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Artificial intelligence-driven radiomics study in cancer:the role of feature engineering and modeling

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Military Medical Research 2024年第1期11卷 115-147页

作者： yuan-Peng Zhang Xin-yun Zhang yu-Ting Cheng Bing Li Xin-Zhi Teng Jiang Zhang saikit Lam ta Zhou Zong-Rui Ma Jia-Bao sheng Victor CWtam shara WyLee Hong Ge Jing Cai Department of Medical Informatics Nantong UniversityNantong 226001JiangsuChina Department of Health Technology and Informatics the Hong Kong Polytechnic UniversityHong Kong 999077China The Hong Kong Polytechnic University shenzhen Research Institute Shenzhen 518000GuangdongChina Department of Radiation Oncology the Affiliated Cancer Hospital of Zhengzhou University and Henan Cancer HospitalZhengzhou 450008China

Modern medicine is reliant on various medical imaging technologies for non-invasively observing patients’***,the interpretation of medical images can be highly subjective and dependent on the expertise of ***,some potentially useful quantitative information in medical images,especially that which is not visible to the naked eye,is often ignored during clinical *** contrast,radiomics performs high-throughput feature extraction from medical images,which enables quantitative analysis of medical images and prediction of various clinical *** have reported that radiomics exhibits promising performance in diagnosis and predicting treatment responses and prognosis,demonstrating its potential to be a non-invasive auxiliary tool for personalized ***,radiomics remains in a developmental phase as numerous technical challenges have yet to be solved,especially in feature engineering and statistical *** this review,we introduce the current utility of radiomics by summarizing research on its application in the diagnosis,prognosis,and prediction of treatment responses in patients with *** focus on machine learning approaches,for feature extraction and selection during feature engineering and for imbalanced datasets and multi-modality fusion during statistical ***,we introduce the stability,reproducibility,and interpretability of features,and the generalizability and interpretability of ***,we offer possible solutions to current challenges in radiomics research.

关键词： Artificial intelligence Radiomics Feature extraction Feature selection Modeling Interpretability Multimodalities Head and neck cancer

Washed microbiota transplantation for Crohn’s disease:A metagenomic,metatranscriptomic,and metabolomic-based study

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World Journal of Gastroenterology 2024年第11期30卷 1572-1587页

作者： shi-Ju Chen Da-ya Zhang Xia Wu Fa-Ming Zhang Bo-ta Cui yi-Hao Huang Zu-Lun Zhang Rui Wang Fei-Hu Bai Graduate school Hainan Medical UniversityHaikou 571199Hainan ProvinceChina Department of Microbiota Medicine&Medical Center for Digestive Diseases The Second Affiliated Hospital of Nanjing Medical UniversityNanjing 210011Jiangsu ProvinceChina Department of Gastroenterology The Second Affiliated Hospital of Hainan Medical UniversityHaikou 570216Hainan ProvinceChina

BACKGROUND Fecal microbiota transplantation(FMT)is a promising therapeutic approach for treating Crohn’s disease(CD).The new method of FMT,based on the automatic washing process,was named as washed microbiota transplantation(WMT).Most existing studies have focused on observing the clinical ***,the mechanism of action of FMT for the effective management of CD-particularly in-depth multi-omics analysis involving the metagenome,metatranscriptome,and metabolome-has not yet been *** To assess the efficacy of WMT for CD and explore alterations in the microbiome and metabolome in response to *** We conducted a prospective,open-label,single-center clinical *** CD patients underwent *** clinical responses(defined as a decrease in their CD Activity Index score of>100 points)and their microbiome(metagenome,metatranscriptome)and metabolome profiles were evaluated three months after the *** seven of the 11 patients(63.6%)showed an optimal clinical response three months *** microbiome diversity significantly increased after WMT,consistent with improved clinical *** of the metagenome and metatranscriptome analyses revealed consistent alterations in certain strains,such as Faecalibac-terium prausnitzii,Roseburia intestinalis,and Escherichia *** addition,metabolomics analyses demonstrated that CD patients had elevated levels of various amino acids before treatment compared to the ***,levels of vital amino acids that may be associated with disease progression(e.g.,L-glutamic acid,gamma-glutamyl-leucine,and prolyl-glutamine)were reduced after *** WMT demonstrated therapeutic efficacy in CD treatment,likely due to the effective reconstruction of the patient’s ***-omics techniques can effectively help decipher the potential mechanisms of WMT in treating CD.

