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Label-free biosensing with singular-phaseenhanced lateral position shift based on atomically thin plasmonic nanomaterials

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Light(Science & Applications) 2024年第5期13卷 810-822页

作者： Shaodi Zhu rodolphe jaffiol Aurelian Crunteanu Cyrille Vézy Sik-To Chan Wu Yuan Ho-Pui Ho Shuwen Zeng Light Nanomaterials&Nanotechnologies(L2n)CNRS-EMR 7004University of Technology of Troyes10000 TroyesFrance. Department of Biomedical Engineering The Chinese University of Hong KongShatinNew TerritoriesHong KongChina XLIM Research Institute UMR 7252 CNRS/University of Limoges123Avenue Albert ThomasLimogesFrance

Rapid plasmonic biosensing has attracted wide attention in early disease diagnosis and molecular biology ***,it was still challenging for conventional angle-interrogating plasmonic sensors to obtain higher sensitivity without secondary amplifying labels such as plasmonic *** address this issue,we developed a plasmonic biosensor based on the enhanced lateral position shift by phase *** singularity presents as a sudden phase retardation at the dark point of reflection from resonating plasmonic substrate,leading to a giant position shift on reflected ***,for the first time,the atomically thin layer of Ge2Sb2Te5(GST)on silver nanofilm was demonstrated as a novel phase-response-enhancing plasmonic *** GST layer was not only precisely engineered to singularize phase change but also served as a protective layer for active silver *** new configuration has achieved a record-breaking largest position shift of 439.3μm measured in calibration experiments with an ultra-high sensitivity of 1.72×10^(8)nm RIU−1(refractive index unit).The detection limit was determined to be 6.97×10^(−7)RIU with a 0.12μm position ***,a large figure of merit(FOM)of 4.54×10^(11)μm(RIU∙°)^(−1)was evaluated for such position shift interrogation,enabling the labelfree detection of trace amounts of *** targeted biosensing experiments,the optimized sensor has successfully detected small cytokine biomarkers(TNF-αand IL-6)with the lowest concentration of 1×10^(−16)*** two molecules are the key proinflammatory cancer markers in clinical diagnosis,which cannot be directly screened by current clinical *** further validate the selectivity of our sensing systems,we also measured the affinity of integrin binding to arginylglycylaspartic acid(RGD)peptide(a key protein interaction in cell adhesion)with different Mn2+ion concentrations,ranging from 1 nM to 1 mM.

关键词： diagnosis protective silver

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Incidental and secondary findings in trio exome sequencing

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Genes & Diseases 2024年第4期11卷 152-154页

作者： Camille Cohen Emeline Bellanger Jeremie Mortreux Laure Raymond Francois Vialard rodolphe Dard Department of Genetics Centre Hospitalier Intercommunal de Poissy-Saint-Germain-en-LayePoissy 78300France RHuMA UMR-BREEDINRA-ENVA-UVSQMontigny le Bretonneux 78180France Service de Genetique Laboratoire Eurofins BiomnisLyon 69007France

Exome sequencing(ES)generates secondary findings(SFs)in 2%of tested individuals if one follows the American College of Medical Genetics and Genomics(ACMG)guide-lines.i,z2 However,the rate of incidental and secondary findings(ISFs)is higher in routine clinical practice because of(i)the use of trio ES instead of solo sequencing and(i)the exclusion of the incidental findings(IFs)of medical value concerning genes in the ACMG ***,it is not clear how sufficient is a restricted list of genes to detect every ISF of major clinical value;and what is the amount of additional workload for the laboratory.

关键词： routine clinical finding

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Wafer-level vapor cells filled with laser-actuated hermetic seals for integrated atomic devices

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Microsystems & Nanoengineering 2022年第6期8卷 225-235页

作者： Vincent Maurice Clément Carlé Shervin Keshavarzi Ravinder Chutani Samuel Queste Ludovic Gauthier-Manuel Jean-Marc Cote Rémy Vicarini Moustafa Abdel Hafiz rodolphe Boudot Nicolas Passilly IEMN-Institut d’Electronique de Microélectronique et de Nanotechnologie UMR8520 CNRSUniversitéLilleCentrale LilleF-59000 LilleFrance FEMTO-ST Institute UMR6174 CNRSUniversitéBourgogne Franche-ComtéF-25030 BesançonFrance

