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Genome-wide SNP markers provided insights into the reproductive strategy and genetic diversity of the green tide causative species Ulva prolifera in China

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Journal of Oceanology and Limnology 2024年第2期42卷 533-543页

作者： song sun Weiwei MA Nan WANG song FENG Yan sun CAS Key Laboratory of Marine Ecology and Environmental Sciences Institute of OceanologyChinese Academy of SciencesQingdao 266071China Laboratory for Marine Ecology and Environmental Science Laoshan LaboratoryQingdao 266237China Jiaozhou Bay Marine Ecosystem Research Station Chinese Academy of SciencesQingdao 266071China University of Chinese Academy of Sciences Beijing 100049China

Ulva prolifera is the causative species of the annually occurring large-scale green tides in China since *** specific biological features on reproductivity strategies,as well as intra-species genetic diversity,are still largely unknown,especially at the genome level,despite their importance in understanding the formation and outbreak of massive green *** the present study,the restriction site-associated DNA genotyping approach(2b-RAD)was adopted to identify the genome-wide single-nucleotide polymorphisms(SNPs)of 54 individual thalli including samples collected from Subei Shoal in 2019 and Qingdao coast from 2019 to *** genotype results revealed that most of the thalli in 2019 and 2020 were haploid gametophytes,while only half of the thalli were gametophytes in 2021,indicating flexibility in the reproductive strategies for the formation of the green tides among different years and the dominance of asexual and vegetative reproductive mode for the floating ***,population analysis was conducted,and it revealed a very low genetic diversity among samples from Subei Shoal and the Qingdao coast in the same year and a higher divergence among samples in different *** results showed the efficiency of 2b-RAD in the exploration of SNPs in *** and provided the first genome-wide scale evidence for the origin of the large-scale green tides on the Qingdao *** study improved our understanding of the reproductive strategy and genetic diversity of the green tide causative species and will help further reveal the biological causes of the green tide in China.

关键词： green tide Ulva prolifera 2b-RAD single-nucleotide polymorphism(SNP) reproductive strategy genetic diversity

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Spatial patterns of zooplankton abundance,biovolume,and size structure in response to environmental variables:a case study in the Yellow Sea and East China Sea

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Journal of Oceanology and Limnology 2024年第1期42卷 113-127页

作者： song sun Haochen XIAN Xiaoxia sun Mingliang ZHU Mengtan LIU Key Laboratory of Marine Ecology and Environmental Sciences Institute of OceanologyChinese Academy of SciencesQingdao 266071China Jiaozhou Bay National Marine Ecosystem Research Station Institute of OceanologyChinese Academy of SciencesQingdao 266071China University of Chinese Academy of Sciences Beijing 100049China Laboratory for Marine Ecology and Environmental Science Laoshan LaboratoryQingdao 266237China

The Yellow Sea(YS)and East China Sea(ECS)are highly dynamic marginal seas of the northwestern Pacific *** gain an in-depth understanding of zooplankton community structure,zooplankton abundance,biovolume,and size structure in summer 2017 in the YS and ECS were assessed using ZooScan imaging *** abundance and biovolume ranged 2.94–1187.14 inds./m^(3)and 3.13–3438.51 mm^(3)/m^(3),*** on the biovolume data of the categorized size classes of 26 identified taxonomic groups,the zooplankton community was classified into five groups,and each group was coupled with distinctive oceanographic *** the influence of the Yellow Sea Cold Water Mass,the Yellow Sea offshore group featured the lowest bottom temperature(10.84±3.42℃)and the most abundant Calanoids(mainly in the 2–3 mm size class).In the Yellow Sea inshore group,Hydrozoans showed the largest biovolume and dominated in the 3–4-mm and>5-mm size *** East China Sea offshore group,which was affected by the Kuroshio Branch Current,featured high temperature and salinity,and the lowest bottom dissolved oxygen(2.58±0.5 mg/L).The lowest values of zooplankton abundance and biovolume in the East China Sea offshore group might be attributed to the bottom dissolved oxygen *** East China Sea inshore group,which was mainly influenced by the Zhejiang-Fujian Coastal Current and Changjiang Diluted Water,was characterized by high chlorophyll a and the largest biovolume of carnivorous Siphonophores(280.82±303.37 mm^(3)/m^(3)).The Changjiang River estuary offshore group showed the most abundant Cyclopoids,which might be associated with the less turbid water mass in this *** temperature was considered the most important factor in shaping the size compositions of Calanoids in different groups.

