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Modeling West Nile Virus transmission in birds and humans:Advantages of using a cellular automata approach

Infectious Disease Modelling 2024年第1期9卷 278-297页

作者： Baki Cissé David r.Lapen KChalvet-Monfray nicholas H.Ogden Antoinette Ludwig Public Health Sciences Division National Microbiology LaboratoryPublic Health Agency of CanadaSt-HyacintheCanada Groupe de recherche enÉpidémiologie des Zoonoses et SantéPublique(GrEZOSP) Facultéde Médecine VétérinaireUniversitéde MontréalSaint-HyacintheQuébecCanada Ottawa research and Development Centre Science and Technology BranchAgriculture and Agri-Food CanadaOttawaK1A 0C6Canada Universitéde Lyon INRAEVetAgro SupUMR EPIAMarcy l’EtoileFrance UniversitéClermont Auvergne INRAEVetAgro SupUMR EPIASaint-Genès-ChampanelleFrance

In Canada,the periodic circulation of West Nile Virus(WNV)is difficult to predict and,beyond climatic factors,appears to be related to the migratory movements of infected birds from the southern United *** hypothesis has not yet been explored in a spatially distributed *** main objective of this work was to develop a spatially explicit dynamic model for the transmission of WNV in Canada,that allows us to explore non-climate related hypotheses associated with WNV transmission.A Cellular Automata(CA)approach for multiple hosts(birds and humans)is used for a test region in eastern Ontario,*** tool is designed to explore the role of host and vector spatial heterogeneity,host migration,and vector feeding *** developed a spatialized compartmental SEIrDS-SEI model for WNV transmission with a study region divided into 4 rectangular *** used 2010–2021 bird data from the eBird project and 2010–2019 mosquito data collected by Ontario Public Health to mimic bird and mosquito seasonal *** considered heterogeneous bird densities(high and low suitability areas)and homogeneous mosquito and human *** high suitability areas for birds,we identified 5 entry points for WNV-infected *** compared our simulations with pools of WNV-infected field collected *** and sensitivity analyses were performed using MATLAB *** results showed good correspondence between simulated and observed epidemics,supporting the validity of our model assumptions and *** analysis showed that a 5%increase or decrease in each parameter of our model except for the biting rate of bird by mosquito(c^(B,M)and mosquito natural mortality rate(d^(M)),had a very limited effect on the total number of cases(newly infected birds and humans),prevalence peak,or date of *** demonstrate the utility of the CA approach for studying WNV transmission in a heterogeneous landscape with multiple hosts.

关键词： Cellular automata Mosquito-borne diseases SEIrDS-SEI modeling West Nile Virus

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Dermatological conditions of aquatic athletes

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World Journal of Dermatology 2015年第1期4卷 8-15页

作者： Collin M Blattner Viktoryia Kazlouskaya Garrett C Coman nicholas r blickenstaff Jenny E Murase Department of Medicine Des Moines University Ackerman Academy of Dermatopa-thology Department of Medicine University of Utah School of MedicineSalt Lake CityUT 84132 United States Department of Dermatology Palo Alto Foundation Medical Group Palo Alto and Mountain View CA 94040 United States Department of Dermatology University of California San Francisco

Numerous manuscripts have described dermatologic conditions commonly seen in swimmers. This review provides an update on water dermatoses and discusses newly described conditions such as allergic contact dermatitis to chemical ingredients like potassium peroxymonosulate in pool water. In order to organize water related skin conditions, we have divided the skin conditions into a number of categories. The categories described include infectious and organism-related dermatoses, irritant and allergic dermatoses, and suninduced dermatoses. The vast majority of skin conditions involving the water athlete result from chemicals and bacteria in the differing aquatic environments. When considering the effects of swimming on the skin, it is also useful to differentiate between exposure to freshwater(lakes, ponds and swimming pools) and exposure to saltwater. The risk of melanoma amongst swimmers is increased, and the use of SPF 30 or greater sunscreen and protective clothing is highly recommended. Swimmers should be reminded to generously apply sunscreen and be instructed on proper sunscreen usage. This review will serve as a guide for dermatologists, athletes, coaches, and other medical professionals in recognition and treatment of these conditions. We also intend for this review to provide dermatologist with a basic framework for the diagnosis and treatment of a few rarely described dermatological conditions in swimmers.

