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Large-scale genome-wide SNP analysis reveals the rugged(and ragged)landscape of global ancestry,phylogeny,and demographic history in chicken breeds

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Journal of Zhejiang University-Science B(Biomedicine & Biotechnology) 2024年第4期25卷 324-340页

作者： natalia V.DeMeNTIeVA Yuri S.SHCHeRBAKOV Olga I.STANISHeVSKAYA Anatoly B.VAKHRAMeeV Tatiana A.LARKINA Artem P.DYSIN Olga A.NIKOLAeVA Anna e.RYABOVA Anastasiia I.AZOVTSeVA Olga V.MITROFANOVA Grigoriy K.PeGLIVANYAN natalia R.ReINBACH Darren K.GRIFFIN Michael N.ROMANOV Russian Research Institute of Farm Animal Genetics and Breeding-Branch of the L.K.ernst Federal Research Centre for Animal Husbandry.Pushkin St.Petersburg196601Russia School of Biosciences University of KentCanterburyCT27NJUK L.K.ernst Federal Research Center for Animal Husbandry DubrovitsyPodolskMoscow Oblast142132Russia

The worldwide chicken gene pool encompasses a remarkable,but shrinking,number of divergently selected breeds of diverse *** study was a large-scale genome-wide analysis of the landscape of the complex molecular architecture,genetic variability,and detailed structure among 49 *** populations represent a significant sample of the world's chicken breeds from europe(Russia,Czech Republic,France,Spain,UK,etc.),Asia(China),North America(USA),and Oceania(Australia).Based on the results of breed genotyping using the Illumina 60K single nucleotide polymorphism(SNP)chip,a bioinformatic analysis was carried *** included the calculation of heterozygosity/homozygosity statistics,inbreeding coefficients,and effective population *** also included assessment of linkage disequilibrium and construction of phylogenetic *** multidimensional scaling,principal component analysis,and ADMIXTURe-assisted global ancestry analysis,we explored the genetic structure of populations and subpopulations in each *** overall 49-population phylogeny analysis was also performed,and a refined evolutionary model of chicken breed formation was proposed,which included egg,meat,dual-purpose types,and ambiguous *** a large-scale survey of genetic resources in poultry farming using modern genomic methods is of great interest both from the viewpoint of a general understanding of the genetics of the domestic chicken and for the further development of genomic technologies and approaches in poultry *** general,whole genome SNP genotyping of promising chicken breeds from the worldwide gene pool will promote the further development of modern genomic science as applied to poultry.

关键词： Chicken genome diversity Single nucleotide polymorphism(SNP)analysis Gene pool Global ancestry Phylogeny Demographic history

Systemic juvenile idiopathic arthritis–associated lung disease: A retrospective cohort study

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World Journal of Clinical Pediatrics 2024年第1期13卷 73-83页

作者： Konstantin e Belozerov natalia M Solomatina eugenia A Isupova Alla A Kuznetsova Mikhail M Kostik Department of Pediatric Saint-Petersburg State Pediatric Medical UniversitySaint-Petersburg 194100Russia St.Petersburg State Budgetary Institution of Health Care Children's City Polyclinic No.29 of the Kalininsky District of St.PetersburgSt.Petersburg 195274Russia Research Laboratory of Autoimmune and Autoinflammatory Diseases World-Class Research Centre for Personalized MedicineAlmazov National Medical Research CentreSt.Petersburg 197341Russia

