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Burnett Order Stress and Spatially-Dependent Boundary Conditions for the Lattice Boltzmann Method

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Communications in Computational physics 2020年第1期27卷 167-197页

作者： Timothy reis School of Computing and Mathematical Sciences University of GreenwichLondon SE109LSUK

Stress boundary conditions for the lattice Boltzmann equation that are consistent to Burnett order are proposed and imposed using a moment-based *** accuracy of the method with complicated spatially-dependent boundary conditions for stress and velocity is investigated using the regularized lid-driven cavity *** complete set of boundary conditions,which involve gradients evaluated at the boundaries,are implemented locally.A recently-derived collision operator with modified equilibria and velocity-dependent collision rates to reduce the defect in Galilean invariance is also *** results are in excellent agreement with existing benchmark data and exhibit second-order *** lattice Boltzmann stress field is studied and shown to depart significantly from the Newtonian viscous stress when the ratio of Mach to Reynolds numbers is not negligibly small.

关键词： Lattice Boltzmann method moment based boundary conditions Burnett stress reg-ularized cavity

The impact of ancestral population size and incomplete lineage sorting on Bayesian estimation of species divergence times

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Current Zoology 2015年第5期61卷 874-885页

作者： Konstantinos ANGELIS Mario DOS reis Department of Genetics Evolution and Environment University College London Gower Street London WC 1E 6BT UK

Although the effects of the coalescent process on sequence divergence and genealogies are well understood, the vir- tual majority of studies that use molecular sequences to estimate times of divergence among species have failed to account for the coalescent process. Here we study the impact of ancestral population size and incomplete lineage sorting on Bayesian estimates of species divergence times under the molecular clock when the inference model ignores the coalescent process. Using a combination of mathematical analysis, computer simulations and analysis of real data, we find that the errors on estimates of times and the molecular rate can be substantial when ancestral populations are large and when there is substantial incomplete lineage sorting. For example, in a simple three-species case, we find that if the most precise fossil calibration is p.a.ed on the root of the phylogeny, the age of the internal node is overestimated, while if the most precise calibration is p.a.ed on the internal node, then the age of the root is underestimated. In both cases, the molecular rate is overestimated. Using simulations on a phylogeny of nine species, we show that substantial errors in time and rate estimates can be obtained even when dating ancient divergence events. We analyse the hominoid phylogeny and show that estimates of the neutral mutation rate obtained while ignoring the coalescent are too high. Using a coalescent-based technique to obtain geological times of divergence, we obtain estimates of the mutation rate that are within experimental estimates and we also obtain substantially older divergence times within the phylogeny [Current Zoology 61 （5）： 874-885, 2015].

关键词： Ancestral polymorphism Incomplete lineage sorting Divergence time estimation Gene tree Species tree

Extracellular matrix-derived materials for tissue engineering and regenerative medicine:A journey from isolation to characterization and application

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Bioactive Materials 2024年第4期34卷 494-519页

作者： Helena Vilaça-Faria Jennifer Noro Rui L.reis Rogério p.pirraco 3B’s Research Group I3Bs-Research Institute on BiomaterialsBiodegradables and BiomimeticsUniversity of MinhoHeadquarters of the European Institute of Excellence on Tissue Engineering and Regenerative MedicineAveParkParque de Ciência e TecnologiaZona Industrial da Gandra4805-017BarcoGuimarãesPortugal ICVS/3B’s-pT Government Associate Laboratory BragaGuimarãesPortugal

Biomaterial choice is an essential step during the development tissue engineering and regenerative medicine(TERM)*** selected biomaterial must present properties allowing the physiological-like recapitulation of several processes that lead to the reestablishment of homeostatic tissue or organ *** derived from the extracellular matrix(ECM)present many such properties and their use in the field has been steadily *** this growing importance,it becomes imperative to provide a comprehensive overview of ECM biomaterials,encompassing their sourcing,processing,and integration into TERM *** review compiles the main strategies used to isolate and process ECM-derived biomaterials as well as different techniques used for its characterization,namely biochemical and chemical,physical,morphological,and ***,some of their applications in the TERM field are explored and discussed.