关键词： Aquatics Dermatitis Athletes Practice Gaps Freshwater dermatitis

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Verification and Validation of High-resolution Inviscid and Viscous Conical Nozzle Flows

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Communications on Applied Mathematics and Computation 2024年第1期6卷 533-549页

作者： Luciano K.Araki rafael B.de r.Borges nicholas Dicati P.da Silva Chi-Wang Shu Department of Mechanical Engineering Federal University of ParanáCuritiba81531-980ParanáBrazil Mathematics and Statistics Institute Rio de Janeiro State UniversityRio de Janeiro20550-900Rio de JaneiroBrazil Department of Mechanical Engineering State University of MaringáMaringá87020-900ParanáBrazil Division of Applied Mathematics Brown UniversityProvidenceRI02912USA

Capturing elaborated flow structures and phenomena is required for well-solved numerical *** finite difference methods allow simple discretization of mesh and model ***,they need simpler meshes,e.g.,*** inverse Lax-Wendroff(ILW)procedure can handle complex geometries for rectangular ***-resolution and high-order methods can capture elaborated flow structures and *** also have strong mathematical and physical backgrounds,such as positivity-preserving,jump conditions,and wave propagation *** perceive an effort toward direct numerical simulation,for instance,regarding weighted essentially non-oscillatory(WENO)***,we propose to solve a challenging engineering application without turbulence *** aim to verify and validate recent high-resolution and high-order *** check the solver accuracy,we solved vortex and Couette ***,we solved inviscid and viscous nozzle flows for a conical *** employed the finite difference method,positivity-preserving Lax-Friedrichs splitting,high-resolution viscous terms discretization,fifth-order multi-resolution WENO,ILW,and third-order strong stability preserving *** showed the solver is high-order and captured elaborated flow structures and *** can see oblique shocks in both nozzle *** the viscous flow,we also captured a free-shock separation,recirculation,entrainment region,Mach disk,and the diamond-shaped pattern of nozzle flows.

关键词： High-resolution Compressible Navier-Stokes Free-shock separation Nozzle flow

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recent advances in intermediate-temperature CO_(2) capture: Materials,technologies and applications

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Journal of Energy Chemistry 2024年第3期90卷 435-452,I0010页

作者： Chengbo Zhao Leiming Wang Liang Huang nicholas M.Musyoka Tianshan Xue Jabor rabeah Qiang Wang Engineering research Center for Water Pollution Source Control&Eco-remediation College of Environmental Science and EngineeringBeijing Forestry UniversityBeijing 100083China State Key Laboratory of Efficient Production of Forest resources Beijing Forestry UniversityBeijing 100083China China Machinery Huanyu Certification and Inspection Co. Ltd.Beijing 102609China Nottingham Ningbo China Beacons of Excellence research and Innovation Institute University of Nottingham Ningbo ChinaNingbo 315100ZhejiangChina Institute of Atmospheric Environment Chinese Research Academy of Environmental SciencesBeijing 100012China Leibniz-Institut für Katalyse e.V. Albert-Einstein-Str.29aRostock D-18059Germany

Carbon capture,utilization and storage(CCUS) is widely recognized as a vital strategy for mitigating the impact of human induced climate *** various CO_(2) adsorbents,intermediate-temperature solid adsorbents have garnered significant attention due to their potential applications in hydrogen utilization,specifically in the water gas shift,steam reforming and gasification *** processes are crucial for achieving carbon *** laboratory-level studies have showcased the high adsorption capacity of these materials via various synthesis and modification methods,their practical application in complex industrial environments remains challenging,impeding the commercialization *** review aims to critically summarize the recent research progress made in intermediatetemperature(200-400℃) solid CO_(2) adsorbents,particularly focusing on indicators such as cyclability,gas selectivity,and formability,which play vital roles in industrial application ***,we provide an overview of laboratory-level advanced technologies specifically tailored for industrial ***,we highlight several industrial-ready advanced technologies that can pave the way for overcoming the challenges associated with large-scale *** insights provided by this review aim to assist researchers in identifying the most relevant research directions for industrial *** promoting advances in the application of solid adsorbents,we strive to facilitate the ultimate goal of achieving carbon neutrality.

