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Identification of Key Genes as Potential Drug Targets for Gastric Cancer

清华大学学报:自然科学版(英文版) 2023年第4期28卷 649-664页

作者： md.tofazzal hossain md.Selim Reza Yin Peng Shengzhong Feng Yanjie Wei Center for High Performance Computing Joint Engineering Research Center for Health Big Data Intelligent Analysis TechnologyShenzhen Institute of Advanced TechnologyChinese Academy of SciencesShenzhen 518055China School of Computer Science and Technology University of Chinese Academy of SciencesBeijing 100049China Department of Statistics Bangabandhu Sheikh Mujibur Rahman Science and Technology UniversityGopalganj 8100Bangladesh Guangdong Provincial Key Laboratory for Genome Stability and Disease Prevention and Regional Immunity and Diseases Department of PathologyShenzhen UniversityShenzhen 518060China

Gastric cancer(GC)is one of the most common cancers and ranks the third in cancer mortality all over the *** goal of this study was to identify potential hub-genes,highlighting their functions,signaling pathways,and candidate drugs for the treatment of GC *** used publicly available next generation sequencing(NGS)data to identify differentially expressed(DE)*** top DE genes were mapped to STRING database to construct the protein-protein interaction(PPI)network and top hub genes were selected for further *** found a total of 1555 DE genes with 870 upregulated and 685 downregulated genes in *** selected the top 400(200 upregulated and 200 downregulated)genes to construct a PPI network and extracted the top 15 hub *** gene ontology(GO)term and kyoto encyclopedia of genes and genomes(KEGG)pathway enrichment analyses of the 15 hub genes exposed some important functions and signaling pathways that were significantly associated with GC *** survival analysis of the hub genes disclosed that the lower expressions of the three hub genes CDH2,COL4A1,and COL5A2 were associated with better survival of GC *** three genes might be the candidate biomarkers for the diagnosis and treatment of ***,we considered 3 key proteins(genomic biomarkers)(COL4A1,CDH2,and CO5A2)as the drug target proteins(receptors),performed their docking analysis with the 102 meta-drug agents,and found Everolimus,Docetaxel,Lanreotide,Venetoclax,Temsirolimus,and Nilotinib as the top ranked 6 candidate drugs with respect to our proposed target proteins for the treatment against GC ***,the proposed drugs might play vital role for the treatment against GC patients.

关键词： gastric cancer hub genes candidate genes molecular docking candidate drugs

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Genome-Wide Analysis for Yield-Related Agronomic and Biochemical Traits of Chinese and Bangladeshi Grass Pea Genotypes Using SSR Markers

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Phyton-International Journal of Experimental Botany 2024年第8期93卷 1781-1804页

作者： md.Mosiur Rahman md.Ruhul Quddus Quanle Xu Muhammad Malek hossain Rong Liu Mengwei Li Xin Yan Guan Li Yishan Ji Chenyu Wang Ashutosh Sarker Tao Yang Xuxiao Zong md.Monoar hossain Saleh Alfarraj Mohammad Javed Ansari Sagar Maitra Akbar hossain Institute of Crop Sciences Chinese Academy of Agricultural Sciences(CAAS)Beijing100081China Pulses Research Center Bangladesh Agricultural Research Institute(BARI)Gazipur1701Bangladesh Hybrid Rice Division Bangladesh Rice Research Institute(BRRI)Gazipur1701Bangladesh Northwest Agriculture&Forestry University Yangling712199China International Center for Agricultural Research in the Dry Areas(ICARDA) New Delhi110012India Wheat Breeding Division Bangladesh Wheat and Maize Research InstituteDinajpur5200Bangladesh Zoology Department College of ScienceKing Saud UniversityRiyadh11451Saudi Arabia Department of Botany Hindu College Moradabad(Mahatma Jyotiba Phule Rohilkhand UniversityBareilly)Moradabad244001India Department of Agronomy and Agroforestry Centurion University of Technology and ManagementOdisha761211India Soil Science Division Bangladesh Wheat and Maize Research InstituteDinajpur5200Bangladesh