Atomic devices such as atomic clocks and optically-pumped magnetometers rely on the interrogation of atoms contained in a cell whose inner content has to meet high standards of purity and ***-blowing techniques and craftsmanship have evolved over many decades to achieve such standards in macroscopic vapor *** the emergence of chip-scale atomic devices,the need for miniaturization and mass fabrication has led to the adoption of microfabrication techniques to make millimeter-scale vapor ***,many shortcomings remain and no process has been able to match the quality and versatility of glass-blown ***,we introduce a novel approach to structure,fill and seal microfabricated vapor cells inspired from the century-old approach of glass-blowing,through opening and closing single-use zero-leak microfabricated *** valves are actuated exclusively by laser,and operate in the same way as the“make-seals”and“break-seals”found in the filling apparatus of traditional *** structures are employed to fill cesium vapor cells at the *** make-seal structure consists of a glass membrane that can be locally heated and deflected to seal a *** break-seal is obtained by breaching a silicon wall between *** new approach allows adapting processes previously restricted to glass-blown *** can also be extended to vacuum microelectronics and vacuum-packaging of micro-electro-mechanical systems(MEMS)devices.

关键词： filled vacuum heated

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Contributors’enrollment in collaborative online communities:the case of OpenStreetMap

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Geo-Spatial Information Science 2017年第3期20卷 282-295页

作者： Daniel Bégin rodolphe Devillers Stéphane Roche Department of Geography Memorial University of NewfoundlandSt.John’sCanada Centre de Recherche en Géomatique UniversitéLavalQuébecCanada

The number of people registering in an online community depends on two main factors:interest in,and awareness of,the *** to a project does not,however,imply contributing to it,as lacking the knowledge and skills can be a barrier to *** order to identify the nature of events that might have facilitated or hindered enrollments in the OpenStreetMap(OSM)project over time,we analyzed the correlations between the number of new participants and the events that dotted its *** different metrics were defined to characterize participants’behaviors:the daily number of registrations,the daily number of participants that made a first contribution,the delays between contributors’registration and their first edits,and a daily contribution ratio built from the number of new contributors and the number of new registered *** series analyses were used to identify trends,and outstanding variations of the number of *** inventory of events that took place along the OSM project’s history was created and appreciable variations of the metrics have been linked to events that seemed to be *** a correlation does not imply causality,many of the explanations these correlations suggest are supported by the results of other studies,either directly or *** instance,when considering the time participants spend as“lurker”,as well as on the nature of the contribution of early *** other cases,they suggest new explanations for the origin of the spam accounts that affect registration statistics,or the decline in the proportion of registered members who actually become contributors.

关键词： OpenStreetMap(OSM) contributors lurkers participation knowledge motivation

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Visualizing perceived spatial data quality of 3D objects within virtual globes

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International Journal of Digital Earth 2014年第10期7卷 771-788页

作者： Krista Jones rodolphe Devillers Yvan Bedard Olaf Schroth Department of Geography Memorial University of NewfoundlandSt.John’sCanada Departement des sciences geomatiques Universite LavalQuebecCanada Department of Landscape The University of SheffieldSheffieldUK

Virtual globes(VGs)allow Internet users to view geographic data of heterogeneous quality created by other *** article presents a new approach for collecting and visualizing information about the perceived quality of 3D data in *** aims atimproving users’awareness of the qualityof 3D *** of relying onthe existing metadata or on formal accuracy assessments that are often impossible in practice,we propose a crowd-sourced quality recommender system based on the five-star visualization method successful in other types of Web *** alternative five-star visualizations were implemented in a Google Earth-based prototype and tested through a formal user *** tests helped identifying the most effective method for a 3D *** indicate that while most websites use a visualization approach that shows a‘number of stars’,this method was the least preferred by ***,participants ranked the‘number within a star’method highest as it allowed reducing the visual clutter in urban settings,suggesting that 3D environments such as VGs require different *** that expert and non-expert users in geographic data share similar preferences for the most and least preferred visualization methods.

关键词： virtual globes spatial data quality uncertainty quality recommender system five-star 3D objects

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NumericalMethods for Balance Laws with Space Dependent Flux:Application to Radiotherapy Dose Calculation

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Communications in Computational Physics 2011年第10期10卷 1184-1210页

作者： Christophe Berthon Martin Frank Celine Sarazin rodolphe Turpault Universite de Nantes Laboratoire de Mathematiques Jean LerayUMR66292 rue de la HoussiniereBP 9220844322 Nantes Cedex 3France RWTH Aachen University MathematicsCenter for Computational Engineering ScienceSchinkelstrasse 252062 AachenGermany

The present work is concerned with the derivation of numerical methods to approximate the radiation dose in external beam *** address this issue,we consider a moment approximation of radiative transfer,closed by an entropy minimization *** model under consideration is governed by a system of hyperbolic equations in conservation form supplemented by source *** main difficulty coming from the numerical approximation of this system is an explicit space dependence in the flux ***,this dependence will be seen to be stiff and specific numerical strategiesmust be derived in order to obtain the needed accuracy.A first approach is developed considering the 1D case,where a judicious change of variables allows to eliminate the space dependence in the flux *** is not possible in *** therefore reinterpret the 1D scheme as a scheme on two meshes,and generalize this to 2D by alternating transformations between separate *** call this procedure projection *** numerical experiments,coming from medical physics,illustrate the potential applicability of the developed method.

