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Advances in DNA methylation and its role in cytoplasmic male sterility in higher plants

Journal of Integrative Agriculture 2024年第1期23卷 1-19页

作者： Atiqur Rahman Hasan Sofiur Rahman Shakil Uddin Naima Sultana Shirin Akhter Ujjal Kumar Nath Shamsun Nahar Begum mazadul islam Afroz Naznin Nurul Amin Sharif Ahmed Akbar Hossain Department of Genetics and Plant Breeding Bangladesh Agricultural UniversityMymensingh 2202Bangladesh Plant Breeding Division Bangladesh Institute of Nuclear AgricultureMymensingh 2202Bangladesh Tuber Crop Research Centre Bangladesh Agricultural Research Institute(BARI)Joydebpur 1701Bangladesh Horticulture Research Centre Bangladesh Agricultural Research Institute(BARI)Joydebpur 1701Bangladesh Biotechnology Division Bangladesh Agricultural Research Institute(BARI)Joydebpur 1701Bangladesh International Rice Research Institute Bangladesh OfficeDhaka 1213Bangladesh Division of Soil Science Bangladesh Wheat and Maize Research InstituteDinajpur 5200Bangladesh

The impact of epigenetic modifications like DNA methylation on plant phenotypes has expanded the possibilities for crop *** methylation plays a part in the regulation of both the chromatin structure and gene expression,and the enzyme involved,DNA methyltransferase,executes the methylation process within the plant *** regulating crucial biological pathways,epigenetic changes actively contribute to the creation of the ***,epigenome editing may assist in overcoming some of the drawbacks of genome editing,which can have minor off-target consequences and merely facilitate the loss of a gene’s *** drawbacks include gene knockout,which can have such off-target *** review provides examples of several molecular characteristics of DNA methylation,as well as some plant physiological processes that are impacted by these epigenetic changes in the *** also discuss how DNA alterations might be used to improve crops and meet the demands of sustainable and environmentally-friendly farming.

关键词： DNA methylation epigenetics CMS male sterility chromatin architecture gene expression higher plants

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Reservoir quality of the Late Cretaceous Volador Formation of the Latrobe group,Gippsland Basin,Australia:Implications from integrated analytical techniques

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Energy Geoscience 2024年第1期5卷 121-140页

作者： Kamalia Norjannah Kamalrulzaman Mohamed Ragab Shalaby Md Aminul islam Department of Geosciences Faculty of ScienceUniversiti Brunei DarussalamBrunei Darussalam Geology Department Faculty of ScienceTanta UniversityTanta31527Egypt

Increasing demand for energy due to the populous Eastern Australia has driven oil and gas industries to find new sources of hydrocarbons as they are the primary energy *** study has been done on the Volador Formation in the Gippsland Basin by means of core-based petrophysical,sedimentological,and petrographic analyses as well as well log-based interpretation and capillary pressure *** wells from Kipper,Basker and Tuna fields with available dataset were investigated in this study:Kipper-1,Basker-1,Basker-2,Basker-5 and ***,the formation has good reservoir quality based on the high porosity and permeability values obtained through core and well log petrophysical *** formation made up of mostly moderate to coarse quartz grains that has experienced strong anti-compaction and is poorly *** and illite clays are seen dispersed in the rock formation,with the minority being mixed *** clays and diagenetic features including kaolinite cement and quartz overgrowth that can lead to porosity reduction only have insignificant impact on the overall reservoir *** addition,capillary pressure data shows that most samples are found in the transition to good reservoir zones(<50%saturation).The results obtained from this study have shown that the Volador Formation in the Gippsland Basin is worth for hydrocarbon exploration.