Grass pea(Lathyrus sativus L.)is an imperative food crop cultured in dryland agricultural *** is a vital source of dietary protein to millions of populaces living in low-income countries in South-East Asia and *** study highlights the improvement of genomic properties and their application in marker-trait relationships for 17 yield-related characters in 400 grass pea genotypes from China and *** characters were assessed via 56 polymorphic markers using general linear model(GLM)(P+G+Q)and mixed linear model(MLM)(P+G+Q+K)in the tassel software based on the linkage disequilibrium and population structure *** structure analysis showed two major groups and one admixed group in the *** significant loci pairs of linkage disequilibrium(LD)mean value(D′)was 0.479.A total of 99 and 61 marker-trait associations in GLM and MLM models allied to the 17 traits were accepted at a 5%level of *** these markers,21 markers were associated with more than one trait;12 marker-trait associations passed the Bonferroni correction *** models found six markers C41936,C39067,C34100,C47146,C47638,and C43047 significantly associated with days to maturity,flower color,plant height,and seed per pod were detected in the Hebei and Liaoyang location(p≤0.01),and the interpretation rate(R^(2)value)11.2%to 43.6%.Conferring to the consequences,the association analysis methodology may operative system for quantitative,qualitative,and biochemical traits related to gene position mapping and support breeders in improving novel approaches for advancing the grass pea quality.

关键词： Grass pea dryland agriculture genome-wide association yield contributing traits SSR markers

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An Enhanced Hybrid Model Based on CNN and BiLSTM for Identifying Individuals via Handwriting Analysis

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Computer Modeling in Engineering & Sciences 2024年第8期140卷 1689-1710页

作者： md.Abdur Rahim Fahmid Al Farid Abu Saleh Musa Miah Arpa Kar Puza md.Nur Alam md.Najmul hossain Sarina Mansor Hezerul Abdul Karim Department of Computer Science and Engineering Pabna University of Science and TechnologyPabna6600Bangladesh Faculty of Engineering Multimedia UniversityCyberjaya63100Malaysia Department of Computer Science and Engineering Bangladesh Army University of Science and TechnologySaidpur5311Bangladesh Department of Mathematics Pabna University of Science and TechnologyPabna6600Bangladesh Department of Electrical Electronic and Communication EngineeringPabnaUniversity of Science and TechnologyPabna6600Bangladesh Department of Electrical and Communication Engineering Pabna University of Science and TechnologyPabna6600Bangladesh

Handwriting is a unique and significant human feature that distinguishes them from one *** are many researchers have endeavored to develop writing recognition systems utilizing specific signatures or symbols for person identification through ***,such systems are susceptible to forgery,posing security *** response to these challenges,we propose an innovative hybrid technique for individual identification based on independent handwriting,eliminating the reliance on specific signatures or *** response to these challenges,we propose an innovative hybrid technique for individual identification based on independent handwriting,eliminating the reliance on specific signatures or *** innovative method is intricately designed,encompassing five distinct phases:data collection,preprocessing,feature extraction,significant feature selection,and *** key advancement lies in the creation of a novel dataset specifically tailored for Bengali handwriting(BHW),setting the foundation for our comprehensive ***-preprocessing,we embarked on an exhaustive feature extraction process,encompassing integration with kinematic,statistical,spatial,and composite *** meticulous amalgamation resulted in a robust set of 91 *** enhance the efficiency of our system,we employed an analysis of variance(ANOVA)F test and mutual information scores approach,meticulously selecting the most pertinent *** the identification phase,we harnessed the power of cutting-edge deep learning models,notably the Convolutional Neural Network(CNN)and Bidirectional Long Short-Term Memory(BiLSTM).These models underwent rigorous training and testing to accurately discern individuals based on their handwriting ***,our methodology introduces a groundbreaking hybrid model that synergizes CNN and BiLSTM,capitalizing on fine motor features for enhanced individual ***,our experimental results unde

关键词： Bengali handwriting(BHW) person identification convolutional neural network(CNN) BiLSTM

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Upgrade from aerated static pile to agitated bed systems promotes lignocellulose degradation in large-scale composting through enhanced microbial functional diversity

