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Differential miRNA expression profiling of highly pathogenic avian influenza virus H5N1 infected chicken lungs reveals critical microRNAs,biological pathways and genes involved in the molecular pathogenesis

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Virologica Sinica 2022年第3期37卷 465-468页

作者： Anamika Mishra Muhasin Asaf Amod kumar Diwakar Dattatreya Kulkarni Richa Sood sandeep Bhatia Bharat Bhushan Ashwin Ashok Raut Pathogenomics Laboratory ICAR-National Institute of High Security Animal DiseasesOIE referral laboratory for Avian InfluenzaBhopal 462021India ICAR-National Institute of High Security Animal Diseases OIE referral lab for Avian InfluenzaBhopal 462021India Division of Animal Genetics ICAR-Indian Veterinary Research InstituteBareilly 243122India

Dear Editor,Avian influenza is a highly contagious viral infection affecting the respiratory ***(miRNAs)are small,regulatory,endogenous,non-coding RNAs of~22 nt that regulate the gene expression of the target mRNAs by cleavage or translational *** are connected with the host response during avian influenza virus(AIV)infection(Wang et al.,2009,2012).In this study.

关键词： influenza endogenous pathogenesis

Voltage Controlled Ring Oscillator Design with Novel 3 Transistors XNOR/XOR Gates

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Circuits and Systems 2011年第3期2卷 190-195页

作者： Manoj kumar sandeep kumar Arya Sujata Pandey 不详

In present work, improved designs for voltage controlled ring oscillators (VCO) using three transistors XNOR/XOR gates have been presented. Supply voltage has been varied from [1.8 - 1.2] V in proposed designs. In first method, the VCO design using three XNOR delay cells shows frequency variation of [1.900 - 0.964] GHz with [279.429 - 16.515] μW power consumption variation. VCO designed with five XNOR delay cells shows frequency variation of [1.152 - 0.575] GHz with varying power consumption of [465.715 - 27.526] μW. In the second method VCO having three XOR stages shows frequency variation [1.9176 - 1.029] GHz with power consumption variation from [296.393 - 19.051] μW. A five stage XOR based VCO design shows frequency variation [1.049 - 0.565] GHz with power consumption variation from [493.989 - 31.753] μW. Simulations have been performed by using SPICE based on TSMC 0.18μm CMOS technology. Power consumption and output frequency range of proposed VCOs have been compared with earlier reported circuits and proposed circuit’s shows improved performance.

关键词： CMOS Delay Cell Low Power VCO XOR and XNOR Gates

Expression of multidrug resistance proteins in retinoblastoma

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International Journal of Ophthalmology(English edition) 2017年第11期10卷 1655-1661页

作者： Swati Shukla Arpna Srivastava Sunil kumar Usha Singh sandeep Goswami Bhavna Chawla Mandeep Singh Bajaj Seema Kashyap Jasbir Kaur Department of Ocular Biochemistry Dr. Rajendra Prasad Centre for Ophthalmic Sciences All India Institute of Medical Sciences New Delhi 110029 India Oculoplasty & Pediatric Opthalmology Services Dr. Rajendra Prasad Centre for Ophthalmic Sciences All India Institute of Medical Sciences New Delhi 110029 India Department of Ocular Pathology Dr. Rajendra Prasad Centre for Ophthalmic Sciences All India Institute of Medical Sciences New Delhi 110029 India

AIM： To elucidate the mechanism of multidrug resistance in retinoblastoma, and to acquire more insights into in vivo drug ***： Three anticancer drug resistant Y79 human RB cells were generated against vincristine, etoposide or carboplatin, which are used for conventional chemotherapy in RB. Primary cultures from enucleated eyes after chemotherapy（PCNC） were also prepared. Their chemosensitivity to chemotherapeutic agents（vincristine, etoposide and carboplatin） were measured using MTT assay. Western blot analysis was performed to evaluate the expression of p53, Bcl-2 and various multidrug resistant proteins in retinoblastoma ***： Following exposure to chemotherapeutic drugs, PCNC showed less sensitivity to drugs. No significant changes observed in the p53 expression, whereas Bcl-2 expression was found to be increased in the drug resistant cells as well as in PCNC. Increased expression of P-glycoprotein（P-gp） was observed in drug resistant Y79 cells; however there was no significant change in the expression of P-gp found between primary cultures of primarily enucleated eyes and PCNC. Multidrug resistance protein 1（Mrp-1） expression was found to be elevated in the drug resistant Y79 cells as well as in PCNC. No significant change in the expression of lung resistance associatedprotein（Lrp） was observed in the drug resistant Y79 cells as well as in ***： Our results suggest that multidrug resistant proteins are intrinsically present in retinoblastoma which causes treatment failure in managing retinoblastoma with chemotherapy.