关键词： Intermediate-temperature CO_(2) capture MgO LDHs Industrialization

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HDPairFinder:A data processing platform for hydrogen/deuterium isotopic labeling-based nontargeted analysis of trace-level amino-containing chemicals in environmental water

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Journal of Environmental Sciences 2024年第2期136卷 583-593页

作者： Tingting Zhao Kristin Carroll Caley B.Craven nicholas J.P.Wawryk Shipei Xing Jian Guo Xing-Fang Li Tao Huan Department of Chemistry Faculty of ScienceUniversity of British ColumbiaVancouver Campus2036 Main MallVancouverBritish ColumbiaV6T 1Z1Canada Division of Analytical and Environmental Toxicology Department of Laboratory Medicine and PathologyFaculty of Medicine and DentistryUniversity of AlbertaEdmontonAlberta T6G 2G3Canada

The combination of hydrogen/deuterium(H/D)formaldehyde-based isotopic methyl labeling with solid-phase extraction and high-performance liquid chromatography–high resolution mass spectrometry(HPLC-HrMS)is a powerful analytical solution for nontargeted analysis of trace-level amino-containing chemicals in water *** the huge amount of chemical information generated in HPLC-HrMS analysis,identifying all possible H/Dlabeled amino chemicals presents a significant challenge in data *** address this,we designed a streamlined data processing pipeline that can automatically extract H/D-labeled amino chemicals from the raw HPLC-HrMS data with high accuracy and ***,we developed a cross-correlation algorithm to correct the retention time shift resulting from deuterium isotopic effects,which enables reliable pairing of H-and D-labeled ***,we implemented several bioinformatic solutions to remove false chemical features generated by in-source fragmentation,salt adduction,and natural13C ***,we used a data mining strategy to construct the AMINES library that consists of over 38,000 structure-disjointed primary and secondary amines to facilitate putative compound ***,we integrated these modules into a freely available r program,*** rationale of each module was justified and its performance tested using experimental H/D-labeled chemical standards and authentic water *** further demonstrated the application of HDPairFinder to effectively extract N-containing contaminants,thus enabling the monitoring of changes of primary and secondary N-compounds in authentic water *** is a reliable bioinformatic tool for rapid processing of H/D isotopic methyl labeling-based nontargeted analysis of water samples,and will facilitate a better understanding of N-containing chemical compounds in water.

关键词： Isotope labeling Nontargeted analysis reactive N-compounds HPLC-HrMS Source water

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Considerations for the use of porcine organ donation models in preclinical organ donor intervention research

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Animal Models and Experimental Medicine 2024年第3期7卷 283-296页

作者： Frazer I.Heinis Shaheed Merani nicholas W.Markin Kim F.Duncan Michael J.Moulton Lance Fristoe William E.Thorell raechel A.Sherrick Tami r.Wells Matthew T.Andrews Marian Urban School of Natural resources Institute of Agriculture and Natural ResourcesUniversity of Nebraska-LincolnLincolnNebraskaUSA Division of Transplantation and Vascular Surgery Department of SurgeryUniversity of Nebraska Medical CenterOmahaNebraskaUSA Department of Anesthesiology University of Nebraska Medical CenterOmahaNebraskaUSA Division of Cardiothoracic Surgery Department of SurgeryUniversity of Nebraska Medical CenterOmahaNebraskaUSA Clinical Perfusion Nebraska Medicine-Nebraska Medical CenterOmahaNebraskaUSA Department of Neurosurgery University of Nebraska Medical CenterOmahaNebraskaUSA Nutrition and Health Sciences College of Education and Human SciencesUniversity of Nebraska-LincolnLincolnNebraskaUSA Department of Comparative Medicine University of Nebraska Medical CenterOmahaNebraskaUSA

Use of animal models in preclinical transplant research is essential to the optimization of human allografts for clinical *** models of organ donation and preservation help to advance and improve technical elements of solid organ recovery and facilitate research of ischemia-reperfusion injury,organ preservation strategies,and future donor-based *** considerations include cost,public opinion regarding the conduct of animal research,translational value,and relevance of the animal model for clinical *** present an overview of two porcine models of organ donation:donation following brain death(DBD)and donation following circulatory death(DCD).The cardiovascular anatomy and physiology of pigs closely resembles those of humans,making this species the most appropriate for pre-clinical *** are also considered a potential source of organs for human heart and kidney *** is imperative to minimize animal loss during procedures that are surgically *** present our experience with these models and describe in detail the use cases,procedural approach,challenges,alternatives,and limitations of each model.