BACKGROUND Lung damage in systemic juvenile arthritis(sJIA)is one of the contemporary topics in pediatric *** previous studies showed the severe course and fatal outcomes in some *** information about interstitial lung disease(ILD)in the sJIA is scarce and limited to a total of 100 *** To describe the features of sJIA patients with ILD in *** In the present retrospective cohort study,information about 5 patients less than 18-years-old with sJIA and ILD were *** diagnosis of sJIA was made according to the current 2004 and new provisional International League of Associations for Rheumatology criteria *** was diagnosed with chest computed tomography with the exclusion of other possible reasons for concurrent lung *** activation syndrome(MAS)was diagnosed with HLH-2004 and 2016 eULAR/ACR/PRINTO Classification Criteria and hScores were calculated during the lung *** The onset age of sJIA ranged from 1 year to 10 *** time interval before ILD ranged from 1 mo to 3 *** disease course was characterized by the prevalence of the systemic features above articular involvement,intensive rash(100%),persistent and very active MAS(hScore range:194-220)with transaminitis(100%),and respiratory symptoms(100%).Only 3 patients(60%)developed a clubbing *** patients(100%)had pleural effusion and 4 patients(80%)had pericardial effusion at the disease *** patients(40%)developed pulmonary arterial ***-related reactions to tocilizumab were observed in 3(60%)of the *** patient with trisomy 21 had a fatal disease *** of the remaining patients had sJIA remission and 2 patients had *** disease improved in 3 patients(75%),but 1 of them had initial deterioration of lung *** patient who has not achieved the sJIA remission had the progressed course of *** cases of hyper-eosinophilia were *** patients(80%)received

关键词： Systemic juvenile arthritis Interstitial lung disease Canakinumab Tocilizumab Interleukin-6 Interleukin-1

Antioxidants enzymes Activities and NO Levels in Hemodialysis and Continuous Ambulatory Peritoneal Dialysis—A Comparative Study

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Journal of Biosciences and Medicines 2024年第2期12卷 50-59页

作者： natalia Cristina Aparecida Ribeiro e Ribeiro Anderson Martins Tavares Jaslana Hainfellner da Silva João Paulo Lima Daher Salim Kanaan Luciene de Carvalho Cardoso-Weide Laboratory of Neuroplasticity Neurobiology Department Biology Institute Federal Fluminense University Rio de Janeiro Brazil Postgraduate Program in Medical Sciences School of Medicine Federal Fluminense University Rio de Janeiro Brazil School of Biology UNIVERSO—Salgado de Oliveira University Rio de Janeiro Brazil Department of Pathology Faculty of Medicine Federal Fluminense University Rio de Janeiro Brazil

It consists of a retrospective study with twenty-two individuals diagnosed with DRC: fourteen HD and eight CAPD, followed up in the dialysis center of Antonio Pedro University Hospital (HUAP) of Fluminense Federal University (UFF), between 2015 and 2017. Fifteen healthy control (HC) subjects were included, without diagnosed CKD. Patients with HIV positive, hepatitis A, B, and C, pregnant, cancer, smokers, alcoholics and those exposed to X-rays in the last 3 months, were excluded. Objectives: As oxidative stress and endothelial dysfunction may be linked to the higher prevalence of CVD in CKD patients, we measured the activities of the antioxidants enzymes: SOD and GPx and total NO levels in the plasma and serum of end-stage CKD patients undergoing dialysis therapy, comparing with the HC group. Methods: Quantification of NO levels was performed by fluorometric kit, while activities of SOD and GPx were determined using kinetic methods. Results: We found higher plasma SOD activity in HD (8.58 U/ml) and CAPD (10.14 U/ml), compared to C (3.73 U/ml) group, while GPx activity was decreased in HD (115.38 nmol/h/ml) and CAPD (122.76 nmol/h/ml) groups compared to HC group (275.83 nmol/h/ml). Total serum NO concentration was decreased in HD (14.09 pmol/μl) and CAPD (10.26 pmol/μl), compared to non-CKD patients (49.65 pmol/μl). Conclusion: Decreased total serum NO and GPx activities may lead to endothelial dysfunction and consequently a higher prevalence of CVD in CKD patients.