关键词： retinoblastoma chemotherapy multidrug resistance multidrug resistance associated proteins

On Secure Digital Image Watermarking Techniques

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Journal of Information Security 2011年第4期2卷 169-184页

作者： Manjit Thapa sandeep kumar Sood 不详

Digital watermarking is used to hide the information inside a signal, which can not be easily extracted by the third party. Its widely used application is copyright protection of digital information. It is different from the encryption in the sense that it allows the user to access, view and interpret the signal but protect the ownership of the content. One of the current research areas is to protect digital watermark inside the information so that ownership of the information cannot be claimed by third party. With a lot of information available on various search engines, to protect the ownership of information is a crucial area of research. In latest years, several digital watermarking techniques are presented based on discrete cosine transform (DCT), discrete wavelets transform (DWT) and discrete fourier transforms (DFT). In this paper, we propose an algorithm for digital image watermarking technique based on singular value decomposition;both of the L and U components are explored for watermarking algorithm. This technique refers to the watermark embedding algorithm and watermark extracting algorithm. The experimental results prove that the quality of the watermarked image is excellent and there is strong resistant against many geometrical attacks.

关键词： Digital Image Watermarking Singular Value Decomposition Watermark Embedding Algorithm Watermark Extracting Algorithm Ratio Analysis Security Analysis

Association of vitamin D and knee osteoarthritis in younger individuals

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World Journal of Orthopedics 2020年第10期11卷 418-425页

作者： Sujit kumar Tripathy Amrit Gantaguru Saurav Narayan Nanda sandeep Velagada Anand Srinivasan Manaswini Mangaraj Department of Orthopaedics All India Institute of Medical SciencesBhubaneswarBhubaneswar 751019OdishaIndia Department of Pharmacology AIIMS BhubaneswarBhubaneswar 751019OdishaIndia Department of Biochemistry AIIMS BhubaneswarBhubaneswar 751019OdishaIndia

BACKGROUND The incidence of primary osteoarthritis knee is gradually increasing among young *** increasing prevalence of obesity,sedentary lifestyle,sporting activity,and vitamin D deficiency(VDD)has been hypothesized for this shifting disease *** study was designed to look for the association of serum vitamin D among these young arthritic *** To look for the association of serum vitamin D in younger knee osteoarthritis(KOA)*** In a 2-year observational study,146 non-obese KOA patients of 35-60 years were evaluated clinically(Knee injury and Osteoarthritis Outcome Score,KOOS)and radiologically(Kellegren-Lawrence stage,KL).The serum 25(OH)D level of these patients and 146 normal healthy individuals of same age group were *** Both the groups were comparable in terms of age and *** average serum 25(OH)D level in healthy individuals and KOA patients was 45.83 ng/mL and 34.58 ng/mL,respectively(P<0.001).Inadequate serum 25(OH)D level(<30 ng/mL)was found in 46.57%of KOA patients and 24%of normal healthy participants indicating a significant positive association(odds ratio 2.77,95%CI:1.67-4.54,P<0.001).The 25(OH)D level in KL grade I,II,III and IV was 43.40,30.59,31.56 and 33.93 ng/mL respectively(no difference,P=0.47).Similarly,the KOOS score in sufficient,insufficient and deficient groups were 65.31,60.36 and 65.31,respectively(no difference,P=0.051).CONCLUSION The serum 25(OH)D level is significantly low in younger KOA ***,the clinical and radiological severities have no association with serum vitamin D level.