关键词： Crohn’s disease Clinical trials Fecal microbiota transplant Metagenome Metatranscriptome Metabolome

Methionine sources and genotype affect embryonic intestinal development, antioxidants, tight junctions, and growth-related gene expression in chickens

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Animal Nutrition 2024年第1期16卷 218-230页

作者： James K.Lugata sawadi F.Ndunguru Gebrehaweria K.Reda Xénia E.Ozsváth Eszter Angyal Levente Czeglédi Gabriella Gulyás Renáta Knop János Oláh Zoltán Mészár Rita Varga Brigitta Csernus Csaba szabó Department of Animal Nutrition and Physiology Faculty of Agriculture and Food Sciences and Environmental Management University of Debrecen Faculty of Agriculture and Food sciences and Environmental Management Doctoral School of Animal Science University of Debrecen Department of Animal Husbandry Faculty of Agriculture and Food Sciences and Environmental Management University of Debrecen Department of Evolutionary Zoology and Human Biology Faculty of Science and Technology University of Debrecen Institutes for Agricultural Research and Educational Farm University of Debrecen Department of Anatomy Histology and Embryology Faculty of Medicine University of Debrecen

Methionine(Met) is an essential and first limiting amino acid in the poultry diet that plays a significant role in chicken embryonic development and growth. The present study examined the effect of in ovo injection of DL-Met and L-Met sources and genotypes on chicken embryonic-intestinal development and health. Fertilized eggs of the two genotypes, TETRA-sL layer hybrid(TsL)—commercial layer hybrid and Hungarian Partridge colored hen breed(HPC)—a native genotype, were randomly distributed into four treatments for each genotype. The treatment groups include the following: 1) control non-injected eggs(NoIn); 2) saline-injected(saIn); 3) DL-Met injected(DLM); and 4) L-Met injected(LM). The in ovo injection was carried out on 17.5 d of embryonic development; after hatching, eight chicks per group were sacrificed, and the jejunum was extracted for analysis. The results showed that both DLM and LM groups had enhanced intestinal development as evidenced by increased villus width, villus height, and villus area(P significantly reduced crypt depth, glutathione(GsH) content, glutathione s-transferase 3 alpha(GsT3), occludin(OCLN) gene expression and increased villus height to crypt depth ratio in the TsL genotype than the LM group(P ype has overexpressed insulin-like growth factor 1(IGF1) gene, tricellulin(MD2), occludin(OCLN),superoxide dismutase 1(sOD1), and GsT3 genes than the TsL genotype(P sion, these findings showed that in ovo injection of Met enhanced intestinal development, and function, with genotypes responding differently under normal conditions. Genotypes also influenced the expression of intestinal antioxidants, tight junction, and growth-related genes.

关键词： DL-Methionine L-Methionine In ovo injection Intestinal development Poultry

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社区环境与活动空间共享对社区归属感的影响

地理研究 2024年第9期43卷 2343-2353页

作者：塔娜孙翊豪华东师范大学地理科学学院上海200241 华东师范大学地理信息科学教育部重点实验室上海200241 自然资源部超大城市自然资源时空大数据分析应用重点实验室上海200241

社会转型与移动性背景下,个体与社区环境的互动方式不断重构,社区归属感的形成路径更加复杂。基于此,本文利用上海市居民活动与出行调查数据,建立公共接触潜力的广度、强度和跨群体接触指数测度居民的社区活动空间共享特征,运用有序logi... 详细信息

社会转型与移动性背景下,个体与社区环境的互动方式不断重构,社区归属感的形成路径更加复杂。基于此,本文利用上海市居民活动与出行调查数据,建立公共接触潜力的广度、强度和跨群体接触指数测度居民的社区活动空间共享特征,运用有序logit模型探究社区环境、活动空间共享对居民社区归属感的影响。研究发现:①公共接触潜力广度和跨收入群体公共接触潜力对社区归属感具有负向影响,跨户口群体公共接触潜力具有正向影响,公共接触潜力强度影响不显著。②社区外来人口比例较高有利于提升社区归属感,说明社区社会组成多样有利于提升对社区的情感依赖。③社区环境感知对社区归属感具有正向影响,商品房居民比其他社区居民更有可能表现出高社区归属感。④本地、中收入、已婚和拥有住房产权的居民更有可能对社区产生情感依赖,但日常活动远离社区的人更难建立起对社区的情感。本文提出通过活动空间共享深化移动性背景下社区促进社会融合的机制研究,丰富社区社会融合理论,为构建包容性城市和促进高质量发展提供参考。

