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Challenges of deciphering gastric cancer heterogeneity

World Journal of Gastroenterology 2015年第37期21卷 10510-10527页

作者： petra hudler Institute of Biochemistry Faculty of MedicineUniversity of Ljubljana

Gastric cancer is in decline in most developed countries;however, it still accounts for a notable fraction of global mortality and morbidity related to cancer. Highthroughput methods are rapidly changing our view and understanding of the molecular basis of gastric carcinogenesis. Today, it is widely accepted that the molecular complexity and heterogeneity, both interand intra-tumour, of gastric adenocarcinomas presentsignificant obstacles in elucidating specific biomarkers for early detection of the disease. Although genomewide sequencing and gene expression studies have revealed the intricate nature of the molecular changes that occur in tumour landscapes, the collected data and results are complex and sometimes *** aberrant molecules have already been tested in clinical trials, although their diagnostic and prognostic utilities have not been confirmed thus far. The gold standard for the detection of sporadic gastric cancer is still the gastric endoscopy, which is considered invasive. In addition, genome-wide association studies have confirmed that genetic variations are important contributors to increased cancer risk and could participate in the initiation of malignant *** hypothesis could in part explain the late onset of sporadic gastric cancers. The elaborate interplay of polymorphic low penetrance genes and lifestyle and environmental risk factors requires additional research to decipher their relative impacts on *** purpose of this article is to present details of the molecular heterogeneity of sporadic gastric cancers at the DNA, RNA, and proteome levels and to discuss issues relevant to the translation of basic research data to clinically valuable tools. The focus of this work is the identification of relevant molecular changes that could be detected non-invasively.

关键词： Adenocarcinoma Biological markers Proteomics Molec

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Plant growth and soil microbial community structure of legumes and grasses grown in monoculture or mixture

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Journal of Environmental Sciences 2008年第10期20卷 1231-1237页

作者： MARSCHNER petra Soil and Land System School of Earth and Environmental Sciences The University of AdelaideAdelaide 5005 Australia

A greenhouse pot experiment was conducted to investigate the in?uence of soil moisture content on plant growth and the rhizosphere microbial community structure of four plant species (white clover, alfalfa, sudan grass, tall fescue), grown individually or in a mixture. The soil moisture content was adjusted to 55% or 80% water holding capacity (WHC). The results indicated that the total plant biomass of one pot was lower at 55% WHC. At a given soil moisture, the total plant biomass of white clover and tall ...

关键词： legumes grasses the Chinese Loess Plateau microbial communities phospholipid fatty acid (PLFA)

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The influence of terrain age and altitude on the arthropod communities found on recently deglaciated terrain

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Current Zoology 2014年第2期60卷 203-220页

作者： Markus FRANZEN petra DIEKER UFZ Helmholtz-Centre for Environmental Research Department of Community Ecology Theodor-Lieser-Strasse 4 D-06120Halle (Saale) Germany Centre for Methods Leuphana University Lfineburg Scharnhorststrage 1 D-21335 Liineburg Germany

Climate warming has been more pronounced in the Arctic than elsewhere, resulting in a recent rapid glacial retreat. Over 85% of the Almajallojekna glacier has disappeared over the last 115 years and it is one of the fastest retreating glaciers in Sweden. In 2011 and 2012, at 18 sites in the vicinity of the remaining glacier network, we sampled arthropods and related the species richness, abundance and proportion of herbivores to altitude （ranging from 824 to 1,524 m.a.s.1.） and the age of the site （ranging from 0 to 〉 115 years）. Temperature was measured at six sites and the average annual air temperature ranged from -3.7℃ to 1.1℃. In total, we recorded 3,705 arthropods from 117 species in nine different taxonomic groups. The most abundant and species-rich group was Coleoptera （1,381 individuals, 41 species） followed by Araneae （1,050 individuals, 15 species） and Macrolepidoptera （732 individuals, 17 species）. Only at lower altitudes did the abundance and species richness of arthropods increase with increasing age of the site. The results were consistent among the studied taxonomic groups and when controlling for sam- piing intensity using two different approaches. The proportion of herbivores decreased with increasing age of the site and with increasing altitude. Clearly, altitude appears more important than the age of the site and, at higher altitudes, abundance, species richness and herbivory are low [Current Zoology 60 （2）： 203-220, 2014].