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Journal of Environmental Sciences 2024年第10期144卷 55-66页

作者： Hanxia Yu Haoyan Xiao Huiyu Deng Adam Frew md.Akhter hossain Wenbing Tan Beidou Xi School of Geographical Sciences Fujian Normal UniversityFuzhou 350007China Hawkesbury Institute for the Environment Western Sydney UniversityLocked Bag 1797PenrithNSW 2751Australia State Key Laboratory of Environmental Criteria and Risk Assessment Chinese Research Academy of Environmental SciencesBeijing 100012China

Composting presents a viable management solution for lignocellulose-rich municipal solid ***,our understanding about the microbial metabolic mechanisms involved in the biodegradation of lignocellulose,particularly in industrial-scale composting plants,remains *** study employed metaproteomics to compare the impact of upgrading from aerated static pile(ASP)to agitated bed(AB)systems on physicochemical parameters,lignocellulose biodegradation,and microbial metabolic pathways during largescale biowaste composting process,marking the first investigation of its *** degradation rates of lignocellulose including cellulose,hemicellulose,and lignin were significantly higher in AB(8.21%-32.54%,10.21%-39.41%,and 6.21%-26.78%)than those(5.72%-23.15%,7.01%-33.26%,and 4.79%-19.76%)in ASP at three thermal stages,*** AB system in comparison to ASP increased the carbohydrate-active enzymes(CAZymes)abundance and production of the three essential enzymes required for lignocellulose decomposition involving a mixture of bacteria and fungi(i.e.,Actinobacteria,Bacilli,Sordariomycetes and Eurotiomycetes).Conversely,ASP primarily produced exoglucanase andβ-glucosidase via fungi(i.e.,Ascomycota).Moreover,AB effectively mitigated microbial stress caused by acetic acid accumulation by regulating the key enzymes involved in acetate conversion,including acetyl-coenzyme A synthetase and acetate ***,the AB upgraded from ASP facilitated the lignocellulose degradation and fostered more diverse functional microbial communities in large-scale *** findings offer a valuable scientific basis to guide the engineering feasibility and environmental sustainability for large-scale industrial composting plants for treating lignocellulose-rich *** findings have important implications for establishing green sustainable development models(e.g.,a circular economy based onmaterial recovery)and for achieving sustainable development goals.

关键词： Bacterial and fungal community Large-scale composting Lignocellulose degradation Microbial metabolism Metaproteomic analysis

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Multi-species probiotics enhance survival,growth,intestinal microbiota and disease resistance of rohu(Labeo rohita)larvae

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Water Biology and Security 2024年第1期3卷 71-79页

作者： Zannatul Ferdous md Kabir hossain md Hadiuzzaman SMRafiquzzaman KM Abdul Halim Tanvir Rahman md Ali Reza Faruk Zulhisyam Abdul Kari md Shahjahan Laboratory of Fish Ecophysiology Department of Fisheries ManagementBangladesh Agricultural UniversityMymensingh2202Bangladesh Department of Aquaculture Bangladesh Agricultural UniversityMymensingh2202Bangladesh Department of Fisheries Matshoy BhabanDhakaBangladesh Department of Fisheries Biology&Aquatic Environment Bangabandhu Sheikh Mujibur Rahman Agricultural UniversityGazipur1706Bangladesh Department of Agricultural Sciences Faculty of Agro-Based IndustryUniversiti Malaysia KelantanJeli Campus17600JeliKelantanMalaysia