关键词： Volador formation Reservoir rock characterization Core-based Petrographic Well log based Capillary pressure

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Review of coastal land transformation:Factors,impacts,adaptation strategies,and future scopes

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Geography and Sustainability 2024年第2期5卷 167-178页

作者： Md.Abubakkor Siddik Abu Reza Md.Towfiqul islam Dr.Wazed Research and Training Institute Begum Rokeya UniversityRangpur 5404Bangladesh Department of Emergency Management Patuakhali Science and Technology UniversityPatuakhali-8602Bangladesh Department of Disaster Management Begum Rokeya UniversityRangpur 5404Bangladesh Department of Development Studies Daffodil International UniversityDhaka 1216Bangladesh

Coastal land transformation has been identified as a topic of research in many countries around the *** studies have been conducted to determine the causes and impacts of land ***,much less is understood about coupling change detection,factors,impacts,and adaptation strategies for coastal land transformation at a global *** review aims to present a systematic review of global coastal land transformation and its leading research *** 1,741 documents of Scopus and Web of Science,60 studies have been selected using the PRISMA-2020 *** revealed that existing literature included four leading focus areas regarding coastal land transformation:change detection,driving factors,impacts,and adaptation *** focus areas were further analyzed,and it was found that more than 80%of studies used Landsat imagery to detect land *** growth and urbanization were among the major driving factors *** review further identified that about 37%of studies included impact *** studies identified impacts on ecosystems,land surface temperature,migration,water quality,and occupational effects as significant ***,only four studies included adaptation *** review explored the scope of comprehensive research in coastal land transformation,addressing change detection,factor and impact analysis,and mitigation-adaptation *** research also proposes a conceptual framework for comprehensive coastal land transformation *** framework can provide potential decision-making guidance for future studies in coastal land transformation.

关键词： Coastal land transformation Land use and land cover Landsat Population PRISMA

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Glucagon-like-peptide-1 receptor agonists and the management of type 2 diabetes-backwards and forwards

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World Journal of Diabetes 2024年第3期15卷 326-330页

作者： Michael Horowitz Lu Cai Md Shahidul islam Department of Medicine University of AdelaideAdelaide 5005Australia Pediatric Research Institute University of LouisvilleLouisvilleKY 40202United States Department of Biochemistry School of Life SciencesUniversity of KwaZulu-NatalDurban 4000KwaZulu-NatalSouth Africa

This editorial is stimulated by the article by Alqifari et al published in the World Journal of Diabetes(2024).Alqifari et al focus on practical advice for the clinical use of glucagon-like-peptide-1(GLP-1)receptor agonists(GLP-1RAs)in the management of type 2 diabetes and this editorial provides complementary *** initially give a brief historical perspective of the development of GLP-1RAs stimulated by recognition of the‘incretin effect’,the substantially greater insulin increase to enteral when compared to euglycaemic intravenous glucose,and the identification of the incretin hormones,GIP and *** addition to stimulating insulin,GLP-1 reduces postprandial glucose levels by slowing gastric ***-1RAs were developed because native GLP-1 has a very short plasma *** majority of current GLP-1RAs are administered by subcutaneous injection once a *** are potent in glucose lowering without leading to hypoglycaemia,stimulate weight loss in obese individuals and lead to cardiovascular and renal *** landscape in relation to GLP-1RAs is broadening rapidly,with different formulations and their combination with other peptides to facilitate both glucose lowering and weight *** is a need for more information relating to the effects of GLP-1RAs to induce gastrointestinal symptoms and slow gastric emptying which is likely to allow their use to become more effective and personalised.

关键词： Glucagon-like-peptide-1 Glucose-dependent insulinotropic peptide Gastric emptying Type 2 diabetes

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The Outbreeding Enhancement and Correlation Studies in F<sub>1</sub>Hybrids of Hexaploid Wheat (<i>Triticum aestivum</i>L.) Cultivars

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Agricultural Sciences 2021年第8期12卷 805-826页

作者： Sujon Kumar Abul Bashar Mohammad Khaldun Mohammad Mosiur Rahman Mohammad mazadul islam Mohammad Shalim Uddin Mohammad Abdul Latif Akanda Triticeae Research Institute Sichuan Agricultural University Chengdu China Department of Biotechnology and Genetic Engineering University of Development Alternative Dhaka Bangladesh College of Agricultural Sciences International University of Business Agriculture and Technology Dhaka Bangladesh Oilseed Research Centre Bangladesh Agricultural Research Institute Gazipur Bangladesh Pulses Research Centre Bangladesh Agricultural Research Institute Gazipur Bangladesh Tuber Crops Research Centre Bangladesh Agricultural Research Institute Gazipur Bangladesh