关键词： Hemodialysis CAPD SOD GPx NO

56 Years of the Marburg Virus—A Review of Therapeutics

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Open Journal of epidemiology 2024年第2期14卷 273-283页

作者： Michael M. Toza emmanuel Imangolwa natalia Shakela Ferdinand Ndubi Hanzoma Hatwiko Christabel N. Hikaambo Department of Pharmacy School of Health Sciences University of Zambia Lusaka Zambia Department of Biology Chemistry and Physics School of Health and Applied Sciences Namibia University of Science and Technology Windhoek Namibia Department of Pharmaceutical Chemistry and Pharmaceutics School of Pharmacy Kabarak University Nakuru Kenya Department of Physiological Sciences School of Medicine and Health Sciences Mulungushi University Livingstone Zambia

Background: The Marburg virus (MARV) is the causative agent of Marburg virus disease (MVD). This filovirus first appeared in 1967 and has since caused several outbreaks with case fatality rates between 23% and 90%. The earliest cases of MVD are thought to be caused by exposure to an infected animal, either a reservoir host (some bat species, e.g., Rousettus aegyptiacus) or a spill-over host, such as non-human primates. The virus is spread between people by direct contact with blood or other bodily fluids (including saliva, sweat, faeces, urine, tears, and breast milk) from infected individuals. Despite the high fatality rate, the Marburg virus has no vaccine or drug treatment. Recent outbreaks of the virus in 2023 in Tanzania and equatorial Guinea have reignited the need to develop effective therapeutics, especially in the wake of the COVID-19 pandemic. Purpose: This review seeks to highlight the drug discovery efforts aimed at developing vaccines or possible treatments as potential therapeutics. Several existing antiviral agents are being probed, and vaccines are in pre-clinical and clinical stages. Natural products are also an important source of possible drugs or lead compounds and when coupled with computational techniques, these strategies offer possible therapeutics for the Marburg virus, especially in Africa, which has a high disease burden. Methods: Using the search engines Google Scholar and PubMed;keywords e.g. Marburg virus, Marburg treatments, Marburg virus drug discovery were utilized. Several results were yielded, and articles published in recent years were accepted into the final *** and Conclusion: This study shows there is a growing interest in therapeutics for the Marburg virus, especially with the recent outbreaks and pandemic preparedness. Initiatives that to support vaccine development and access like the MARVAC consort time are critical to fighting this public health threat.

关键词： Marburg Virus Vaccines Antivirals Viruses Drug Discovery

Local Persistence of Large Benthic Foraminifera(LBF)under Increasing Urban Development:A Case Study from Zanzibar(Unguja),east Africa

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Journal of earth Science 2022年第6期33卷 1434-1450页

作者： Gita R.Narayan natalia Herrán Claire e.Reymond Yohanna W.Shaghude Hildegard Westphal Leibniz Centre for Tropical Marine Research(ZMT) BremenGermany Department of Geosciences Bremen UniversityBremenGermany Leibniz Institute for Baltic Sea Research(IOW) 18119RostockGermany School of earth Sciences China University of GeosciencesWuhan430074China School of Geosciences The University of SydneySydneyNSW2006Australia Institute of Marine Sciences(IMS) The University of Dar es SalaamZanzibarTanzania King Abdullah University of Science and Technology(KAUST) ThuwalKingdom of Saudi Arabia

Coastal marine management is vital for socio-ecological sustainability of developing,tropical ecosystems,which calls for diverse tools to monitor and assess water *** carbonatedominated habitats off Zanzibar were chosen for study due to potential water quality degradation in a rapidly developing tourist destination heavily reliant on its coral *** reefs are largely unmonitored and subject to local and global stressors.A widely used method for assessing reef health,as an early detection method of ecological changes,is the application of large benthic foraminiferal bioindicators,i.e.,the Fo RAM *** expected to find poor water quality conditions in the unmanaged reefs supported by stress-toelerant(opportunistic)foraminiferal *** dissolved inorganic nitrogen and phosphate values derived from untreated sewage effluent from Stone Town were highly variable(ranging 0.05–3.77 and 0.05–1.45μM,respectively),moderate,and occasionally approached or exceeded critical threshold values for oligotrophic *** analysis of total assemblages indicated an abundance of symbiont-bearing large benthic foraminifera,dominated by prolific Amphistegina species,comparatively low-moderate diversity,high FI values(7.6 on average),and high coral cover.A water quality gradient was reflected by subtle assemblage differences,suggesting that LBF can provide early warning signals of benthic changes,indicating the importance of long-term monitoring programs in vulnerable,rapidly developing coastal ecosystems exposed to increasing pressures.