关键词： zooplankton size structure ZooScan Yellow Sea East China Sea

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Experimental clearance rate and intraguild predation of jellyfish Cyanea nozakii

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Journal of Oceanology and Limnology 2024年第1期42卷 128-140页

作者： Pengpeng WANG Fang ZHANG song sun Shuguo LÜ CAS Key Laboratory of Marine Ecology and Environmental Sciences Institute of OceanologyChinese Academy of SciencesQingdao 266071China Laboratory for Marine Ecology and Environmental Sciences Pilot National Laboratory for Marine Science and Technology(Qingdao)Qingdao 266237China University of Chinese Academy of Sciences Beijing 100049China Jiaozhou Bay Marine Ecosystem Research Station Chinese Academy of SciencesQingdao 266071China Center for Ocean Mega-Science Chinese Academy of SciencesQingdao 266071China Institute of Marine Ecology and Environment Hainan Academy of Environmental SciencesHaikou 570100China

Cyanea nozakii,a common jellyfish distributed in offshore China,has a complex trophic relationship with other zooplankton ***,few studies have reported the predation rates and prey selection patterns of *** medusae on different prey *** is also lacking on the intraguild predation of Aurelia coerulea(another common bloom jellyfish in offshore China)by *** address the knowledge gaps,the clearance rates of *** for different prey items,including copepods(small1000μm),fish larvae,and gelatinous prey(hydromedusae,*** ephyrae,and chaetognaths),were *** influence of predator size on the clearance rate was also ***,we examined the intraguild predation of *** on *** *** clearance rates of *** varied widely with prey organisms,being independent of prey *** organisms,except for chaetognaths,were captured with considerably high efficiency,followed by fish larvae and copepods,indicating the preferential prey selection of gelatinous organisms by *** clearance rate increased linearly with the cross-sectional area of *** size in medusae may,to some extents,underpin their capacity to capture more prey by increasing the encounter rate and capture success through *** preyed voraciously on *** in high feeding efficiency,but the clearance rate decreased with increasing ***(as prey)*** phenomenon of intraguild predation suggests a speculative hypothesis of potential population regulation of *** by *** information regarding the feeding ecology of *** reported in this study is important for understanding plankton dynamics in marine ecosystems with extensive occurrences of this jellyfish.

关键词： Scyphomedusae predation rate gelatinous organisms prey selection feeding mechanism

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Distribution,abundance,and realized niches of meroplankton by two different mesh size nets during spring 2017 in the Southern Yellow Sea,China

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Journal of Oceanology and Limnology 2024年第5期42卷 1540-1556页

作者： Shuangyan ZHANG Fang ZHANG Xiaoxia sun Dongjie GUO Jianfeng WANG song sun CAS Key Laboratory of Marine Ecology and Environmental Sciences Institute of OceanologyChinese Academy of SciencesQingdao 266071China Laboratory for Marine Ecology and Environmental Science Qingdao Marine Science and Technology CenterQingdao 266237China University of Chinese Academy of Sciences Beijing 100049China Jiaozhou Bay Marine Ecosystem Research Station Institute of OceanologyChinese Academy of SciencesQingdao 266071China CAS Key Laboratory of Ocean Circulation and Waves Institute of OceanologyChinese Academy of SciencesQingdao 266071China

Meroplankton play a crucial role in both benthic and pelagic *** quantitative research on estimating the quantities of meroplankton groups is both underrepresented and *** investigate and evaluate the influence of varying mesh sizes(505 and 160μm)on the sampling efficiency of meroplankton,we conducted an examination using two commonly used plankton nets during the spring season in the Southern Yellow Sea(SYS).Our study revealed a total of 12 meroplankton groups,with 9 groups identified in the 505-μm mesh nets and 11 groups in the 160-μm mesh *** results demonstrated the superior collection efficiency of the 160-μm net compared to the 505-μm net across the majority of meroplankton ***,we focused on exploring the abundance,distribution patterns,and realized niches of meroplankton collected by the two mesh size nets,and observed that the distribution of meroplankton closely resembled the distribution of possible benthic adults in the *** analysis of the six dominant groups collected in the 160-μm mesh nets revealed that seawater temperature and salinity emerged as the key environmental factors driving variations in meroplankton abundance within the *** study also found that a smaller mesh size net does not necessarily capture meroplankton more comprehensively.A comprehensive understanding of the ecological characteristics of meroplankton requires the combination of two types of nets for *** research significantly advances our understanding of the quantification,abundance,and distribution of meroplankton,serving as a valuable contribution to the broader landscape of detailed quantitative meroplankton studies.