关键词： Degenerative disease Early-onset arthritis Cholecalciferol Sunlight Knee joint Arthroplasty Knee replacement

Long-term and non-invasive in vivo tracking of DiD dye-labeled human hepatic progenitors in chronic liver disease models

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World Journal of Hepatology 2022年第10期14卷 1884-1898页

作者： Chaturvedula Tripura Srinivas Gunda sandeep kumar Vishwakarma Avinash Raj Thatipalli Jedy Jose Mahesh kumar Jerald Aleem Ahmed Khan Gopal Pande Cell and Stem Cell Biology CSIR-Centre for Cellular and Molecular BiologyHyderabad 500007TelanganaIndia Central Laboratory for Stem Cell Research and Translational Medicine Centre for Liver Research and DiagnosticsDeccan College of Medical SciencesHyderabad 500058TelanganaIndia

BACKGROUND Chronic liver diseases(CLD)are the major public health burden due to the continuous increasing rate of global morbidity and *** inherent limitations of organ transplantation have led to the development of stem cell-based therapy as a supportive and promising therapeutic ***,identifying the fate of transplanted cells in vivo represents a crucial *** To evaluate the potential applicability of DiD dye as a cell labeling agent for longterm,and non-invasive in vivo tracking of transplanted cells in the *** Magnetically sorted,epithelial cell adhesion molecule positive(1×106 cells/mL)fetal hepatic progenitor cells were labeled with DiD dye and transplanted into the livers of CLD-severe combined immunodeficiency(SCID)***-infrared(NIR)imaging was performed for in vivo tracking of the DiD-labeled transplanted cells along with colocalization of hepatic markers for up to 80 *** existence of human cells within mouse livers was identified using Alu polymerase chain reaction and *** NIR fluorescence imaging of CLD-SCID mice showed a positive fluorescence signal of DiD at days 7,15,30,45,60,and 80 ***,positive staining of cytokeratin,c-Met,and albumin colocalizing with DiD fluorescence clearly demonstrated that the fluorescent signal of hepatic markers emerged from the DiD-labeled transplanted *** of liver function was also observed with serum levels of glutamic-oxaloacetic transaminase,glutamate-pyruvate transaminase,and *** detection of human-specific Alu sequence from the transplanted mouse livers provided evidence for the survival of transplanted cells at day *** DiD-labeling is promising for long-term and non-invasive in vivo cell tracking,and understanding the regenerative mechanisms incurred by the transplanted cells.

关键词： Chronic liver diseases Cell transplantation Cell tracking and imaging DiD Hepatic progenitors

Limb length discrepancy after total knee arthroplasty: A systematic review and meta-analysis

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World Journal of Clinical Cases 2021年第2期9卷 357-371页

作者： Sujit kumar Tripathy Siddharth Satyakam Pradhan Paulson Varghese Prabhudev Prasad Purudappa sandeep Velagada Tarun Goyal Bijnya Birajita Panda Jagadeesh Vanyambadi Department of Orthopaedics All India Institute of Medical SciencesBhubaneswar 751019OdishaIndia Department of Orthopedics VA Boston Health careBostonMassachusetts 02130United States Department of Orthopaedics All India Institute of Medical SciencesBathinda 209201India Department of Ophthalmology SCB Medical CollegeCuttack 751019India Department of Orthopaedics Salford Royal NHS Foundation TrustSalford M68HDUnited Kingdom