关键词： animal model brain death circulatory death organ transplantation

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Schistosomiasis transmission in Zimbabwe:Modelling based on machine learning

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Infectious Disease Modelling 2024年第4期9卷 1081-1094页

作者： Hong-Mei Li Jin-Xin Zheng nicholas Midzi Masceline Jenipher Mutsaka-Makuvaza Shan Lv Shang Xia Ying-jun Qian Ning Xiao robert Berguist Xiao-Nong Zhou National Institute of Parasitic Diseases Chinese Center for Disease Control and Prevention(Chinese Center for Tropical Diseases Research)NHC Key Laboratory of Parasite and Vector BiologyWHO Collaborating Centre for Tropical DiseasesNational Center for International Research on Tropical DiseasesShanghai200025China National Institute of Health research Ministry of Health and Child CareHarareZimbabwe University of rwanda College of Medicine and Health SciencesSchool of Medicine and PharmacyDepartment of Microbiology and ParasitologyRwanda Ingerod 407 SE-45494BrastadSweden

Zimbabwe,located in Southern Africa,faces a significant public health challenge due to *** investigated this issue with emphasis on risk prediction of schistosomiasis for the entire *** this end,we reviewed available data on schistosomiasis in Zimbabwe from a literature search covering the 1980-2022 period considering the potential impact of 26 environmental and socioeconomic variables obtained from public *** studied the population requiring praziquantel with regard to whether or not mass drug administration(MDA)had been regularly *** machinelearning algorithms were tested for their ability to predict the prevalence of schistosomiasis in Zimbabwe based on the mean absolute error(MAE),the root mean squared error(rMSE)and the coefficient of determination(r2).The findings revealed different roles of the 26 factors with respect to transmission and there were particular variations between Schistosoma haematobium and *** *** found that the top-five correlation factors,such as the past(rather than current)time,unsettled MDA implementation,constrained economy,high rainfall during the warmest season,and high annual precipitation were closely associated with higher *** prevalence,while lower elevation,high rainfall during the warmest season,steeper slope,past(rather than current)time,and higher minimum temperature in the coldest month were rather related to higher *** *** random forest(rF)algorithm was considered as the formal best model construction method,with MAE=0.108;rMSE=0.143;and r^(2)=0.517 for ***,and with the corresponding figures for *** being 0.053;0.082;and *** on this optimal model,the current total schistosomiasis prevalence in Zimbabwe under MDA implementation was 19.8%,with that of *** at 13.8% and that of *** at 7.1%,requiring annual MDA based on a population of 3,003,*** MDA,the current total schistosomiasis prevalence would

关键词： Machine-learning Transmission risk model Schistosomiasis Zimbabwe

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A General Synthesis Method for Covalent Organic Framework and Inorganic 2D Materials Hybrids

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Precision Chemistry 2024年第8期2卷 398-405页

作者： Yifan Zhu Yunrui Yan Yuren Feng Yifeng Liu Chen-Yang Lin Qing Ai Tianshu Zhai Bongki Shin rui Xu Hongchen Shen Qiyi Fang Xiang Zhang Dayanni Bhagwandin Yimo Han Hanyu Zhu nicholas r.Glavin Pulickel M Ajayan Qilin Li Jun Lou Department of Materials Science and Nanoengineering Rice UniversityHoustonTexas 77005United States Department of Civil and Environmental Engineering Rice UniversityHoustonTexas 77005United States NSF Nanosystems Engineering research Center Nanotechnology-Enabled Water Treatment Rice UniversityHoustonTexas 77005United States UES Inc.BeavercreekOhio 45432United States Materials and Manufacturing Directorate Air Force Research LaboratoryWright-Patterson AFBOhio 45433United States Department of Chemistry Rice UniversityHoustonTexas 77005United States

Two-dimensional(2D)inorganic/organic hybrids provide a versatile platform for diverse applications,including electronic,catalysis,and energy storage *** recent surge in 2D covalent organic frameworks(COFs)has introduced an organic counterpart for the development of advanced 2D organic/inorganic hybrids with improved electronic coupling,charge separation,and carrier ***,existing synthesis methods have primarily focused on few-layered film structures,which limits scalability for practical ***,we present a general synthesis approach for a range of COF/inorganic 2D material hybrids,utilizing 2D inorganic materials as both catalysts and inorganic building *** leveraging the intrinsic Lewis acid sites on the inorganic 2D materials such as hexagonal boron nitride(hBN)and transition metal dichalcogenides,COFs with diverse functional groups and topologies can grow on the surface of inorganic 2D *** controlled 2D morphology and excellent solution dispersibility of the resulting hybrids allow for easy processing into films through vacuum *** proof of concept,hBN/COF films were employed as filters for rhodamine 6G removal under flow-through conditions,achieving a removal rate exceeding 93%.The present work provides a simple and versatile synthesis method for the scalable fabrication of COF/inorganic 2D hybrids,offering exciting opportunities for practical applications such as water treatment and energy storage.