关键词： meroplankton plankton net mesh size collection efficiency distribution characteristic realized niches

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Transformer-Based Cloud Detection Method for High-Resolution Remote Sensing Imagery

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Computers, Materials & Continua 2024年第7期80卷 661-678页

作者： Haotang Tan song sun Tian Cheng Xiyuan Shu Key Laboratory of GIS Application Research School of Geography and TourismChongqing Normal UniversityChongqing401331China College of Computer and Information Science Chongqing Normal UniversityChongqing401331China Department of Military Installations Army Logistics AcademyChongqing401331China

Cloud detection from satellite and drone imagery is crucial for applications such as weather forecasting and *** the limitations of conventional convolutional neural networks,we propose an innovative transformer-based *** method leverages transformers,which are adept at processing data sequences,to enhance cloud detection ***,we introduce a Cyclic Refinement Architecture that improves the resolution and quality of feature extraction,thereby aiding in the retention of critical details often lost during cloud *** extensive experimental validation shows that our approach significantly outperforms established models,excelling in high-resolution feature extraction and precise cloud *** integrating Positional Visual Transformers(PVT)with this architecture,our method advances high-resolution feature delineation and segmentation ***,our research offers a novel perspective for surmounting traditional challenges in cloud detection and contributes to the advancement of precise and dependable image analysis across various domains.

关键词： Cloud transformer image segmentation remotely sensed imagery pyramid vision transformer

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Parent-offspring relationship recognition based on SSR and mtDNA confirmed resource supplement effect of Fenneropenaeus chinensis release

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Acta Oceanologica Sinica 2024年第2期43卷 156-160页

作者： song sun Ding Lyu Xianshi Jin Xiujuan Shan Weiji Wang Key Laboratory of Sustainable Development of Marine Fisheries Ministry of Agriculture and Rural AffairsYellow Sea Fisheries Research InstituteChinese Academy of Fishery SciencesQingdao 266071China Function Laboratory for Marine Fisheries Science and Food Production Processes Pilot National Laboratory for Marine Science and Technology(Qingdao)Qingdao 266237China

The resource of Fenneropenaeus chinensis has declined sharply due to excessive fishing intensity,ecological changes and *** order to supplement the fishing yield and restore resources of ***,the relevant authorities have carried out the activities of stock enhancement and *** can increase biomass and recover ***,compared with increasing biomass,there were still few reports on its effect on the recovery of *** recovery is a process related to whether the released individuals can form a reproductive *** to now,there has been a lack of evidence whether the released *** can complete the entire life history,and form reproduction *** this study,gravid female shrimp after spawning migration were captured from coastal waters of Haiyang,Qingdao,and Yellow *** identifying parentage relationships using simple sequence repeat(SSR)and mtDNA haplotype,it was finally confirmed that there were eight released individuals in the recapture *** was confirmed for the first time that at least part of the released *** can complete overwintering and reproductive migration,and maintain the migration habits as their wild ***,we infered that the released shrimp can reproduce under natural conditions,these *** can form reproductive populations theoretically if without human *** results indicated that enhancenment and release activities have a positive effect on resource recovery.

关键词： Fenneropenaeus chinensis release simple sequence repeat(SSR) mtDNA resource supplement

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A Security Trade-Off Scheme of Anomaly Detection System in IoT to Defend against Data-Tampering Attacks

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Computers, Materials & Continua 2024年第3期78卷 4049-4069页

作者： Bing Liu Zhe Zhang Shengrong Hu song sun Dapeng Liu Zhenyu Qiu Zhejiang Institute of Industry and Information Technology Hangzhou310000China Digital Economy Development Center of Zhejiang Hangzhou310000China College of Computer and Information Science Chongqing Normal UniversityChongqing401331China Bank of Suzhou Suzhou215000China Hangzhou Hikvision Digital Technology Co. Ltd.Hangzhou310051China

Internet of Things(IoT)is vulnerable to data-tampering(DT)*** to resource limitations,many anomaly detection systems(ADSs)for IoT have high false positive rates when detecting DT *** leads to the misreporting of normal data,which will impact the normal operation of *** mitigate the impact caused by the high false positive rate of ADS,this paper proposes an ADS management scheme for clustered ***,we model the data transmission and anomaly detection in clustered ***,the operation strategy of the clustered IoT is formulated as the running probabilities of all ADSs deployed on every IoT *** the presence of a high false positive rate in ADSs,to deal with the trade-off between the security and availability of data,we develop a linear programming model referred to as a security trade-off(ST)***,we develop an analysis framework for the ST model,and solve the ST model on an IoT simulation ***,we reveal the effect of some factors on the maximum combined detection rate through theoretical *** show that the ADS management scheme can mitigate the data unavailability loss caused by the high false positive rates in ADS.