关键词： Radiotherapy hyperbolic system of conservation laws source term approximations finite volume methods

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Persuasion, reflection, judgment

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作者： rodolphe Gasche.

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Second-line therapy for advanced hepatocellular carcinoma with regorafenib or cabozantinib:Multicenter French clinical experience in real-life after matching

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World Journal of Gastrointestinal Oncology 2022年第8期14卷 1510-1527页

作者： Xavier Adhoute Marie De Matharel Laurent Mineur Guillaume Pénaranda Dann Ouizeman Clemence Toullec Albert Tran Paul Castellani Armelle Rollet Valérie Oules HervéPerrier Si Nafa Si Ahmed Marc Bourliere rodolphe Anty Department of Gastroenterology and Hepatology Hôpital Saint-JosephMarseille 13000France Department of Gastroenterology and Hepatology Hôpital Universitaire de l’ArchetNice 06000France Department of Oncology Institut Sainte-CatherineAvignon 84000France Department of Biostatistics AlphaBio LaboratoryMarseille 13000France

BACKGROUND Starting a second-line systemic treatment for hepatocellular carcinoma(HCC)is a common *** only therapeutic options in France are two broadspectrum tyrosine kinase inhibitors(TKIs),regorafenib(REG)and cabozantinib(CBZ),but no comparative real-life studies are *** To evaluate the progression-free survival(PFS)of patients treated with REG or CBZ,we investigated the disease control rate(DCR),overall survival(OS),and safety of both *** identify the variables associated with disease progression over *** A retrospective multicenter study was performed on the clinical data of patients attending one of three referral centers(Avignon,Marseille,and Nice)between January 2017 and March 2021 using propensity score *** and OS were assessed using the Kaplan-Meier *** analysis(MA)of progression risk factors over time was performed in matched-pair *** Fifty-eight patients 68(62-74)years old with HCC,Barcelona clinic liver cancer(BCLC)B/C(86%),Child-Pugh(CP)-A/B(24%)received REG for 3.4(1.4-10.5)mo as second-line *** patients 68(60-73)years,BCLC B/C(75%),CP-A/B(25%)received CBZ for 3.7(1.8-4.9)mo after first-line treatment with sorafenib[3(2-4)(CBZ)vs 4(2.9-11.8)mo(REG),P=0.0226].Twenty percent of patients received third-line *** matching,PFS and DCR were not significantly different after a median follow-up of 6.2(2.7-11.7)mo(REG)vs 5.2(4-7.2)mo(CBZ),P=*** was no difference in grade 3/4 toxicities,dose reductions,or *** OS of CP-A patients was 8.3(5.2-24.8)vs 4.9(1.6-11.7)mo(CP-B),P=*** MA of risk factors for progression over time identified C-reactive protein(CRP)>10 mg/L,neutrophil-to-lymphocyte ratio(NLR)>3,and aspartate aminotransferase(AST)>45 IU as predictive *** This multicenter indirect comparative study found no significant difference in PFS between REG and CBZ as second-line therapy for advanced *** levels of inflam

关键词： Hepatocellular carcinoma Regorafenib Cabozantinib C-reactive protein Neutrophillymphocyte ratio

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Fish diversity reduction and assemblage structure homogenization in lakes:A case study on unselective fishing in China

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Water Biology and Security 2022年第3期1卷 43-50页