关键词： carbonate coral reef bioindicator Fo RAM Index nutrients sewage effluent Western Indian Ocean coastal development coastal marine management

eIF3 subunit M regulates blood meal digestion in Rhodnius prolixus affecting ecdysis, reproduction, and survival

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Insect Science 2023年第5期30卷 1282-1292页

作者： Pilar Ameijeiras natalia Capriotti Sheila Ons Pedro L.Oliveira Marcos Sterkel Laboratorio de Neurobiología de Insectos(LNI) Centro Regional de Estudios GenómicosFacultad de Ciencias ExactasUniversidad Nacional de La PlataCENEXACONICETLa PlataBuenos AiresArgentina Instituto de Bioquímica Médica Leopoldo de Meis Universidade Federal do Rio de JaneiroRio de JaneiroBrazil Instituto Nacional de Ciência e Tecnologia em entomologia Molecular(INCT-eM) Rio de JaneiroBrazil

In triatomines,blood-feeding triggers many physiological processes including post embryonic development and *** feeding habits,such as hematophagy,can shape gene functions to meet the challenges of each type of *** gut of blood-sucking insects faces particular challenges after feeding due to the quantity and the quality of the food ingested.A comparison of transcriptomic and proteomic data indicates that post transcriptional regulation of gene expression is crucial in the triatomine *** was proposed that eukaryotic translation initiation factor 3 subunit m(eIF3m)and eIF3e define 2 different eIF3 complexes with a distinct affinity for the different mRNAs,thus selecting the set of mRNAs to be translated and constituting a post transcriptional mode of regulation of gene *** the eIF3m is mainly expressed in the gut,we evaluated its relevance in Rhodnius prolixus physiology through RNA interference-mediated gene *** knockdown of eIF3m reduced the digestion rate,affecting the processes triggered by a blood *** silencing inhibited molting and caused premature death in nymphs while impaired ovary development,oviposition and increased resistance to starvation in adult *** survival of males after feeding(resistance to starvation)was not affected by eIF3m *** information regarding the eIF3m function in insects is scarce and the phenotypes observed in *** upon eIF3m silencing are different and more severe than those previously described in Drosophila melanogaster,indicating a pleiotropic role of this gene in triatomines.

关键词： egg hatching hematophagous vectors lifespan oviposition post embryonic development starvation resistance

Histone Acetyltransferase AtGCN5/HAG1 Is a Versatile Regulator of Developmental and Inducible Gene expression in Arabidopsis

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Molecular Plant 2010年第4期3卷 670-677页

作者： Caroline Servet natalia Conde e Silva Dao-Xiu Zhou Institut de Biologie des Plantes Universite Paris-sud 11 91405 Orsay France

Histone acetylation/deacetylation is a dynamic process and plays an important role in gene regulation. Histone acetylation homeostasis is regulated by antagonist actions of histone acetyltransferases （HAT） and deacetylases （HDAC）. Plant genome encodes multiple HATs and HDACs. The Arabidopsis HAT gene AtGCNS/HAGlplays an essential role in many plant development processes, such as meristem function, cell differentiation, leaf and floral organogenesis, and responses to environmental conditions such as light and cold, indicating an important role of this HAT in the regulation of both long-term developmental switches and short-term inducible gene expression. AtGCN5 targets to a large number of promoters and is required for acetylation of several histone H3 lysine residues. Recruitment of AtGCN5 to target promoters is likely to be mediated by direct or indirect interaction with DNA-binding transcription factors and/or by interaction with acetylated histone lysine residues on the targets. Interplay between AtGCN5 and other HATand HDAC is demonstrated to control specific regulatory pathways. Analysis of the role of AtGCN5 in light-inducible gene expression suggests a function of AtGCN5 in preparing chromatin commitment for priming inducible gene activation in plants.

关键词： Light regulation chromatin structure and remodeling gene regulation leaf/vegetative development meristem development.

