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Pilot Study on the Intercalibration of a Categorisation System for FAIRer Digital Objects Related to Sensitive Data in the Life Sciences

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Data Intelligence 2022年第2期4卷 196-211页

作者： Christian Ohmann Romain David Mónica Cano Abadia Florence Bietrix Jan-Willem Boiten Steve Canham Maria Luisa Chiusano Walter Dastrù Arnaud Laroquette Dario Longo Michaela Theresia Mayrhofer Maria Panagiotopoulou Audrey Richard pablo emilio verde European Clinical Research Infrastructure Network (ECRIN) 2. European Research Infrastructure on Highly Pathogenic Agents (ERINHA AISBL) 3. Biobanking and Biomolecular Resources Research Infrastructure (BBMRI) 4. European Infrastructure for Translational Medicine (EATRIS) 5. European Advanced Translational Research Infrastructure (EATRIS)/Lygature European Marine Biological Resource Centre (EMBRC)—Department of Agricultural Sciences University Federico II of Naples via Università Department of Molecular Biotechnology and Health Sciences Molecular Imaging Center University of Torino European Marine Biological Resource Centre (EMBRC) 9. European Research Infrastructure for Biological and Biomedical Imaging (Euro-Bio Imaging) Coordination Centre for Clinical Trials Heinrich Heine University Düsseldorf Ringgold standard institution

Sharing sensitive data is a specific challenge for research infrastructures in the field of life sciences. For that reason a toolbox has been developed, providing resources for researchers who wish to share and use sensitive data, to support the workflows for handling these kinds of digital objects. Common and community approved annotations are required to be compliant with FAIR principles(Findability, Accessibility,Interoperability, Reusability). The toolbox makes use of a tagging(categorisation) system, allowing consistent labelling and categorisation of digital objects, in terms relevant to data sharing tasks and activities. A pilot study was performed within the Horizon 2020 project EOSC-Life, in which 2 experts from 6 life sciences research infrastructures were recruited to independently assign tags to the same set of 10 to 25 resources related to sensitive data management and data sharing(in total 110). Summary statistics of agreement and observer variation per research infrastructure are provided. The pilot study has shown that experts were able to attribute tags but in most cases with a considerable observer variation between experts. In the context of CWFR(Canonical Workflow Frameworks for Research), this indicates the necessity for careful definition,evaluation and validation of parameters and processes related to workflow descriptions. The results from this pilot study were used to tackle this issue by revising the categorisation system and providing an updated version.

关键词： Categorisation system CWFR EOSC-Life FAIR Life sciences Sensitive data Tagging Toolbox

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Prevalence and ecological factors affecting the distribution of plant-parasitic nematodes in Prunus groves in Spain

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Journal of Integrative Agriculture 2024年第2期23卷 566-589页

作者： Ilenia Clavero-Camacho Antonio Archidona-Yuste Carolina Cantalapiedra-Navarrete pablo Castillo Juan emilio Palomares-Rius Institute for Sustainable Agriculture(IAS) Spanish National Research Council(CSIC)Córdoba 14004Spain Andalusian Institute of Agricultural and Fisheries Research and Training(IFAPA) Centro Alameda del ObispoCórdoba 14004Spain

A wide survey was conducted to study plant-parasitic nematodes(PPNs)associated with Prunus groves in *** research aimed to determine the prevalence and distribution of PPNs in Prunus groves,as well as the influence of explanatory variables describing soil,climate and agricultural management in structuring the variation of PPNs community composition.A total of 218 sampling sites were surveyed and 84 PPN species belonging to 32 genera were identified based of an integrative taxonomic *** species considered as potential limiting factors in Prunus production,such as Meloidogyne arenaria,***,***,Pratylenchus penetrans and ***,were identified in this *** soil physico-chemical(C,Mg,N,Na,OM,P,pH and clay,loamy sand and sandy loam texture classes),four climate(Bio04,Bio05,Bio13 and Bio14)and four agricultural management variables(grove-use history less than 10 years,irrigation,apricot seedling rootstock,and Montclar rootstock)were identified as the most influential variables driving spatial patterns of PPNs *** particular,younger plantations showed higher values for species richness and diversity indices than groves cultivated for more than 20 years with Prunus *** study increases the knowledge of the distribution and prevalence of PPNs associated with Prunus rhizosphere,as well as on the influence of explanatory variables driving the spatial structure PPNs communities,which has important implications for the successful design of sustainable management strategies in the future in this agricultural system.