Multi-strain probiotics provide the most dependable approaches to improve health,immune response,and disease resistance in farmed *** the present study,we examined the effects of multi-species probiotics on the survival,growth,immune response,and disease resistance of rohu(Labeo rohita)*** hatched larvae from the day of first feeding(average weight of 0.003 g)were reared with multi-species probiotics having a combination of Bacillus subtilis(109 colony forming units(cfu)/mL)and Lactobacillus spp.(Lactobacillus plantarum,Lactobacillus buchneri-1011 cfu/mL)in water containing doses of 0(control-C),0.5 mL/L(treatment 1-T1),and 1.0 mL/L(treatment 2-T2)in triplicates for 90 *** the experiment,a challenge test was performed to assess the fish's resistance to pathogenic Aeromonas *** higher survival was recorded in larvae of treated groups(87%in T2 and 79%in T1)compared to the control(62%).Significantly higher growth performance(weight gain and specific growth rate—SGR)was shown by the probiotic-treated larval groups compared to the *** supplementation resulted in significantly higher counts of total viable colony(TVC)and lactic acid bacteria(LAB)in the *** immunological parameters(mucosal fold fattening,goblet cell abundance,expansion of lamina propria and enterocytes)of the gut were significantly better in probiotic-treated *** liver of treated fish showed irregular shape nuclei turning into regular shape and reducing spaces between the hepatic ***-treated fish had the highest post-challenge survival rate(90%)against *** *** erythrocytes of challenged fish treated with probiotics had significantly lower frequencies of various nuclear and cellular *** findings suggest that multi-species probiotic supplements could improve the survival,growth,health status,and immune response of rohu in the early stages of its development.

关键词： Aquaculture Disease resistance Immunity Labeo rohita Probiotics

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Superconducting joints using reacted multifilament MgB_(2)wires:A technology toward cryogen-free MRI magnets

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Journal of Magnesium and Alloys 2024年第1期12卷 159-170页

作者： Dipak Patel Akiyoshi Matsumoto Hiroaki Kumakura Yuka Hara Toru Hara Minoru Maeda Hao Liang Yusuke Yamauchi Seyong Choi Jung Ho Kim md Shahriar A.hossain School of Mechanical and Mining Engineering The University of QueenslandSt LuciaQueensland 4072Australia National Institute for Materials Science(NIMS) 1-2-1 SengenTsukubaIbaraki 305-0047Japan Department of Electrical Engineering and Kangwon High Magnetic Field Center Institute of Quantum Convergence TechnologyKangwon National UniversityGangwon 24341Republic of Korea Australian Institute for Bioengineering and Nanotechnology(AIBN) The University of QueenslandSt LuciaQueensland 4072Australia Department of Materials Process Engineering Graduate School of EngineeringNagoya UniversityNagoyaAichi 464-8603Japan Institute for Superconducting and Electronic Materials Australian Institute for Innovative MaterialsUniversity of WollongongNorth WollongongNew South Wales 2500Australia

The development of superconducting joining technology for reacted magnesium diboride(MgB_(2))conductors remains a critical challenge for the advancement of cryogen-free MgB_(2)-based magnets for magnetic resonance imaging(MRI).Herein,the fabrication of superconducting joints using reacted carbon-doped multifilament MgB_(2)wires for MRI magnets is *** achieve successful superconducting joints,the powder-in-mold method was employed,which involved tuning the filament protection mechanism,the powder compaction pressure,and the heat treatment *** fabricated joints demonstrated clear superconducting-to-normal transitions in self-field,with effective magnetic field screening up to 0.5 T at 20 *** evaluate the interface between one of the MgB_(2)filaments and the MgB_(2)bulk within the joint,serial sectioning was conducted for the first time in this type of superconducting *** serial sectioning revealed space formation at the interface,potentially caused by the volume shrinkage associated with the MgB_(2)formation or the combined effect of the volume shrinkage and the different thermal expansion coefficients of the MgB_(2)bulk,the filament,the mold,and the sealing *** findings are expected to be pivotal in developing MgB_(2)superconducting joining technology for MRI magnet applications through interface engineering.