关键词： Covalent organic frameworks Transition-metal dichalcogenides Lewis acid catalysts Hexagonal boron nitride Hybrid Materials

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Analysis of the combined effect of rs699 and rs5051 on angiotensinogen expression and hypertension

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Chronic Diseases and Translational Medicine 2024年第2期10卷 102-117页

作者： nicholas r.Powell Tyler Shugg Jacob Leighty Matthew Martin rolf P.Kreutz Michael T.Eadon Dongbing Lai Tao Lu Todd C.Skaar Division of Clinical Pharmacology Department of MedicineSchool of MedicineIndiana UniversityIndianapolisIndianaUSA Department of Pharmacology and Toxicology School of MedicineIndiana UniversityIndianapolisIndianaUSA Department of Cardiology School of MedicineKrannert Institute of CardiologyIndiana UniversityIndianapolisIndianaUSA Division of Nephrology Department of MedicineSchool of MedicineIndiana UniversityIndianapolisIndianaUSA Department of Medical and Molecular Genetics School of MedicineIndiana UniversityIndianapolisIndianaUSA

Background Hypertension(HTN)involves genetic variability in the renin-angiotensin system and influences antihypertensive *** previously reported that angiotensinogen(AGT)messenger rNA(mrNA)is endogenously bound by mir-122-5p and rs699 A>G decreases reporter mrNA in the microrNA functional-assay *** AGT promoter variant rs5051 C>T is in linkage disequilibrium(LD)with rs699 A>G and increases AGT *** independent effect of these variants is understudied due to their LD therefore we aimed to test the hypothesis that increased AGT by rs5051 C>T counterbalances AGT decreased by rs699 A>G,and when these variants occur independently,it translates to HTN-related *** We used in silico,in vitro,in vivo,and retrospective models to test this *** In silico,rs699 A>G is predicted to increase mir-122-5p binding affinity by 3%.Mir-eCLIP results show rs699 is 40–45 nucleotides from the strongest microrNA-binding site in the AGT ***,rs699 A>G increases AGT mrNA in an AGT-plasmid-cDNA HepG2 expression ***-Tissue Expression(GTEx)and UK Biobank analyses demonstrate liver AGT expression and HTN phenotypes are not different when rs699 A>G occurs independently from rs5051 C>***,GTEx and the in vitro experiments suggest rs699 A>G confers cell-type-specific effects on AGT mrNA abundance,and suggest paracrine renal renin-angiotensin-system perturbations could mediate the rs699 A>G associations with *** We found that rs5051 C>T and rs699 A>G significantly associate with systolic blood pressure in Black participants in the UK Biobank,demonstrating a fourfold larger effect than in White *** studies are warranted to determine if altered antihypertensive response in Black individuals might be due to rs5051 C>T or rs699 A>*** like this will help clinicians move beyond the use of race as a surrogate for genotype.

关键词： angiotensinogen genetic and genomic medicine hypertension rs699

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Single and multiplexed gene repression in solventogenic Clostridium via Cas12a-based CrISPr interference

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Synthetic and Systems Biotechnology 2023年第1期8卷 148-156页

作者： rochelle Carla Joseph nicholas r.Sandoval Department of Chemical and Biomolecular Engineering Tulane UniversityNew OrleansLA70118United States

The Gram-positive,spore-forming,obligate anaerobic firmicute species that make up the Clostridium genus have broad feedstock consumption capabilities and produce value-added metabolic products,but genetic manipulation is difficult,limiting their broad ***-Cas systems have recently been applied to Clostridium species,primarily using Cas9 as a counterselection marker in conjunction with plasmid-based homologous *** interference is a method that reduces gene expression of specific genes via precision targeting of a nuclease deficient Cas effector ***,we develop a dCas12a-based CrISPr interference system for transcriptional gene repression in multiple mesophilic Clostridium *** show the Francisella novicida Cas12a-based system has a broader applicability due to the low GC content in Clostridium species compared to CrISPr Cas systems derived from other *** demonstrate>99%reduction in transcript levels of targeted genes in Clostridium acetobutylicum and>75%reduction in Clostridium *** also demonstrate multiplexed repression via use of a single synthetic CrISPr array,achieving 99%reduction in targeted gene expression and elucidating a unique metabolic profile for their reduced ***,this work builds a foundation for high throughput genetic screens without genetic editing,a key limitation in current screening methods used in the Clostridium community.

关键词： CrISPr Cas12a Clostridium CrISPri

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