关键词： Climate change Glacier foreland Emerging communities Insects and arachnids Subarctic environment Speciesrichness

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Clay Addition to Sandy Soil Influence of Clay Type and Size on Nutrient Availability in Sandy Soils Amended with Residues Differing in C/N ratio

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Pedosphere 2017年第2期27卷 293-305页

作者： Shermeen TAHIR petra MARSCHNER School of Agriculture Food and Wine The University of Adelaide Adelaide SA 5005 (Australia)

Addition of clay-rich subsoil to sandy soil results in heterogeneous soil with clay peds （2-mm） or finely ground （〈 2 mm） clay soil （FG）, which may affect the nutrient availability. The aim of this study was to assess the effect of clay soil particle size （FG or peds） and properties on nutrient availability and organic C binding in sandy soil after addition of residues with low （young kikuyu grass, KG） or high （faba bean, FB） C/N ratio. Two clay soils with high and low smectite percentage, clay and exchangeable Fe and A1 were added to a sandy soil at a rate of 20% （weight/weight） either as FG or peds. Over 45 d, available N and P as well as microbial biomass N and P concentrations and cumulative respiration were greater in soils with residues of KG than FB. For soils with KG residues, clay addition increased available N and initial microbial biomass C and N concentrations, but decreased cumulative respiration and P availability compared to sandy soil without clay. Differences in measured parameters between clay type and size were inconsistent and varied with time except the increase in total organic C in the 〈 53 μm fraction during the experiment, which was greater for soils with FG than with peds. We concluded that the high exchangeable Fe and A1 concentrations in the low-smectite clay soil can compensate a lower clay concentration and proportion of smectite with respect to binding of organic matter and nutrients.

关键词： Fe and A1 oxides finely ground clay soil mineralogy organic C binding peds smectite

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Soil Respiration, Microbial Biomass C and N Availability in a Sandy Soil Amended with Clay and Residue Mixtures

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Pedosphere 2016年第5期26卷 643-651页

作者： Sharmistha PAL petra MARSCHNER ICAR-Indian Institute of Soil and Water Conservation Research Centre School of Agriculture Food and Wine The University of Adelaide

Crop yields in sandy soils can be increased by addition of clay-rich soil, but little is known about the effect of clay addition on nutrient availability after addition of plant residues with different C/N ratios. A loamy sandy soil （7% clay） was amended with a clay-rich subsoil （73% clay） at low to high rates to achieve soil mixtures of 12%, 22%, and 30% clay, as compared to a control （sandy soil alone） with no clay addition. The sandy-clay soil mixtures were amended with finely ground plant residues at 10 g kg-l： mature wheat （Triticum aestivum L.） straw with a C/N ratio of 68, mature faba bean （Vicia faba L.） straw with a C/N ratio of 39, or their mixtures with different proportions （0% 100%, weight percentage） of each straw. Soil respiration was measured over days 0-45 and microbial biomass C （MBC）, available N, and pH on days 0, 15, 30, and 45. Cumulative respiration was not clearly related to the C/N ratio of the residues or their mixtures, but C use efficiency （cumulative respiration per unit of MBC on day 15） was greater with faba bean than with wheat and the differences among the residue mixtures were smaller at the highest clay addition rate. The MBC concentration was lowest in sole wheat and higher in residue mixtures with 50% of wheat and faba bean in the mixture or more faba bean. Soil N availability and soil pH were lower for the soil mixtures of 22% and 30% clay compared to the sandy soil alone. It could be concluded that soil cumulative respiration and MBC concentration were mainly influenced by residue addition, whereas available N and pH were influenced by clay addition to the sandy soil studied.

关键词： available N C use efficiency C/N ratio cumulative respiration nutrient availability pH plant residues

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Responses of Soil Microbial Activity and Biomass to Salinity After Repeated Additions of Plant Residues

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Pedosphere 2015年第2期25卷 177-185页

作者： Bannur ELMAJDOUB petra MARSCHNER School of Agriculture Food and WineThe Waite Research InstituteThe University of Adelaide Biotechnology Research Centre