关键词： Mg B2 superconducting joint MgB_(2)conductor MRI applications Cryogen-free magnet Persistent-mode operation

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Growth performance,fatty acid profile,gut,and muscle histo-morphology of Malaysian mahseer,Tor tambroides post larvae fed short-term host associated probiotics

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Aquaculture and Fisheries 2024年第1期9卷 35-45页

作者： Mohammod Kamruzzaman hossain Sairatul Dahlianis Ishak Shumpei Iehata Mat Noordin Noordiyana md Abdul Kader Ambok Bolong Abol-Munafi Department of Fisheries(DoF) Matshya BhabonRamnaDhaka1000Bangladesh Higher Institution Centre of Excellence(HICoE) Institute of Tropical Aquaculture and Fisheries(AKUATROP)Universiti Malaysia TerengganuKuala Nerus21030Malaysia Faculty of Fisheries and Food Sciences Universiti Malaysia TerengganuKuala Nerus21030Malaysia Alternative Aquatech Victoria3029Australia

Host associated probiotics(HAPs)provide health benefits to the host when administered as dietary ***,a short-term probiotics application strategy has yet to be optimized.A 90-days study was conducted to evaluate the response of Malaysian mahseer,Tor tambroides post larvae fed with basal diet enriched HAPs for 30-days,and its response following another 60-days feeding with only basal *** experimental diets(Enterococcus faecalis strain 2674(T1),Aeromonas *** A8-29(T2)and *** strain FC11682(T3))were prepared by spray-coating each HAPs on a basal diet at 1×108 CFU/g *** in growth performances,whole-body proximate and fatty acid composition,muscle morphometry,and gut morphology were *** showed that after 30 days,T3 fish produced highest *** HAP treatment groups showed better muscle distribution profile,improved fatty acid composition,and higher villus length,width and area,than control *** 90 days,the growth of T3 fish was still the *** distribution profile and villus growth were higher in HAP treatments,although only total n-6 PUFA,total MUFA,linoleic acids,and linolenic acids in HAP treated fish remained high after probiotics *** difference in whole-body proximate composition was observed in both 30 and 90 *** findings demonstrated that short-term application of HAPs at an early stage could be used to boost *** growth,with *** strain FC11682 showing the best efficacy.

关键词： Enhance culture Enterococcus faecalis Aeromonas sp. Muscle hypertrophy Short-term feeding Tor tambroides

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Advances in DNA methylation and its role in cytoplasmic male sterility in higher plants

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Journal of Integrative Agriculture 2024年第1期23卷 1-19页

作者： Atiqur Rahman Hasan Sofiur Rahman Shakil Uddin Naima Sultana Shirin Akhter Ujjal Kumar Nath Shamsun Nahar Begum Mazadul Islam Afroz Naznin Nurul Amin Sharif Ahmed Akbar hossain Department of Genetics and Plant Breeding Bangladesh Agricultural UniversityMymensingh 2202Bangladesh Plant Breeding Division Bangladesh Institute of Nuclear AgricultureMymensingh 2202Bangladesh Tuber Crop Research Centre Bangladesh Agricultural Research Institute(BARI)Joydebpur 1701Bangladesh Horticulture Research Centre Bangladesh Agricultural Research Institute(BARI)Joydebpur 1701Bangladesh Biotechnology Division Bangladesh Agricultural Research Institute(BARI)Joydebpur 1701Bangladesh International Rice Research Institute Bangladesh OfficeDhaka 1213Bangladesh Division of Soil Science Bangladesh Wheat and Maize Research InstituteDinajpur 5200Bangladesh

The impact of epigenetic modifications like DNA methylation on plant phenotypes has expanded the possibilities for crop *** methylation plays a part in the regulation of both the chromatin structure and gene expression,and the enzyme involved,DNA methyltransferase,executes the methylation process within the plant *** regulating crucial biological pathways,epigenetic changes actively contribute to the creation of the ***,epigenome editing may assist in overcoming some of the drawbacks of genome editing,which can have minor off-target consequences and merely facilitate the loss of a gene’s *** drawbacks include gene knockout,which can have such off-target *** review provides examples of several molecular characteristics of DNA methylation,as well as some plant physiological processes that are impacted by these epigenetic changes in the *** also discuss how DNA alterations might be used to improve crops and meet the demands of sustainable and environmentally-friendly farming.