关键词： Extracted ECM Extraction methods Characterization ECM-derived applications

Analyzing the economic viability of a large-scale integrated model of municipal solid waste:a study case for the most important Brazilian economic region

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Waste Disposal and Sustainable Energy 2020年第3期2卷 231-247页

作者： Octavio pimenta reis Neto Mechanical Engineering Faculty at State University of Campinas(pDSE/FEM/UNICAMp) Av.Mofarrej275-Apto 212 B1São PauloSP CEP 05311-000Brazil

Despite the National policy for Solid Waste(pNRS)in 2010,nothing has changed to waste disposal in *** to reach 100%of all Municipal Solid Waste(MSW)collected and treated in landfills by Aug.2nd,2014,until nowadays,42%of this total remains in *** the most important national economic region treating its urban waste in landfills,what it has is no more than 4%of recycling and its landfills reaching the *** other ones is getting harder year by year,due to water reservoirs around the region,high freight costs,waste disposal and the severe control of emissions associated with its *** article comes to break the paradigm of investment and profitability proposing an alternative to the land-use,achieving higher rates of *** economic viability,carried out through well-known financial variables and Monte Carlo analysis,has taken into account proven local waste characteristics and market prices for recyclables and energy without *** considered a proposal highly intensive in capital and people,the revenues from the sales would be enough to guarantee the viability of 100%equity with IRR of 33.7%and ROI of 24.5%per year within the confidence of 99%.

关键词： Solid waste Sorting Recycling Waste-to-energy Metropolitan Region of São paulo Energy recovering

Exploring spatial relationships between stream channel features,water depths and flow velocities during flash floods using HEC-GeoRAS and Geographic Information Systems

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Journal of Geographical Sciences 2022年第4期32卷 757-782页

作者： Miguel LEAL Eusébio reis pedro pinto SANTOS Centre of Geographical Studies and Associated Laboratory TERRA Institute of Geography and Spatial PlanningUniversidade de Lisboa1600-276 LisbonPortugal Forest Research Centre and Associated Laboratory TERRA School of AgricultureUniversidade de LisboaTapada da Ajuda1349-017 LisbonPortugal

Water depths and flow velocities decisively influence the damage caused by flash *** Information System(GIS)is a powerful and useful tool,allowing the spatial analysis of results obtained by hydraulic modelling,namely from the HEC-RAS/HEC-GeoRAS *** GIS spatial analysis performed in this study seeks to exp.a.n and quantify the spatial relationships between the stream channel features and flow components during flash flood *** these relationships are generically known,there are few studies exploring this subject in different geographic contexts.A 1D hydraulic model was applied in a small watershed in portugal,providing good results in the definition of floodable areas,water depths and longitudinal *** direct relationship was found between water depths and velocities in the floodable areas;however,negative strong correlations were found between the two flow components along the stream *** slope,channel and flood width,and roughness prove to be highly relevant on the longitudinal variations of water depths and velocities and on the location of maximum *** p.a. discharges and return periods(R;)can change the relationships between water depths and velocities at the same *** can be improved with more accurate elevation data for stream channels and floodp.a.ns.

关键词： flash floods water depth flow velocity geographic information systems(GIS) spatial analysis

prediction of future capacity and internal resistance of Li-ion cells from one cycle of input data

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Energy and AI 2021年第3期5卷 209-216页

作者： Calum Strange Gonçalo dos reis School of Mathematics University of EdinburghThe King’s BuildingsEdinburghEH93FDUK Centro de Matemática e Aplicações(CMA) FCTUNLQuinta da Torre2829-516 CaparicaPortugal

There is a large demand for models able to predict the future capacity retention and internal resistance(IR)of Lithium-ion battery cells with as little testing as *** provide a data-centric model accurately predicting a cell’s entire capacity and IR trajectory from one single cycle of input *** represents a significant reduction in the amount of input data needed over previous *** approach characterises the capacity and IR curve through a small number of key points,which,once predicted and interpolated,describe the full *** this approach the remaining useful life is predicted with an 8.6%mean absolute percentage error when the input-cycle is within the first 100 cycles.