关键词： nematodes Meloidogyne Pratylenchus Paratylenchus rootstock distribution soil grove-use almond peach

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Federated Network Intelligence Orchestration for Scalable and Automated FL-Based Anomaly Detection in B5G Networks

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Computers, Materials & Continua 2024年第7期80卷 163-193页

作者： pablo Fernández Saura José M.Bernabé Murcia emilio García de la Calera Molina Alejandro Molina Zarca Jorge Bernal Bernabé Antonio F.Skarmeta Gómez Department of Information and Communications Engineering University of MurciaMurcia30100Spain University Center of Defense Spanish Air Force AcademySan Javier30720Spain

The management of network intelligence in Beyond 5G(B5G)networks encompasses the complex challenges of scalability,dynamicity,interoperability,privacy,and *** are essential steps towards achieving the realization of truly ubiquitous Artificial Intelligence(AI)-based analytics,empowering seamless integration across the entire Continuum(Edge,Fog,Core,Cloud).This paper introduces a Federated Network Intelligence Orchestration approach aimed at scalable and automated Federated Learning(FL)-based anomaly detection in *** leveraging a horizontal Federated learning approach based on the FedAvg aggregation algorithm,which employs a deep autoencoder model trained on non-anomalous traffic samples to recognize normal behavior,the systemorchestrates network intelligence to detect and prevent *** into a B5G Zero-touch Service Management(ZSM)aligned Security Framework,the proposal utilizes multi-domain and multi-tenant orchestration to automate and scale the deployment of FL-agents and AI-based anomaly detectors,enhancing reaction capabilities against *** proposed FL architecture can be dynamically deployed across the B5G Continuum,utilizing a hierarchy of Network Intelligence orchestrators for real-time anomaly and security threat *** includes FL enforcement operations for interoperability and extensibility,enabling dynamic deployment,configuration,and reconfiguration on *** validation of the proposed solution was conducted through dynamic orchestration,FL,and real-time anomaly detection processes using a practical test *** of key performance metrics,leveraging the 5G-NIDD dataset,demonstrates the system’s capability for automatic and near real-time handling of anomalies and attacks,including real-time network monitoring and countermeasure implementation for mitigation.

关键词： Federated learning 6G orchestration anomaly detection security policy

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ACORDE Project:Adaptable Residential Buildings for a New Social Framework

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Journal of Civil Engineering and Architecture 2024年第3期18卷 118-133页

作者： pablo emilio Branchi Acorde espacios adaptablesS.L.y UPNASpain

ACORDE project seeks to maximize buildings´flexibility,conceiving a residential building made of legally independent functional units that can be connected to or disconnected from each other with easy,plug-in facilities,in a way that permits to purchase exactly what the user need,as well as allows future changes for buildings to be adapted to the needs of their occupants,the user decides how to best utilize the space by acquiring or separating functional units along the *** this to be possible,in addition to the legally independent modules concept,a diaphanous and very well organized structure is projected as well as a very solid and efficient envelope to ensure durability and minimal *** efficient occupancy of space leads to an optimal use of energy.

关键词： Adaptability flexibility demographic changes end-uses plug&play

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Pilot Study on the Intercalibration of a Categorisation System for FAlRer Digital Objects Related to Sensitive Data in the Life Sciences

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Data Intelligence 2022年第2期4卷 196-211页

作者： Christian Ohmann Romain David Monica Cano Abadia Florence Bietrix Jan-Willem Boiten Steve Canham Maria Luisa Chiusano Walter Dastru Arnaud Laroquette Dario Longo Michaela Theresia Mayrhofer Maria Panagiotopoulou Audrey Richard pablo emilio verde European Clinical Research Infrastructure Network(ECRIN) Paris 75013France European Research Infrastructure on Highly Pathogenic Agents(ERINHA AISBL) Brussels 10ooBelgium Biobanking and Biomolecular Resources Research Infrastructure(BBMRI) Graz 8010Austria European Infrastructure for Translational Medicine(EATRIS) Amsterdam 1081 HZThe Netherlands European Advanced Translational Research Infrastructure(EATRIS)/Lygature Utrecht 3521 ALThe Netherlands European Marine Biological Resource Centre(EMBRC)Department of Agricultural Sciences University Federico Il of Naples via UniversitaNaples 80138Italy Department of Molecular Biotechnology and Health Sciences Molecular Imaging CenterUniversity of TorinoTorino I-10125Italy European Marine Biological Resource Centre(EMBRC) Paris 75252France European Research Infrastructure for Biological and Biomedical Imaging(Euro-Biolmaging) Torino 10126Italy European Research Infrastructure on Highly Pathogenic Agents(ERINHA AISBL) Brussels 1000Belgium Coordination Centre for Clinical Trials Heinrich Heine University Dusseldorf Ringgold standard institutionNordrhein-Westfalen 40225Germany