关键词： DNA methylation epigenetics CMS male sterility chromatin architecture gene expression higher plants

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Robustness Study and Superior Method Development and Validation for Analytical Assay Method of Atropine Sulfate in Pharmaceutical Ophthalmic Solution

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American Journal of Analytical Chemistry 2024年第5期15卷 151-164页

作者： md. Nazmus Sakib Chowdhury Sreekanta Nath Dalal md. Ariful Islam md. Anwar hossain Pranab Kumar Das Shakawat hossain Parajit Das Department of Pharmacy Bangabandhu Sheikh Mujibur Rahman Science and Technology University Gopalganj Bangladesh Department of Applied Chemistry and Chemical Engineering University of Dhaka Dhaka Bangladesh Department of Applied Chemistry and Chemical Engineering University of Chittagong Chattogram Bangladesh Department of Applied Chemistry and Chemical Engineering Islamic University Kushtia Bangladesh Department of Applied Chemistry and Chemical Engineering University of Rajshahi Rajshahi Bangladesh Department of Pharmacy International Islamic University Chittagong Chittagong Bangladesh Department of Applied Chemistry and Chemical Engineering Bangabandhu Sheikh Mujibur Rahman Science and Technology University Gopalganj Bangladesh

Background: The robustness is a measurement of an analytical chemical method and its ability to contain unaffected by little with deliberate variation of analytical chemical method parameters. The analytical chemical method variation parameters are based on pH variability of buffer solution of mobile phase, organic ratio composition changes, stationary phase (column) manufacture, brand name and lot number variation;flow rate variation and temperature variation of chromatographic system. The analytical chemical method for assay of Atropine Sulfate conducted for robustness evaluation. The typical variation considered for mobile phase organic ratio change, change of pH, change of temperature, change of flow rate, change of column etc. Purpose: The aim of this study is to develop a cost effective, short run time and robust analytical chemical method for the assay quantification of Atropine in Pharmaceutical Ophthalmic Solution. This will help to make analytical decisions quickly for research and development scientists as well as will help with quality control product release for patient consumption. This analytical method will help to meet the market demand through quick quality control test of Atropine Ophthalmic Solution and it is very easy for maintaining (GDP) good documentation practices within the shortest period of time. Method: HPLC method has been selected for developing superior method to Compendial method. Both the compendial HPLC method and developed HPLC method was run into the same HPLC system to prove the superiority of developed method. Sensitivity, precision, reproducibility, accuracy parameters were considered for superiority of method. Mobile phase ratio change, pH of buffer solution, change of stationary phase temperature, change of flow rate and change of column were taken into consideration for robustness study of the developed method. Results: The limit of quantitation (LOQ) of developed method was much low than the compendial method. The % RSD fo

关键词： Robustness Method Validation HPLC Compendial Method Method Development GDP LOQ

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The Influence of Rice Husk Ash on Mechanical Properties of the Mortar and Concrete: A Critical Review

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Open Journal of Civil Engineering 2024年第1期14卷 65-81页

作者： md Jahangir Alam Mithun Biswas Mohammad Biplab Mia Shahin Alam md Mosabber hossain College of Civil and Transportation Engineering Hohai University Nanjing China School of Civil Engineering Chang’an University Xi’an China

Increasing the population and infrastructure in both emerging and developed countries requires a considerable amount of cement, which significantly affects the environment. The primary materials of concrete (‘cement’) production emit a large quantity of CO2 into the environment. Also, the cost of conventional building materials like cement gives motivation to find geopolymer waste materials for concrete. To reduce harmful effects on the environment and cost of traditional concrete substance, alternative waste materials like rice husk ash (RHA), ground granulated blast-furnace (GGBS), fly ash (FA), and metakaolin (MK) can be used due to their pozzolanic behavior. RHA waste material with a high silica concentration obtained from burning rice husks can possibly be used as a supplementary cementitious material (SCM) in the manufacturing of concrete, and its strong pozzolanic properties can contribute to the strength and impermeability of concrete. This review paper highlights a summary of the positive effect of using RHA as a partial substitute for cement in building construction, as well as its optimal inclusion of enhanced mechanical properties like compressive strength, flexural strength, and split tensile strength of mortar and concrete.

关键词： Cement Rice Husk Ash RHA Properties Mechanical Properties Carbon Di-oxide Emission and Greenhouse Gas

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