BACKGROUND Limb length discrepancy(LLD)after total knee arthroplasty(TKA)has been considered as one of the reasons for the unsatisfactory ***,there is no consensus about the extent of LLD that can be considered as clinically *** To evaluate the incidence of radiographic LLD and its impact on functional outcome following *** All randomized-controlled trial and observational studies on LLD in TKA,published till 22nd June 2020,were systematically searched and *** primary outcome was“limb lengthening or LLD after TKA”.The secondary outcomes included“assessment of LLD in varus/valgus deformity”and“impact of LLD on the functional outcome”.RESULTS Of 45 retrieved studies,qualitative and quantitative assessment of data was performed from eight studies and six studies,*** studies(n=1551)reported the average limb lengthening of 5.98 *** LLD after TKA was ranging from 0.4±10 mm to 15.3±2.88 *** incidence of postoperative radiographic LLD was reported in 44%to 83.3%of *** was no difference in the preoperative and postoperative LLD(MD-1.23;95%CI:-3.72,1.27;P=0.34).Pooled data of two studies(n=219)revealed significant limb lengthening in valgus deformity than varus(MD-2.69;95%CI:-5.11,0.27;P=0.03).The pooled data of three studies(n=611)showed significantly worse functional outcome in patients with LLD of≥10 mm compared to<10 mm(standard MD 0.58;95%CI:0.06,1.10;P=0.03).CONCLUSION Limb lengthening after TKA is common,and it is significantly more in valgus than varus *** LLD(≥10 mm)is associated with suboptimal functional outcome.

关键词： Arthroplasty Knee Replacement Limb length Joint diseases Surgery

Bioengineered humanized livers as better three-dimensional drug testing model system

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World Journal of Hepatology 2018年第1期10卷 22-33页

作者： sandeep kumar Vishwakarma Avinash Bardia Chandrakala Lakkireddy Raju Nagarapu Md Aejaz Habeeb Aleem Ahmed Khan Central Laboratory for Stem Cell Research and Translational Medicine Centre for Liver Research and Diagnostics Deccan College of Medical Sciences

AIM To develop appropriate humanized three-dimensional ex-vivo model system for drug testing. METHODS Bioengineered humanized livers were developed in this study using human hepatic stem cells repopulation within the acellularized liver scaffolds which mimics with the natural organ anatomy and physiology. Six cytochrome P-450 probes were used to enable efficient identification of drug metabolism in bioengineered humanized livers. The drug metabolism study in bioengineered livers was evaluated to identify the absorption, distribution, metabolism, excretion and toxicity *** The bioengineered humanized livers showed cellular and molecular characteristics of human livers. The bioengineered liver showed three-dimensional natural architecture with intact vasculature and extra-cellular matrix. Human hepatic cells were engrafted similar to the human liver. Drug metabolism studies provided a suitable platform alternative to available ex-vivo and in vivo models for identifying cellular and molecular dynamics of pharmacological *** The present study paves a way towards the development of suitable humanized preclinical model systems for pharmacological testing. This approach may reduce the cost and time duration of preclinical drug testing and further overcomes on the anatomical and physiological variations in xenogeneic systems.

关键词： Acellularization Repopulation Drug testing Humanized liver Bioengineering

Studies on antibacterial activity and biochemical/biophysical properties of phytocystatin purified from <i>Catharanthus roseus</i>(Madagascar Periwinkle): an evergreen subshrub commonly found in district bijnor (U.P.)

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Advances in Bioscience and Biotechnology 2011年第6期2卷 391-396页

作者： Garima Sharma Mukesh kumar sandeep Sharma 不详

In the present study two phytocystatins (thiol protease inhibitors) have been isolated and purified to homogeneity form Catharanthus roseusby a simple two step procedure using ammonium sulphate fractionation and gelfiltration chromatography on Sephacryl- *** two inhibitors were named as CRCI and CRCII (Catharanthus roseuscystatin I and II). CRCI and CRCII were purified with a fold purification of 1333.3, 1348.5 and percent yield of 18.18 and 16.35% respectively. The molecular weight of purified phytocystatins were 19.1 kDa and 16.9 kDa respectively, as determined by SDS-PAGE and mass spectrometry. Effect of denaturants like ureaon CRCI and II was analysed by Fluorescence spectroscopy. Results suggest an unfolding of CRCI and II. FTIR results show that structurally CRCI is different from CRCII. Hydrophobic interactions are observed over a longer timescale (5 - 150 min). Furthermore, fluorescence spectroscopy results show quenching of fluorescence intensity of CRC I and II, although to different extent, due to perturbations of the environment of aromatic residues in the protein. Both the cystatins showed strong inhibitory/antibacterial activity against E. coliand S.

关键词： Plant Cystatins FTIR Fluorescence Spectroscopy Protease Inhibitor Proteins