The current study was conducted in the experimental field of the Department of Biotechnology and Genetic Engineering, Faculty of Life Science, University of Development Alternative, Dhaka, Bangladesh during the winter season 2017-2018. The study was performed to reduce the heterotic effect and phenotypic correlation among numerous yield characters for F1 hybrids of hexaploid wheat (Triticum aestivum L.). The experimental design has consisted of six parental variants (Sonalika, Balaka, Prodip, Kanchan, Agrahani and Protiva), which were crossed and nine possible cross combinations (F1 hybrids) (Prodip × Agrahani, Balaka × Agrahani, Prodip × Protiva, Protiva × Agrahani, Agrahani × Kanchan, Kanchan × Sonalika, Protiva × Prodip, Sonalika × Agrahani, and Prodip × Kanchan) were obtained. The experimental fields were selected and arranged in a randomized complete block design with four replicates, where eight characters were studied. The mean square of the analysis of variance showed that the hybrids differed significantly (p ≤ 0.01) for all studied characters except for maturity to 75% of days and height of the plant, while the parents only had no differences in grain yield. The mean square of the parent and the F1 hybrid indicated that considerable heterosis existed in the F1 hybrids. In general, correlation coefficients indicated that the maturity to 75% of days was significant but negatively correlated with most of the yield traits, suggesting that the genotypes which became mature early may have lower yields. Plant height was also negatively correlated with grain spike−1, seed index, and harvest index. The grain yield plant−1 was significant and positively correlated with all yield traits. Correlation indicates that single or multiple production-related ingredients can be used as selection time to selec

关键词： Wheat Heterosis Correlation Genotypes Yield

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Effect of organic mineral supplementation in reducing oxidative stress in Holstein calves during short‑term heat stress and recovery conditions

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Journal of Animal Science and Biotechnology 2024年第2期15卷 812-825页

作者： A-Rang Son Seon-Ho Kim Mahfuzul islam Michelle Miguel Ye Pyae Naing Sang-Suk Lee Ruminant Nutrition and Anaerobe Laboratory Department of Animal Science and TechnologySunchon National UniversitySuncheon 57922Korea Department of Microbiology and Parasitology Sher-e-Bangla Agricultural UniversityDhaka 1207Bangladesh

Background This study investigated the effects of inorganic and organic minerals on physiological responses,oxidative stress reduction,and rumen microbiota in Holstein bull calves(123.81±9.76 kg;5 months old)during short-term heat stress(HS)and recovery *** Holstein calves were randomly assigned to four treatment groups:no mineral supplementation(Con),inorganic minerals(IM),organic minerals(OM),and high-concentration organic minerals(HOM)and two thermal environments(HS and recovery)using 4×2 factorial arrangement in a crossover design of four periods of 35 *** were maintained in a temperature-controlled *** experimental period consisted of 14 d of HS,14 d of recovery condititon,and a 7-d washing *** Body temperature and respiration rate were higher in HS than in the recovery conditions(P0.05).The principal coordinate analysis represented that the overall rumen microbiota was not influenced by mineral supplementation;however,temperature-induced microbial structure shifts were indicated(PERMANOVA:P<0.05).At the phylum level,Firmicutes and Actinobacteria decreased,whereas Fibrobacteres,Spirochaetes,and Tenericutes increased(P<0.05),under HS *** genus Treponema increased under HS conditions,while Christensenella was higher in recovery conditions(P<0.05).Conc

关键词： Antioxidant status Heat stress Holstein bull calves Organic mineral supplementation Oxidative stress

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Seasonal influence of freshwater discharge on spatio-temporal variations in primary productivity, sea surface temperature, and euphotic zone depth in the northern Bay of Bengal