Microbial adaptation to salinity can be achieved through synthesis of organic osmolytes,which requires high amounts of energy;however,a single addition of plant residues can only temporarily improve energy supply to soil ***,a laboratory incubation experiment was conducted to evaluate the responses of soil microbes to increasing salinity with repeated additions of plant residues using a loamy sand soil with an electrical conductivity in saturated paste extract(EC_e) of 0.6 dS m^(-1).The soil was kept non-saline or salinized by adding different amounts of NaCl to achieve EC_e of 12.5,25.0 and 50.0 dS m^(-1).The non-saline soil and the saline soils were amended with finely ground pea residues at two rates equivalent to 3.9 and 7.8 g C kg^(-1) soil on days 0,15 *** soils receiving no residues were included as a *** respiration per g C added over 2 weeks after each residue addition was always greater at 3.9 than 7.8 g C kg^(-1) soil and higher in the non-saline soil than in the saline *** the saline soils,the cumulative respiration per g C added was higher after the second and third additions than after the first addition except with3.9 g C kg^(-1) at EC_e of 50 dS m^(_1).Though with the same amount of C added(7.8 g C kg^(-1)),salinity reduced soil respiration to a lesser extent when 3.9 g C kg^(-1) was added twice compared to a single addition of 7.8 g C kg^(-1).After the third residue addition,the microbial biomass C concentration was significantly lower in the soils with EC_e of 25 and 50 dS m^(_1) than in the non-saline soil at3.9 g C kg^(-1),but only in the soil with EC_e of 50 dS m^(-1) at 7.8 g C kg^(-1).We concluded that repeated residue additions increased the adaptation of soil microbial community to salinity,which was likely due to high C availability providing microbes with the energy needed for synthesis of organic osmolytes.

关键词： C availability electrical conductivity microbial biomass C microbial community respiration saline soil

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Precipitation of metal oxide nanoparticles using a miniemulsion technique

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Particuology 2011年第5期9卷 502-505页

作者： Marion Winkelmann Heike petra Schuchmann Institute of Process Engineering in Life Sciences Section I: Food Process Engineering Karlsruhe Institute of Technology

A method to precipitate nanoparticles using a miniemulsion technique is described, in which miniemulsion droplets between 100 and 1000 nm in size serve as nanoreactors enabling both the control of particle formation and particle growth. The application of miniemulsion droplets to synthesise nanoparticles comprises three advantages： first, the size of the precipitated particles is limited by the reactant concentration within the emulsion droplet; second, particle agglomeration is prevented as nanoparticle collision outside the nanoreactor is avoided; and third, easy technical scale up can be realized by increasing emulsion volume and thus the number of nanoreactors, while local conditions within the reactors are not changed, The miniemulsion technique is an easy scalable process which allows defined synthesis of particles by precipitation reactions. The miniemulsion technique involves first the preparation of a stable water-in- oil miniemulsion by high pressure homogenisation. Whereas a water soluble reactant is provided within the aqueous droplets, another oilas well as water-soluble reactant can be introduced to the emulsion after homogenisation. The precipitation reaction is induced by the diffusion of the second reactant into the emulsion droplet. Together with this contribution, a method is described and discussed which uses a high pressure homogenisation process to produce stable water-in-oil miniemulsions serving as a reaction medium to precipitate metal oxides.

关键词： Precipitation Miniemulsion Nanoparticles Metal oxide High pressure homogenisation

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Rheology of Poly(vinyl butyral)Solution Containing Fumed Silica in Correlation with Electrospinning

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Chinese Journal of Polymer Science 2018年第6期36卷 742-748页

作者： petra Peer Martina Polaskova Pavol Suly Institute of Hydrodynamics of the Czech Academy of Sciences Pod Patankou 5166 12 Prague 6Czech Republic Centre of Polymer Systems Tomas Bata University in Zlintrida Tomase Bati 5678760 O1 ZlinCzech Republic Department of Polymer Engineering Faculty of TechnologyTomas Bata University in ZlinVavreckova 27576001 ZlinCzech Republic

The rheological properties in question are influenced by many factors, ranging from the characteristics of the given polymer or solvent to the flowing conditions. The primary focus of this study is to analyse the rheological behaviour of poly（vinyl butyral）—Mowital B 60 H—（PVB） solutions dissolved in methanol and a blend of these with fumed silica nanoparticles. The preparation of the nanofibrous web and the quality of nanofibres were correlated with the rheology of the polymer solution. It was discerned that drastically intensifying shear viscosity and the elasticity of the solution exerted a negligible effect on the formation of fibres, a finding which has rarely been discussed in the literature. The morphologies and structures of the PVB/silica nanofibrous membranes were investigated by scanning electron microscopy, thermogravimetric analysis and Fourier transform infrared spectroscopy.

