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Common bean SNP alleles and candidate genes affecting photosynthesis under contrasting water regimes

Horticulture Research 2021年第1期8卷 110-123页

作者： susana trindade leitao Maria Catarina Bicho Priscila Pereira Maria Joao Paulo Marcos Malosetti susana de Sousa Araujo Fred van Eeuwijk Maria Carlota Vaz Patto Instituto de Tecnologia Quimica e Biológica Antonio Xavier Universidade Nova de LisboaOeirasPortugal Wageningen University&Research WageningenThe Netherlands Present address:Instituto Superior de Agronomia Universidade de LisboaLisboaPortugal Present address:Nunhems Vegetable Seeds NunhemThe Netherlands Present address:Association BLC3-Technology and Innovation Campus Centre Bio R&D UnitOliveira do HospitalLisboaPortugal

Water deficit is a major worldwide constraint to common bean(Phaseolus vulgaris L.)production,being photosynthesis one of the most affected physiological *** gain insights into the genetic basis of the photosynthetic response of common bean under water-limited conditions,a collection of 158 Portuguese accessions was grown under both well-watered and water-deficit *** gas-exchange parameters were measured and photosynthetic pigments *** same collection was genotyped using SNP arrays,and SNP-trait associations tested considering a linear mixed model accounting for the genetic relatedness among accessions.A total of 133 SNP-trait associations were identified for net Co 2 assimilation rate,transpiration rate,stomatal conductance,and chlorophylls a and b,carotenes,and xanthophyll *** of these associations were detected under water-deficit and 43 under well-watered conditions,with only two associations common to both *** candidate genes revealed that stomatal regulation,protein translocation across membranes,redox mechanisms,hormone,and osmotic stress signaling were the most relevant processes involved in common bean response to water-limited *** candidates are now preferential targets for common bean water-deficit-tolerance ***,new sources of water-deficit tolerance of Andean,Mesoamerican,and admixed origin were detected as accessions valuable for breeding,and not yet explored.

关键词： breeding water assimilation

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First genetic linkage map of Lathyrus cicera based on RNA sequencing-derived markers: Key tool for genetic mapping of disease resistance

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Horticulture Research 2018年第1期5卷 345-358页

作者： Carmen Santos Nuno Felipe Almeida Mara Lisa Alves Ralf Horres Nicolas Krezdorn susana trindade leitão Thaïs Aznar-Fernández Björn Rotter Peter Winter Diego Rubiales Maria Carlota Vaz Patto Instituto de Tecnologia Química e Biológica António Xavier Universidade Nova de LisboaAv.da RepúblicaOeiras2780-157Portugal GenXPro GmbH Frankfurt am MainD-60438Germany Institute for Sustainable Agriculture CSICCórdobaE-14004Spain

The Lathyrus cicera transcriptome was analysed in response to rust(Uromyces pisi)infection to develop novel molecular breeding tools with potential for genetic mapping of resistance in this robust orphan legume *** RNA-seq library each was generated from control and rust-inoculated leaves from two *** genotypes with contrasting quantitative resistance,de novo assembled into contigs and sequence polymorphisms were *** toto,19,224 SNPs differentiate the susceptible from the partially resistant genotype’s *** addition,we developed and tested 341 expressed E-SSR markers from the contigs,of which 60.7%varied between the two *** genotypes.A first *** linkage map was created using part of the developed markers in a RIL population from the cross of the two *** map contains 307 markers,covered 724.2 cM and is organised in 7 major and 2 minor linkage groups,with an average mapping interval of 2.4 *** genic markers also enabled us to compare their position in *** map with the physical position of the same markers mapped on Medicago truncatula genome,highlighting a high macrosyntenic conservation between both *** study provides a large new set of genic polymorphic molecular markers with potential for mapping rust *** represents the first step towards genomics-assisted precision breeding in ***.

关键词： breeding linkage resistance

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