关键词： Capacity degradation Internal resistance degradation prediction of full degradation curve Knee and elbow-points Lithium-ion cells Machine learning Remaining useful life

Biomaterials and emerging technologies for tissue engineering and in vitro models

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Bio-Design and Manufacturing 2024年第3期7卷 237-239页

作者： J.Miguel Oliveira Rui L.reis 3B’s Research Group I3Bs-Research Institute on BiomaterialsBiodegradables and BiomimeticsHeadquarters of the European Institute of Excellence on Tissue Engineering and Regenerative MedicineUniversity of MinhoAveParkZona Industrial da Gandra4805-017 BarcoGuimarãesPortugal ICVS/3B’s-pT Government Associate Laboratory 4806-909 Braga/GuimarãesPortugal

The latest advances in the field of biomaterials have opened new avenues for scientific breakthroughs in tissue engineer-ing which greatly contributed for the successful translation of tissue engineering products into the market/***-materials are easily processed to become similar to natural extracellular matrix,making them ideal temporary supports for mimicking the three-dimensional(3D)microenvironment required for maintaining the adequate cell/tissue functions both in vitro and in vivo^([1]).

关键词： breakthrough biomaterials engineer

Study of risk factors for gastric cancer by populational databases analysis

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World Journal of Gastroenterology 2013年第48期19卷 9383-9391页

作者： Fangio Ferrari Marco Antonio Moura reis Master’s program on Health and Environment University of the Region of Joinville-Univille Joinville Santa Catarina 89219-710 Brazil

AIM:To study the association between the incidence of gastric cancer and populational exposure to risk/protective factors through an analysis of international ***:Open-access global databases concerning the incidence of gastric cancer and its risk/protective factors were identified through an extensive search on the *** its distribution was neither normal nor symmetric,the cancer incidence of each country was categorized according to ranges of percentile *** association of each risk/protective factor with exposure was measured between the extreme ranges of the incidence of gastric cancer(under the 25th percentile and above the 75th percentile)by the use of the Mann-Whitney test,considering a significance level ***:A variable amount of data omission was observed among all of the factors under study.A weak or nonexistent correlation between the incidence of gastric cancer and the study variables was shown by a visual analysis of scatterplot *** contrast,an analysis of categorized incidence revealed that the countries with the highest human development index(HDI)values had the highest rates of obesity in males and the highest consumption of alcohol,tobacco,fruits,vegetables and meat,which were associated with higher incidences of gastric *** was no significant difference for the risk factors of obesity in females and fish ***:Higher HDI values,coupled with a higher prevalence of male obesity and a higher per capita consumption of alcohol,tobacco,fruits,vegetables and meat,are associated with a higher incidence of gastric cancer based on an analysis of populational global data.

关键词： Gastric cancer Risk factors Epidemiologic factors Environment public health

Genetic diversity and structure of Drimys brasiliensis in southern Brazil:insights for conservation

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Journal of Forestry Research 2020年第4期31卷 1325-1332页

作者： Alexandre Mariot Tiago Montagna Maurício Sedrez dos reis Núcleo de pesquisas Em Florestas Tropicais Pós-Graduacāo Em Recursos Genéticos VegetaisCentro de Ciências AgráriasUniversidade Federal de Santa CatarinaRodovia Admar Gonzaga1346FlorianópolisSC 88034-000Brazil

population genetics studies are widely recognized for generating useful knowledge for biodiversity *** date,however,little is known about the levels and distribution of genetic diversity of Drymis brasiliensis(Miers LC),a tree species from the Atlantic ***,in this study,we investigated how genetic diversity is distributed within and among populations of *** from southern Brazil using allozyme markers to genotype reproductive trees(8 populations)and seedlings(3 populations).Furthermore,in two populations,we established two permanent plots(5.1 and 1 ha)to analyze fine-scale genetic structure(FSGS).Studied populations presented low levels of genetic diversity(reproductive=0.085;seedlings=0.054)and high fixation indexes(reproductive=0.396;seedlings=0.231).Genetic divergence among populations was equal to 0.05,which is significant,signaling that few populations can conserve large portions of the species total genetic *** was only detected for one population,when reproductive individuals were separated by less than40 *** genetic diversity combined with high fixation indexes clearly signal a risk of losing ***,conservation efforts should be aimed at enhancing gene flow within the studied populations.

关键词： Atlantic Rainforest Effective population size Fine-scale genetic structure Seed collection