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Acta Oceanologica Sinica 2024年第6期43卷 1-14页

作者： Hafez Ahmad Felix Jose Md.Simul Bhuyan Md.Nazrul islam Padmanava Dash Geosystems Research Institute/Department of Geosciences Mississippi State UniversityStarkville 39759USA Department of Oceanography University of ChittagongChittagong 4331Bangladesh Department of Marine&Earth Sciences Florida Gulf Coast UniversityFort Myers 33965USA Bangladesh Oceanographic Research Institute Cox’s Bazar 4730Bangladesh Faculty of Marine Sciences&Fisheries Institute of Marine SciencesUniversity of ChittagongChittagong 4331Bangladesh Department of Geography and Environment Jahangirnagar UniversityDhaka 1342Bangladesh Department of Geosciences Mississippi State UniversityStarkville 39759USA

Ocean productivity is the foundation of marine food web,which continuously removes atmospheric carbon dioxide and supports life at sea and on ***-temporal variability of net primary productivity(NPP),sea surface temperature(SST),sea surface salinity(SSS),mixed layer depth(MLD),and euphotic zone depth(EZD) in the northern B ay of Bengal(BoB) during three monsoon seasons were examined in this study based on remote sensing data for the period 2005 to *** compare the NPP distribution between the coastal zones and open BoB,the study area was divided into five zones(Z1-Z5).Results suggest that most productive zones Z2 and Zl are located at the head bay area and are directly influenced by freshwater discharge together with riverine sediment and nutrient *** Z1-Z5,the NPP ranges from 5 315.38 mg/(m~2·d) to 346.7 mg/(m~2·d)(carbon,since then the same).The highest monthly average NPP of 5 315.38 mg/(m~2·d) in February and 5 039.36 mg/(m~2·d) in June were observed from Z2,while the lowest monthly average of 346.72 mg/(m~2·d) was observed in March from Z4,which is an oceanic *** values vary from 6-154 m for the study area,and it has an inverse correlation with NPP *** is deeper during the summer season and shallower during the wintertime,with a corresponding increase in *** the year,monthly SST shows slight fluctuation for the entire study area,and statistical analysis shows a significant correlation among NPP,and EZD,overall positive between NPP and MLD,whereas no significant correlation among SSS,and SST for the northern ***-term trends in SST and productivity were significantly po sitive in head bay zones but negatively productive in the open *** findings in this study on the distribution of NPP,SST,SSS,MLD,and EZD and their seasonal variability in five different zones of BoB can be used to further improve the management of marine resources and overall environmental condition in response to climate change

关键词： chlorophyll a sea surface temperature euphotic zone depth primary productivity Ganges-Brahmaputra ocean color Bay of Bengal monsoon

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3D reservoir characterization of the Mangahewa Formation,Mangahewa Field,Taranaki Basin,New Zealand

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Energy Geoscience 2024年第2期5卷 152-170页

作者： Dk Nurulnazihah Pg Norsahminan Md Aminul islam Surya Tejasvi Thota Mohamed Ragab Shalaby Department of Geosciences Faculty of ScienceUniversiti Brunei DarussalamJalan Tungku LinkGadong BE1410Brunei Darussalam

The Mangahewa Formation is the primary reservoir target in the Mangahewa Field in the Taranaki Basin,New *** formation is distinguished by its marginal marine substantial tight-sand reservoir,having thickness exceeding 800 *** aim of this study is to assess the reservoir properties of the Mangahewa Formation through 3D reservoir modeling,employing 3D seismic data,core data,and well data from the Mangahewa *** variance attributes,the faults and horizons have been identified successfully within the *** majority of the interpreted faults exhibit dip angles exceeding 60,with a maximum displacement of 118 *** detect direct hydrocarbon indicators,root-mean-square amplitude seismic attribute,envelope,and generalized spectral decomposition techniques have been ***,four lithofacies,comprising 78.3%sandstone,9.2%siltstone,9.5%claystone,and 3.0%coal have been established by utilizing the Sequential Indicator Simulation(SIS)algorithm to create a lithofacies model.A property model has been generated using the Sequential Gaussian Simulation(SGS)*** evaluation indicates that the Mangahewa Formation exhibits reservoir qualities ranging from fair to good,with porosity levels between 8%and 11%,permeability averaging up to 10 mD,variable shale volumes,and hydrocarbon saturation in the range of 40%e50%.This study's methodologies and findings can serve as a valuable foundation for similar investigations in other tightsand gas fields located in different regions.