关键词：行为地理学户口社会融合社区活动空间

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地铁可达性对生活满意度的影响研究进展

科技导报 2024年第3期42卷 44-52页

作者：塔娜王琦华东师范大学地理信息科学教育部重点实验室上海200241 华东师范大学地理科学学院上海200241 自然资源部超大城市自然资源时空大数据分析应用重点实验室上海200241

总结了地铁可达性的测度方法,梳理了地铁可达性对生活满意度影响的直接与间接效应,构建了地铁可达性对生活满意度影响的行为框架,以行为地理学与城市规划的相关理论为基础,从微观个体的视角出发,探讨地铁可达性、个体时空间行为、生活... 详细信息

总结了地铁可达性的测度方法,梳理了地铁可达性对生活满意度影响的直接与间接效应,构建了地铁可达性对生活满意度影响的行为框架,以行为地理学与城市规划的相关理论为基础,从微观个体的视角出发,探讨地铁可达性、个体时空间行为、生活满意度三者之间的关系。

关键词：地铁可达性时空间行为生活满意度行为地理学

环境何以媒介化?——基于阿拉善左旗荒漠化治理运动的田野考察

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新闻大学 2024年第4期 45-56,118页

作者：阿希塔复旦大学新闻学院上海200433

在深度媒介化社会场景下,环境在生态文明与国际气候双重议题加持下愈发媒介化。本研究以阿拉善左旗荒漠化治理运动为研究对象,探讨了中介过程对环境运动的影响。研究发现,以符号互动为表征的环境运动已经形成了众多深度媒介化情境与社... 详细信息

在深度媒介化社会场景下,环境在生态文明与国际气候双重议题加持下愈发媒介化。本研究以阿拉善左旗荒漠化治理运动为研究对象,探讨了中介过程对环境运动的影响。研究发现,以符号互动为表征的环境运动已经形成了众多深度媒介化情境与社会意义,在这些情境中,不同行动者组群、相关性框架与交往实践的组合所建构的传播互型形成了广泛的社会影响,不仅塑造了具有中心指向性的实践秩序,也创造了众多具有归属感的媒介化集体。

关键词：媒介化社会建构环境传播荒漠化治理

Discussion of the Composition of Jaboticaba in Different Processes

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Food and Nutrition sciences 2024年第1期15卷 101-112页

作者： Ching-Hu Tsai yi-Chun Lin Chih-ta Liu yo-Ju Chen Department of Long-Term Care Kang Ning University Taipei Department of Respiratory Therapy En Chu Kong Hospital New Taipei City Department of Thoracic surgery Division En Chu Kong Hospital New Taipei City

This study discusses the composition analysis and comparison of Jaboticaba under different processing conditions for fermented liquid, jam, fruit powder, and fruit vinegar. The differences and comparison of the contents of total polyphenols, anthocyanins, resveratrol, superoxide dismutase, small molecular peptides and ellagic acid in their products were analyzed. After analysis and comparison of results, the content of total polyphenols was found to be the highest 44.82 ± 0.89 (mg/g) after being fermented directly from fresh fruit. The fresh fruit was dried at low temperature and ground into powder, with a maximum ellagic acid content of 12.799 ± 0.12 (mg/g). Fresh fruit was then made into jam, with the highest anthocyanin content of 57.39 ± 1.20 (mg/g). The fruit vinegar was produced by fermentation. Except for the content of small molecule peptides, which was similar to the content of fermentation broth and fruit powder, they were 20.63 ± 1.61, 23.84 ± 2.51 and 20.52 ± 1.21 (mg/g), and the rest of the composition was not as good as other samples. In the fresh fruit fermentation broth samples, resveratrol was produced and detected, and its content was 2.14 (mg/L), while it was not detected in other samples, and a superoxide dismutase (sOD)-like enzyme was detected in the fresh fruit fermentation broth. The highest activity was 49002.5 units/mL. Jaboticaba is prepared using a fermentation broth processing method with fresh fruit, and its total polyphenol content is higher than that of fruit powder, jam, and fruit vinegar. The commercial value of Jaboticaba and the establishment of composition content data are relatively improved, which is more promising for the future.