Cereal type and combined xylanase/glucanase supplementation influence the cecal microbiota composition in broilers

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Journal of Animal Science and Biotechnology 2022年第5期13卷 1531-1542页

作者： Dimitrios Kouzounis Jannigje G.Kers natalia Soares Hauke Smidt Mirjam A.Kabel Henk A.Schols Laboratory of Food Chemistry Wageningen University&Research6708 WG WageningenThe Netherlands Laboratory of Microbiology Wageningen University&Research6708 WE WageningenThe Netherlands Huvepharma NV 2600 BerchemBelgium

Dietary fiber-degrading enzyme supplementation in broilers aims at off-setting the anti-nutritive effect of non-starch polysaccharides and at promoting broiler ***,we demonstrated that xylanase/glucanase addition in wheat-based diet improved nutrient digestibility,arabinoxylan fermentability and broiler ***,maize arabinoxylan was found to be recalcitrant to xylanase *** findings suggested that enzyme-mediated improvement of nutrient digestion and carbohydrate fermentation depended on the cereal type present in the diet,and may have contributed to broiler ***,we aimed at further investigating the link between dietary enzymes and carbohydrate fermentation in broilers,by studying the impact of enzyme supplementation in cereal-based diets,to the microbial communities in the ileum and ceca of *** that purpose,96 one-day-old male broilers were randomly reared in two pens and received either wheat-based or maize-based starter and grower *** d 20,the broilers were randomly assigned to one out of four dietary *** broilers received for 8 d the wheat-based or maize-based finisher diet as such(Control treatments;WC,MC)or supplemented with a xylanase/glucanase combination(enzyme treatments;We,Me).At d 28,samples from the digestive tract were collected,and the ileal and cecal microbiota composition was determined by 16S ribosomal RNA gene amplicon sequencing.A similar phylogenetic(alpha)diversity was observed among the four treatments,both in the ileal and the cecal ***,a similar microbial composition in the ileum(beta diversity)was observed,with lactobacilli being the predominant community for all *** contrast,both cereal type and enzyme supplementation were found to influence cecal *** type of cereal(i.e.,wheat or maize)explained 47% of the total variation in microbial composition in the *** stratifying the analysis per cereal type revealed differences in microbio

关键词： Arabinoxylo-oligosaccharides Broiler gut microbiota Cereal non-starch polysaccharides Feed enzymes Fiber fermentation Prebiotics 16S rRNA

Fluid Inclusion evidences for the P-T Conditions of Quartz Veins Formation in the Black Shale-Hosted Gold Deposits, Bodaybo Ore Region, Russia

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Journal of earth Science 2020年第3期31卷 514-522页

作者： natalia N.Ankusheva ekaterina e.Palenova Svetlana N.Shanina Institute of Mineralogy South-Urals Federal Research Center of Mineralogy and GeoecologyUrals BranchRussian Academy of SciencesMiass 456317Russia Geological Department South-Urals State UniversityMiass 456300Russia Institute of Geology of the Komi Science Center Urals BranchRussian Academy of SciencesSyktyvkar 167982Russia

The P-T conditions of auriferous and barren quartz veins from Kopylovsky,Kavkaz and Krasnoye gold deposits in Proterozoic black shales of Bodaybo ore region are presented the first time in this *** inclusions trapped in auriferous quartz are aqueous Na±K-Mg chloride with salinity of 6 wt.%-8.8 wt.%*** temperatures vary from 260 to 350℃,and calculated trapping pressures are 1.2-1.6 *** fluids trapped in barren quartz have more complicated compositions with Na,K,Mg and Fe chlorides,salinity up to 13 wt.%NaCleqv,and homogenization temperatures ranging between 140 and 280℃.The volatiles in fluids are dominated by H2O,followed by CO2 with minor amounts of CH4 and *** suppose that auriferous and barren quartz veins have been formed due to the basic metamorphogenic fluid as evidenced by the close slat and gas fluid composition.

关键词： Bodaybo black shales gold deposits gold-bearing quartz barren veins fluid inclusions P-T conditions