作者： Han Liu Yushun Chen rodolphe E.Gozlan Xiao Qu Wentong Xia Fei Cheng Lizhu Wang Craig P.Paukert Julian D.Olden Songguang Xie State Key Laboratory of Freshwater Ecology and Biotechnology Institute of HydrobiologyChinese Academy of SciencesWuhan430072China University of Chinese Academy of Sciences Beijing100049China ISEM Universitéde MontpellierCNRSIRDEPHEMontpellierFrance International Joint Commission Great Lakes Regional Office DetroitMI48232USA U.S.Geological Survey Missouri Cooperative Fish and Wildlife Research UnitSchool of Natural ResourcesUniversity of Missouri302 Anheuser-Busch Natural Resources BuildingColumbiaMO65211USA School of Aquatic and Fishery Sciences University of WashingtonSeattleWA98195USA Department of Wildlife Fish&Environmental StudiesSwedish University of Agricultural SciencesUmeaSweden State Key Laboratory of Marine Resource Utilization in South China Sea Hainan UniversityHaikou570228China Huai'an Research Center Institute of HydrobiologyChinese Academy of SciencesHuai'an223002China

Unselective fishing involves activities that target the entire assemblage rather than specific fish species,size classes,or trophic *** common fishing approach has been in practice for decades in inland waters in China but its implications for biodiversity remain *** addressed this issue by studying fish assemblages in freshwater lakes(five fishing lakes,one reference lake,and a total of 51 sampling sites)between pre-and postfishing time-periods in Eastern China during 2017–*** effects of lake,fishing period,and their interactions on fish abundance,biomass,and diversity indices were *** analysis was conducted to test for differences in fish assemblages among lakes and between fishing *** the implementation of fishing activities,significant reductions in fish species richness,abundance,biomass,and all three life-history strategies(opportunistic,equilibrium,and periodic)were observed in fishing lakes,whereas opposite trends were observed in the reference *** similarity of fish assemblages among fishing lakes increased over the threeyear monitoring *** results suggest that unselective fishing reduces fish diversity and homogenizes fish assemblage structure in *** findings have important implications for protecting both biodiversity and fisheries in inland waters in China and are applicable to other countries or regions that rely on fish as a major food source.

关键词： Biodiversity conservation Human stressors Inland fisheries Over exploitation Sustainability Beta diversity

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Intrahepatic Cholangiocarcinoma and Hepatocellular Carcinoma:Real-life Data on Liver Disease,Treatment and Prognosis

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Journal of Clinical and Translational Hepatology 2023年第5期11卷 1106-1117页

作者： Xavier Adhoute Olivia Pietri Guillaume Pénaranda Thomas Wolf Patrick Beaurain Olivier Monnet Arthur Laquière Justine Bonomini Frédéric Neumann Olivier Levrel Jean-Pascal Buono Xavier Hanna Paul Castellani HervéPerrier Marc Bourliere rodolphe Anty Department of Gastroenterology and Hepatology Hôpital Saint-JosephMarseilleFrance Department of Biostatistics AlphaBio-Biogroup LaboratoryMarseilleFrance Department of Radiology Hôpital Saint-JosephMarseilleFrance Department of Clinical Research Hôpital Saint-JosephMarseilleFrance Medipath EguillesFrance Department of Hepatobiliary Surgery Hôpital Saint-JosephMarseilleFrance Department of Gastroenterology and Hepatology Hôpital Universitaire de l’ArchetNiceFrance

Background and Aims:Hepatocellular carcinoma(HCC)and intrahepatic cholangiocarcinoma(iCCA)have common features and *** real-life study investigated their characteristics,treatment modalities,and ***:This retrospective comparative study was performed in 1,075 patients seen at one tertiary center between January 2008 and December *** survival(OS)was estimated by the Kaplan-Meier *** of iCCAs after histological and radiological review,and molecular profiling was ***:HCCs patients were more likely to have early-stage disease than iCCA *** patients were more likely to be female,especially those patients without cirrhosis(43%vs.17%).Cirrhosis was prominent among HCC patients(89%vs.34%),but no difference in underlying liver disease among cirrhotic patients was *** of HCC patients was 18.4(95%CI:6.4,48.3)months,that of iCCA patients was 7.0(95%CI:3.4,20.1)*** of Barcelona Clinic Liver Cancer C HCC patients was 7.8(95%CI:4.3,14.2)months,that of advanced/metastatic iCCA patients was 8.5(95%CI:5.7,12.3)*** patients treated with sorafenib,OS was longer in HCC patients who received subsequent tyrosine kinase inhibitor *** significant OS difference was found between iCCA patients with and without cirrhosis or according to histological subtype.A targetable molecular alteration was detected in 50%of the iCCA ***:In this French series,cirrhosis was common in iCCA,which showed etiological factors comparable to those of HCC,implying a distinct oncogenic *** entities had a dismal prognosis at advanced ***,systemic therapies sequencing in HCC and molecular profiling in iCCA offer new insights.

关键词： Intrahepatic cholangiocarcinoma Hepatocellular carcinoma Cirrhosis NASH Oncogenic alterations

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