关键词： Electrospinning Nanofibres Poly(vinyl butyral) Fumed silica Rheology

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Sorption of Water-Extractable Organic Carbon in Various Clay Subsoils: Effects of Soil Properties

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Pedosphere 2016年第1期26卷 55-61页

作者： Trung Ta NGUYEN petra MARSCHNER School of Agriculture Food and Wine The University of Adelaide

Clay-rich subsoils are added to sandy soils to improve crop yield and increase organic carbon （C） sequestration; however, little is known about the influence of clay subsoil properties on organic C sorption and desorption. Batch sorption experiments were conducted with nine clay subsoils with a range of properties. The clay subsoils were shaken for 16 h at 4 ℃with water-extractable organic C （WEOC, 1 224 g C L-1） from mature wheat residue at a soil to extract ratio of 1：10. After removal of the supernatant, the residual pellet was shaken with deionised water to determine organic C desorption. The WEOC sorption was positively correlated with smectite and illite contents, cation exchange capacity （CEC） and total organic C, but negatively correlated with kaolinite content. Desorption of WEOC expressed as a percentage of WEOC sorbed was negatively correlated with smectite and illite contents, CEC, total and exchangeable calcium （Ca） concentrations and clay content, but positively correlated with kaolinite content. The relative importance of these properties varied among soil types. The soils with a high WEOC sorption capacity had medium CEC and their dominant clay minerals were smectite and illite. In contrast, kaolinite was the dominant clay mineral in the soils with a low WEOC sorption capacity and low-to-medium CEC. However, most soils had properties which could increase WEOC sorption as well as those that could decrease WEOC sorption. The relative importance of properties increasing or decreasing WEOC sorption varied with soils. The soils with high desorption had a low total Ca concentration, low-to-medium CEC and low clay content, whereas the soils with low desorption were characterised by medium-to-high CEC and smectite and illite were the dominant clay minerals. We conclude that WEOC sorption and desorption depend not on a single property but rather a combination of several properties of the subsoils in this study.

关键词： cation exchange capacity, clay mineral illite, kaolinite smectite

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Soil Respiration, Microbial Biomass and Nutrient Availability in Soil After Addition of Residues with Adjusted N and P Concentrations

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Pedosphere 2017年第1期27卷 76-85页

作者： Trung Ta NGUYEN petra MARSCHNER School of Agriculture Food and Wine The University of Adelaide Adelaide 5005 (Australia)

Microbial activity and nutrient release are known to be influenced by organic matter properties,but it is difficult to separate the effect of C/N ratio from that of C/P ratio because in most plant residues both ratios are either high or *** incubation experiment was conducted to investigate the effects of reducing the C/N and C/P ratios of slowly decomposable plant residues(young eucalyptus leaves,mature wheat straw,and sawdust) to those of rapidly decomposable residues(young kikuyu shoots) on soil respiration,microbial biomass,and N and P *** C/N and C/P ratios of the former were adjusted to 15 and 89,respectively,by adding N as(NH_4)_2SO_4,P as KH_2PO_4 or both and residues were added at 10 g C kg-1 to a silt *** respiration was measured over21 d;microbial biomass C(MBC) and available N and P were measured on days 0,7,and *** to the unamended soil,addition of kikuyu increased cumulative respiration 20-fold,MBC concentration 4 to 8-fold,and available P concentration up to4-fold,whereas the increase in available N concentration was small and *** respiration and MBC concentration were low in the sawdust-amended soil and were not influenced by reducing the C/N and C/P *** respiration with original wheat and eucalyptus was 30%-40%of that with *** the C/N ratio alone or both C/N and C/P ratios increased cumulative respiration and MBC concentration 2-fold compared to the original wheat and eucalyptus,whereas reducing the C/P ratio had little *** the experiment,the available N concentration after addition of residues with reduced C/N ratio increased in the following order of eucalyptus < wheat < *** independently lowering the C/N and C/P ratios,microbial activity was more limited by C and N than ***,lowering the C/N ratio of very slowly decomposable sawdust had no effect on soil respiration and MBC concentration,suggesting that other properties such as concentration of poor

关键词： C/N ratio C/P ratio microbial activity nutrient immobilisation nutrient mineralisation

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