Sharing sensitive data is a specific challenge for research infrastructures in the field of life *** that reason a toolbox has been developed,providing resources for researchers who wish to share and use sensitive data,to support the workflows for handling these kinds of digital *** and community approved annotations are required to be compliant with FAIR principles(Findability,Accessibility,Interoperability,Reusability).The toolbox makes use of a tagging(categorisation)system,allowing consistent labelling and categorisation of digital objects,in terms relevant to data sharing tasks and activities.A pilot study was performed within the Horizon 2020 project EOSC-Life,in which 2 experts from 6 life sciences research infrastructures were recruited to independently assign tags to the same set of 10 to 25 resources related to sensitive data management and data sharing(in total 110).Summary statistics of agreement and observer variation per research infrastructure are *** pilot study has shown that experts were able to attribute tags but in most cases with a considerable observer variation between *** the context of CWFR(Canonical Workflow Frameworks for Research),this indicates the necessity for careful definition,evaluation and validation of parameters and processes related to workflow *** results from this pilot study were used to tackle this issue by revising the categorisation system and providing an updated version.

关键词： Sensitive data CWFR EOSC-Life Life sciences Toolbox Categorisation system Tagging FAIR

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Existence of Supercritical Hopf Bifurcation on a Type-Lorenz System

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Journal of Applied Mathematics and Physics 2023年第3期11卷 780-789页

作者： Evodio Muñoz-Aguirre Jorge Alvarez-Mena pablo emilio Calderón-Saavedra Josué Ramírez-Ortega Francisco Gabriel Hernández-Zamora Universidad Veracruzana Xalapa México Universidad del Tolima Ibagué Colombia

In this paper, a system of Lorenz-type ordinary differential equations is considered and, under some assumptions about the parameter space, the presence of the supercritical non-degenerate Hopf bifurcation is demonstrated. The technical tool used consists of the Central Manifold theorem, a well-known formula to calculate the Lyapunov coefficient and Hopf’s Theorem. For particular values of the parameters in the parameter space established in the main result of this work, a graph is presented that describes the evolution of the trajectories, obtained by means of numerical simulation.

关键词： Lorenz-Type System Subcritical Hopf Bifurcation Supercritical Hopf Bifurcation Hopf Theorem

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可适性居住建筑——基于用户需求的空间高效利用

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建筑学报 2013年第1期 36-39页

作者： Branchi pablo emilio 魏力恺西班牙ACR集团西班牙纳瓦拉公立大学天津大学建筑学院天津300072

首先分析近年来社会和人口统计数字的一系列变化,这些变化显示出因房屋空间剩余而导致资源不充分利用的现象,并将促使人们对居住建筑产生新的使用方式;进而介绍了西班牙ACORDE项目提出的一种在开放建筑框架下最大限度提高空间灵活性和... 详细信息

首先分析近年来社会和人口统计数字的一系列变化,这些变化显示出因房屋空间剩余而导致资源不充分利用的现象,并将促使人们对居住建筑产生新的使用方式;进而介绍了西班牙ACORDE项目提出的一种在开放建筑框架下最大限度提高空间灵活性和可适性的新理念。指出该项目希望尽可能提高空间灵活度,通过植入设备将各功能单元分隔成随意连接或隔断的独立空间,从而允许用户根据未来需求实现建筑空间的可适性变化。

关键词： ACORDE项目居住建筑可适性开放建筑建筑生命周期节能

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Comparative Analysis of Biogas Estimation Models versus In-SituMeasurement in a Landfill Site in the State of Mexico, Mexico

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Journal of Environmental Protection 2017年第12期8卷 1460-1473页

作者： pablo emilio Escamilla-García María Elena Tavera-Cortés Francisco Pérez-Soto Universidad Autónoma Chapingo Chapingo México Instituto Politécnico Nacional Mexico City Mexico