关键词： Marginal marine Tight-sand reservoir Mangahewa formation Mangahewa gas-condensate field Northern taranaki basin

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Insight into Metabolomic Profiling of Tinospora cordifolia: Recent Advances and Future Perspectives of Quality Control

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World Journal of Traditional Chinese Medicine 2024年第2期10卷 137-148页

作者： Atiqul islam C.Anurag Nazia Siddiqui Xianting Ding Alok Sharma College of Pharmacy JSS Academy of Technical EducationNoidaUttar PradeshIndia Department of Pharmaceutical Technology MIETMeerutUttar PradeshIndia Institute for Personalized Medicine School of Biomedical EngineeringShanghai Jiao Tong UniversityShanghaiChina

The objective of this study was to offer a review of previous works on Tinospora cordifolia(TC) metabolomics with a highlight on the use of metabolomics in comparative evaluations between varieties and selection of optimum cultivation, collection, and extraction procedures, providing insights into pharmaceutical and food product quality monitoring. Scholarly databases were searched to gather relevant information on TC's therapeutic usefulness, phytoconstituent studies, metabolomics, and applications. Pub Chem was used to learn the structures of several of the metabolites. The various medicinal properties of TC were extensively researched. The most essential portions of the plant in Ayurvedic medicines are the stems. Bioactive phytochemicals such as steroidal lactones, alkaloids, diterpenoids, and phenolic compounds are present in the roots and leaves. Metabolomic analysis revealed that, in addition to the season and geographical region of the sample collected, the metabolite profiles of TC also depend on the parts of the plant taken as a sample and also the plant's stage of growth. The amounts of secondary metabolites differed between morpho/chemotypes within the TC species. Despite the fact that research on TC began several decades ago, the diversity of phytoconstituents was not appreciated because of a lack of reliable techniques for phytochemical fingerprinting. The uncovering of several novel metabolites was aided by advances in chromatography combined with mass spectrometry. To produce a full metabolomic profile, researchers used mutually complementary techniques. Following that, data analysis and searches against spectrum databases allowed for signal annotation and interpretation of metabolites in large quantities without separating them separately. The current review includes a critical assessment of metabolomic data and an overview of the technique's various applications. It is vital to establish the metrics of quality control of herbal medicines in order to

关键词： Analytical tools metabolomics quality control secondary metabolites Tinospora cordifolia

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Bioactive compounds,nutraceutical values and its application in food product development of oyster mushroom

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Journal of Future Foods 2024年第4期4卷 335-342页

作者： Phuritshabam Vivekanandini Devi Jasmin islam Pameena Narzary Daisy Sharma Farhanaz Sultana Faculty of Science Assam down town UniversityGuwahatiAssam 781026India

Oyster mushroom(Pleurotus ostreatus)is one of the popular edible mushrooms and is widely cultivated throughout the world for its unique delicacy in flavor,aroma and *** exhibit excellent sources of biological proteins,fber,vitamins,and ***,their demands are increasing due to the presence of bioactive components such as phenol,flavonoid,terpenes,polysaccharides and reported to possess anti-microbial,anti-cancer,anti-hyperlipidemia,anti-diabetic,anti-inflammatory and immunostimulant *** to their beneficial health effects,they act as a potential source for formulation of functionalσr value added food *** objective of the review is to emphasize the remarkable nutitional properties and their signifcant relationship concening hea1th-promoting properties which view oyster mushrooms as a superfood and plant-based-mutraceuticals food.

关键词： Oyster mushroom Nutaceutical Bioactive molecules Antioxidant Food product development

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