关键词： Network security Internet of Things data-tampering attack anomaly detection

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Icariin plus curcumol enhances autophagy through the mTOR pathway and promotes cathepsin B-mediated pyroptosis of prostate cancer cells

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Asian Pacific Journal of Tropical Biomedicine 2024年第2期14卷 55-64页

作者： Xu-Yun Wang Wen-Jing Xu Bo-Nan Li Tian-song sun Wen Sheng Department of Andrology Beijing Hospital of Traditional Chinese MedicineCapital Medical UniversityBeijing100010China Department of Dermatology The First Affiliated Hospital of Hunan University of Chinese MedicineChangsha410021China School of Integrated Chinese and Western Medicine Hunan University of Chinese MedicineChangsha410208China Andrology Laboratory Hunan University of Chinese MedicineChangsha410208China School of Rehabilitation Medicine and Health Care Hunan University of MedicineHuaihua418000China School of Traditional Chinese Medicine Hunan University of MedicineHuaihua418000China

Objective:To examine the effect of icariin plus curcumol on prostate cancer cells PC3 and elucidate the underlying ***:We employed the Cell Counting Kit 8 assay and colony formation assay to assess cell viability and *** expression was analyzed using monodansylcadaverine *** and Western blot analyses were used to evaluate protein expressions related to autophagy,pyroptosis,and the mTOR *** damage was examined using the lactate dehydrogenase ***,cathepsin B and NLRP3 were detected by ***:Icariin plus curcumol led to a decrease in PC3 cell proliferation and an enhancement of *** levels of LC3-Ⅱ/LC3-Ⅰand beclin-1 were increased,while the levels of p62 and mTOR were decreased after treatment with icariin plus *** changes were reversed upon overexpression of ***,3-methyladenine resulted in a decrease in inflammatory cytokines,pyroptosis-related protein levels,and lactate dehydrogenase concentration,compared to the icariin plus curcumol *** cathepsin B reversed the regulatory effects of icariin plus ***:Icariin plus curcumol demonstrates great potential as a therapeutic agent for castration-resistant prostate cancer by enhancing autophagy via the mTOR pathway and promoting pyroptosis mediated by cathepsin *** findings provide valuable insights into the molecular mechanisms underlying the therapeutic potential of icariin and curcumol for prostate cancer treatment.

关键词： Icariin Curcumol Autophagy mTOR Cathepsin B Pyroptosis Prostate cancer

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Photocatalytic degradation of methylene blue over MIL-100(Fe)/GO composites: a performance and kinetic study

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International Journal of Coal Science & Technology 2024年第3期11卷 208-222页

作者： Yuxue Wei Zhiyuan Fu Yingzi Meng Chun Li Fu Yin Xue Wang Chenghua Zhang Lisheng Guo song sun School of Chemistry and Chemical Engineering Anhui UniversityHefei230601AnhuiChina Anhui Tanxin Technology Co. LtdHuaibei235141AnhuiChina

Adsorption coupled with photocatalytic degradation is proposed to fulfill the removal and thorough elimination of organic ***,we report a facile hydrothermal synthesis of MIL-100(Fe)/GO *** adsorption and photocatalytic degradation process of methylene blue(MB)on MIL‐100(Fe)/GO composites were systematically studied from performance and kinetic perspectives.A possible adsorption‐photocatalytic degradation mechanism is *** optimized 1M8G composite achieves 95%MB removal(60.8 mg/g)in 210 min and displays well recyclability over ten *** obtained MB adsorption and degradation results are well fitted onto Langmuir isotherm and pseudo‐second order kinetic *** study shed light on the design of MOFs based composites for water treatment.

关键词： Graphene oxide Metal organic frameworks Methylene blue Adsorption Photocatalytic degradation

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Progress in Biomarkers Related to Biliary Atresia

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Journal of Clinical and Translational Hepatology 2024年第3期12卷 305-315页

作者： Fanyang Kong Rui Dong Gong Chen song sun Yifan Yang Jingying Jiang Lingdu Meng Huifen Chen Jiajie Zhu Shan Zheng Department of Pediatric Surgery Children’s Hospital of Fudan UniversityShanghai Key Laboratory of Birth Defectand Key Laboratory of Neonatal DiseaseMinistry of HealthShanghaiChina

Biliary atresia(BA)is a congenital cholestatic disease that can seriously damage children’s liver *** is one of the main reasons for liver transplantation in *** diagnosis of BA is crucial to the prognosis of patients,but there is still a lack of reliable non-invasive diagnostic ***,as some children are in urgent need of liver transplantation,evaluating the stage of liver fibrosis and postoperative native liver survival in children with BA using a straightforward,efficient,and less traumatic method is a major focus of *** recent years,an increasing number of BA-related biomarkers have been identified and have shown great potential in the following three aspects of clinical practice:diagnosis,evaluation of the stage of liver fibrosis,and prediction of native liver *** review focuses on the pathophysiological function and clinical application of three novel BA-related biomarkers,namely MMP-7,FGF-19,and ***,progress in well-known biomarkers of BA such as gamma-glutamyltransferase,circulating cytokines,and other potential biomarkers is discussed,aiming to provide a reference for clinical practice.

关键词： Biliary atresia Biomarkers Diagnosis Liver fibrosis Native liver survival

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