This paper shows a comparative analysis of theoretical model for biogas estimations in landfill sites in order to determine reliability, accuracy and efficiency by comparing results with actual data obtained in-situ. The model from the Environmental Protection Agency (EPA) and the Mexican model were selected to estimate biogas generation in a landfill site located in the State of Mexico, Mexico with 36 wells. Both models are based on a first order equation for degradation of organic matter assuming that the biogas generation reaches its maximum after a period of time and then biogas generation decreases exponentially while the organic fraction of waste is consumed. Measurement in-situ, using a landfill gas analyser (GA5000), resulted in values of percentage concentration of landfill gas (CH4, CO2 and O2) with an average Frequency of 35.44 Hz (1/s) and emissions of methane of 3355.99 m3/hr in contrast with 4885.74 m3/hr from EPA model and 6780.56 m3/hr from Mexican model. The experiment evidenced significant variations in estimations versus actual measurements. Authors discuss the aspects and parameters that cause such variations in order to provide a comprehensive analysis which will help decision makers to base waste management strategies in Mexico on reliable data.

关键词： Biogas Methane Landfill Gas Estimation Models

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Valproic Acid,a Drug with Multiple Molecular Targets Related to Its Potential Neuroprotective Action

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Neuroscience & Medicine 2012年第1期3卷 107-123页

作者： Jose Christian Machado Ximenes emilio Crisóstomo Lima verde Maria da Graca Naffah-Mazzacoratti Glauce Socorro de Barros Viana Faculty of Medicine of Juazeiro do Norte(FMJ) Juazeiro do NorteBrazil Federal University of Sao Paulo(UNIFESP) Sao PauloBrazil

Valproic acid (VA) is used worldwide as an antiepileptic drug and a mood stabilizer. Recently, VA was shown to act on cell growth, differentiation and apoptosis, by regulating gene expression at the molecular level, through epigenetic mechanisms. Thus, VA was demonstrated to act on the chromatin remodeling what is a consequence of the drug inhibition of histone deacetylases (HDACs) activity. Other studies uncovered the potential of VA to interfere with multiple regulatory mechanisms besides HDACs, as the GSK3 alpha and beta, Akt, ERK and phosphoinositol pathways, tricarboxylic acid cycle, GABA and OXPHOS system. The review focuses on the mechanisms of action of VA, showing that HDAC inhibitors, as VA, can be successfully used in the treatment of neurodegenerative disorders. This molecule, whose biological activities range from interactions with receptors and ion channels to the regulation of many catalytic reactions, has a central role in cellular cascades that regulate gene expression. Thus, inhibitors of HDACs, by positively affecting both neuronal degeneration and cognitive deficits, appear as promising drugs against various pathological conditions and neurodegenerative diseases. VA is known to present anti-inflammatory and antioxidative properties. And, since inflammation and oxidative stress are common links in neurodegeneration, VA is a drug that, from a clinical point of view, shows a great potential as a candidate for the treatment of neurodegenerative diseases related to excitotoxic events.

关键词： Valproic Acid Histone Deacetylases(HDACs)Inhibitors Inflammation Neuroprotection

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Chromosome Elimination in Intergeneric Hybrid of Oryza sativa×Luziola peruviana

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Agricultural Sciences 2014年第13期5卷 1344-1350页

作者： pablo emilio Moreno Creucí María Caetano Cristian Andrés Olaya Tomas Cipriano Agrono Edgar Alfonso Torres Universidad Nacional de Colombia Palmira Colombia Centro Internacional de Agricultura Tropical CIAT Palmira Colombia

Oryza sativa and Luziola peruviana present a diploid chromosome number of 2n = 24 and basic number x = 12, confirmed by means metaphase chromosomes counts in young root tips of these species. Hybrid plants O. sativa × L. peruviana, with 2n = 24 chromosomes are originated from simple crosses and present abnormalities in the meiotic behavior, chromosomal aberrations and cytological alteration. This genetic incompatibility is caused by different factors as absence of pairing and recombination, different spindles arrangements, cytoskeleton instability, apoptosis process and chromosomal elimination, leading to micronuclei formation, unbalanced gametes and sterile pollen grains. The chromosome elimination is established as a dynamic process of stabilization of the genome that occurs during hybridization. It is a common phenomenon among intergeneric crosses and corresponds to cytoplasmic and nuclear bodies that reflect chromosomal aberrations resulting from the combination of two genomes with high genetic distance. The genomic conflict occurs in meiosis, possibly by asynchronism and cell cycle length of the genomes involved, or by time differences in replication between parental species leading to strand breaks and genomic rearrangements.

关键词： Rice Luziola Unbalanced Gametes Meiosis

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