 11.21μmol/L PGF2α(EC80),and concentration response curves were constructed to vasodilators by cumulative addition to the myograph *** Although both ANP and BNP were found to vasodilate the pulmonary vessels,ANP is more potent than ***50 of ANP and BNP were 8.96±0.21 and 7.54±0.18,respectively,and the maximum efficacy(Emax)for ANP and BNP was-2.03 gf and-0.24 gf,*** addition of BNP,the Emax of ANP reduced from-0.96gf to-0.675gf(P=0.28).CONCLUSION BNP could be acting as a partial agonist in small human pulmonary arteries,and inhibits relaxation to *** levels of circulating BNP could be responsible for the worsening of decompensated heart *** finding could also explain the disappointing results seen in clinical trials of ANP and BNP analogues for the treatment of heart failure.

关键词： Heart failure Atrial natriuretic peptide Brain natriuretic peptide In-vitro Humans

In VitroPlant Regeneration of Morus indicaL. cv. V1 Using Leaf Explant

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American Journal of Plant Sciences 2013年第10期4卷 2001-2005页

作者： Melur Kodandaram Raghunath Karaba N. Nataraja Jyothi Sainath Meghana Radha Sivarajan Sajeevan Mala V. Rajan syed Mashayak Hussaine qadri Central Sericultural Research and Training Institute Srirampura Mysore India Department of Crop Physiology University of Agricultural Sciences GKVK Bangalore India.

Adventitious bud induction and plantlet regeneration were studied in a popular mulberry variety, V1 using leaf as an explant. Fully expanded leaf explants were cultured on Murashige and Skoog’s (MS) medium supplemented with thidiazuron (TDZ) (0.5-4.0 mg/l), 6-benzylaminopurine (BAP) (0.5-2.0 mg/l), indole acetic acid (IAA) (2.0 mg/l), gibberlic acid (GA3) (1.0-2.0 mg/l) silver nitrate (AgNO3) (2.0 mg/l) and different carbon sources such as sucrose, fructose and glucose (10%-30%) either individually or in combination to induce adventitious buds and regeneration. The highest percentage (63%) of adventitious bud formation and regeneration (68%) was achieved in the medium containing MS with TDZ (1.0 mg/l), IAA (2.0 mg/l) and AgNO3 (2.0 mg/l). For subsequent regeneration and shoot elongation the MS medium having BAP (1.0 mg/l), GA3 (2.0 mg/l) and AgNO3 (2.0 mg/l) was found to be suitable. Amongst the carbon sources tested, the most suitable carbon source was found to be sucrose (3%) followed by fructose (2%) for adventitious bud formation. Excised in vitro shoots were rooted (60%-80%) in half strength MS medium supplemented with indole-3-butyric acid (1.0 mg/l). The well rooted plantlets were hardened in soil + sand + farm yard manure (FYM) mixture with a success rate of 70%-90%. Since in vitro regeneration is highly genotype-dependent in mulberry, the standardized protocol can be effectively used for further improvement of this leading genotype using biotechnological approaches.

关键词： In Vitro Regeneration Adventitious Bud Thidiazuron Mulberry cv. V1 Carbon Source

Variability, heritability and genetic advance in mulberry (Morusspp.) for growth and yield attributes

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Agricultural Sciences 2012年第2期3卷 208-213页

作者： Subramaniam Gandhi Doss Shyama Prasad Chakraborti Sukhen Roychowdhuri Nirvan Kumar Das Kunjupillai Vijayan Partha Dev Ghosh Mala V. Rajan syed Mashayak Hussaini qadri Central Sericultural Research and Training Institute Berhampore India Central Sericultural Research and Training Institute Mysore India Central Silk Board BTM Layout Bangalore India Department of Botany University of Kalyani Kalyani India Research Extension Center Nabagram India

Genetic improvement of crop plants is brought about by manipulating the genetic makeup through systematic breeding techniques or by employing modern biotechnological tools. Application of systematic breeding technique to a large extent is decided by the knowledge on the genetic control of the traits. Keeping this in view, nine mulberry genotypes were evaluated for different growth and yield attributing traits viz., number of tillers (NT), plant height (PH), total shoot length (TSL), nodal distance (ND), leaf fall % (LF), number of leaves/plant (NLP), weight of 100 fresh leaves (WFL), weight of 100 dry leaves (WDL), single leaf area (LA), leaf area index (LAI), aboveground biomass (AGB), leaf harvest index (LHI) and leaf yield (LY) and estimated the magnitude of genotypic and phenotypic variation, heritability, genetic advance and correlation coefficients. The broad sense heritability for these traits ranged from 63.942 (WFL) to 13.261 (PH). High heritability coupled with high genetic advance was recorded for the characters WFL, LF, LA, WDL and LY suggesting the higher genetic control over these traits. Leaf yield showed significantly positive phenotypic and genotypic correlations with all other growth traits except PH and LF. Leaf fall had significant negative correlations with all the highly heritable yield attributes viz., ND (-0.379), WDL (-0.225), LA (-0.346), LAI (-0.233) at 1% level and AGB (-0.148), LHI (-0.122) and LY (-0.146) at 5% level. Likewise, it showed positive correlations with TSL (0.558), NLP (0.264) and PH (0.221). Since mulberry is mainly cultivated for leaf yield, genotypes having higher WFL, LA, WDL and LY and less LF must be given importance during parent selection to evolve high yielding varieties with less leaf fall across different seasons in mulberry.

关键词： Variability Heritability Genetic Advance Yield Attributes Low Leaf Senescence