关键词： Jaboticaba Total Polyphenols Anthocyanins Resveratrol small Molecule Peptides

socio-Demographic and Clinical Characteristics of Patients Presenting with Lower Urinary Tract symptoms secondary to BPH, in a Tertiary Hospital

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Open Journal of Urology 2024年第8期14卷 447-457页

作者： Abdul-Jalilu Mohammed Muntaka Edwin Mwintiereh ta-Ang yenli Francis Atindaana Abantanga Department of surgery School of Medicine University for Development Studies Tamale Ghana Department of surgery Tamale Teaching Hospital Tamale Ghana

Background: Benign prostatic hyperplasia (BPH) is the proliferation of the stromal and epithelial cells of the prostate gland, resulting in an increase in its size. This may result in obstruction of the lower urinary tract causing storage and voiding symptoms. Methods: This was a prospective cross-sectional study from August 2020 to July 2021, to evaluate the characteristic of patients presenting to the tamale Teaching Hospital with lower urinary tract symptoms secondary to BPH. Results: The median age at presentation with LUTs secondary to BPH is 68.88 ± 11.10 years with an average prostate volume of 70 g. The average time of presentation to the hospital is 5 months, mostly with moderate to severe symptoms. Correlation between Prostate volume (PV) and age yielded a positive relationship;however, this was not statistically significant, (r = 0.028, p-value = 0.747). There was a significant positive relationship between PV and the IPss score, (r = 0.334, p-value Conclusion: Our patients with symptomatic BPH present at age 60 years and above, with nearly all of them presenting with moderate to severe LUTs.

关键词： Benign Prostate Hyperplasia Lower Urinary Tract symptoms sociodemographic Characteristics

Cellular angiofibroma arising from the rectocutaneous fistula in an adult: A case report

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World Journal of Clinical Cases 2024年第10期12卷 1778-1784页

作者： Hao-En Chen yu-yang Lu Ruei-yu su Hong-Hau Wang Chao-yang Chen Je-Ming Hu Jung-Cheng Kang Kuan-Hsun Lin ta-Wei Pu Department of surgery Taichung Armed Forces General HospitalTaichung 411Taiwan Department of surgery Tri-Service General HospitalNational Defense Medical CenterTaipei 114Taiwan Department of Pediatrics Tri-Service General HospitalNational Defense Medical CenterTaipei 114Taiwan Department of Pathology Tri-Service General HospitalNational Defense Medical CenterTaipei 105Taiwan Department of Pathology and Laboratory Medicine Taoyuan Armed Forces General HospitalTaoyuan 32551Taiwan Department of Radiology Tri-Service General Hospital Songshan BranchNational Defense Medical CenterTaipei 105Taiwan Division of Colon and Rectal surgery Department of SurgeryTri-Service General HospitalNational Defense Medical CenterTaipei 114Taiwan Division of Colon and Rectal surgery Department of SurgeryTaiwan Adventist HospitalTaipei 105Taiwan Division of Thoracic surgery Department of SurgeryTri-Service General HospitalNational Defense Medical CenterTaipei 114Taiwan Division of Colon and Rectal surgery Department of SurgeryTri-Service General Hospital Songshan BranchNational Defense Medical CenterTaipei 105Taiwan

BACKGROUND Rectocutaneous fistulae are *** infection originates within the anal glands and subsequently extends into adjacent regions,ultimately resulting in fistula *** angiofibroma(CAF),also known as an angiomy ofibroblastoma-like tumor,is a rare benign soft tissue neoplasm predominantly observed in the scrotum,perineum,and inguinal area in males and in the vulva in *** describe the first documented case CAF that developed within a rectocutaneous fistula and manifested as a perineal *** sUMMARy In the outpatient setting,a 52-year-old male patient presented with a 2-year history of a growing perineal mass,accompanied by throbbing pain and minor scrotal *** examination revealed a soft,well-defined,non-tender mass at the left buttock that extended towards the perineum,without a visible *** initial assessment identified a soft tissue tumor,and the laboratory data were within normal *** and pelvic computed tomography(CT)revealed swelling of the abscess cavity that was linked to a rectal cutaneous fistula,with a track-like lesion measuring 6 cm×0.7 cm in the left perineal region and attached to the left *** examination found no significant inner orifices.A left medial gluteal incision revealed a thick-walled mass,which was excised along with the extending tract,and curettage was *** examination confirmed CAF *** patient achieved total resolution during follow-up assessments and did not require additional *** CT imaging supports perineal lesion diagnosis and *** angiofibromas,even with a cutaneous fistula,can be excised transperineally.

关键词： Angiofibroma Perineal mass Rectocutaneous fistula Anorectal fistula Anal fistula Case report