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A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements from Arabidopsis thaliana

Journal of Integrative Plant Biology 2014年第6期56卷 527-538页

作者： mohammad Amin Omidbakhshfard Flavia Vischi Winck Samuel Arvidsson Diego m.ria?o-Pachón Bernd mueller-Roeber University of Potsdam Institute of Biochemistry and Biology Potsdam-Golm 14476 Germany max-Planck Institute of molecular Plant Physiology Potsdam-Golm 14476 Germany Brazilian Bioethanol Science and Technology Laboratory (CTBE) Brazilian Center of Research in Energy and Materials (CNPEM) Campinas Brazil

The control of gene expression by transcriptional regulators and other types of functional y relevant DNA transactions such as chromatin remodeling and replication underlie a vast spectrum of biological processes in al organisms. DNA transactions require the control ed interaction of proteins with DNA sequence motifs which are often located in nucleosome-depleted regions （NDRs） of the chromatin. Formaldehyde-assisted isolation of regulatory elements （FAIRE） has been established as an easy-to-implement method for the isolation of NDRs from a number of eukaryotic organisms, and it has been successful y employed for the discovery of new regulatory segments in genomic DNA from, for example, yeast, Drosophila, and humans. Until today, however, FAIRE has only rarely been employed in plant research and currently no detailed FAIRE protocol for plants has been published. Here, we provide a step-by-step FAIRE protocol for NDR discovery in Arabidopsis thaliana. We demonstrate that NDRs isolated from plant chromatin are readily amenable to quantitative polymerase chain reaction and next-generation sequencing. Only minor modification of the FAIRE protocol wil be needed to adapt it to other plants, thus facilitating the global inventory of regulatory regions across species.

关键词： Arabidopsis thaliana chromatin cis-regulatory elements epigenomics FAIRE-qPCR FAIRE-seq gene expression gene regulatory network transcription factor

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Neuroprotective agents effective against radiation damage of central nervous system

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Neural Regeneration Research 2022年第9期17卷 1885-1892页

作者： m.ria Lalkovičová Laboratory of Radiation Biology Joint Institute for Nuclear ResearchDubnaRussia Slovak Academy of Sciences Institute of Experimental PhysicsKošiceSlovakia

Ionizing radiation caused by medical treatments,nuclear events or even space flights can irreversibly damage structure and function of brain *** can result in serious brain damage,with memory and behavior disorders,or even fatal oncologic or neurodegenerative *** used treatments and drugs are mostly targeting biochemical processes of cell apoptosis,radiation toxicity,neuroinflammation,and conditions such as cognitive-behavioral disturbances or others that result from the radiation *** most drugs,the side effects and potential toxicity are also to be ***,many agents have not been approved for clinical use *** this review,we focus on the latest and most effective agents that have been used in animal and also in the human research,and clinical *** could have the potential therapeutical use in cases of radiation damage of central nervous system,and also in prevention considering their radioprotecting effect of nervous tissue.

关键词： antioxidants biomedical neuroprotectants central nervous system ionizing radiation neuroprotection radiation injury radiomitigators radioprotectants radioprotection therapeutics

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Is there a potential of circulating miRNAs as biomarkers in rheumatic diseases?

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Genes & Diseases 2023年第4期10卷 1263-1278页

作者： Klára Prajzlerová Ladislav Senolt m.ria Filková Institute of Rheumatology Prague 12800Czech Republic Department of Rheumatology First Faculty of MedicineCharles UniversityPrague 12800Czech Republic

t microRNAs(miRNAs)are small non-coding single-stranded RNAs of about 22 nucle-otides in length that act as post-transcriptional regulators of gene *** on the complementarity between miRNA and target mRNA,cleavage,destabilization,or transla-tional suppression of mRNA occurs within the RISC(RNA-induced silencing complex).As gene expression regulators,miRNAs are involved in a variety of biological *** of miRNAs and their target genes contribute to the pathophysiology of many diseases,including autoimmune and inflammatory *** are also present extracellularly in their sta-ble form in body *** incorporation into membrane vesicles or protein complexes with Ago2,HDL,or nucleophosmin 1 protects them against ***-free miRNAs can be deliv-ered to another cell in vitro and maintain their functional ***,miRNAs can be considered mediators of intercellular *** remarkable stability of cell-free miRNAs and their accessibility in body fluid makes them potential diagnostic or prognostic bio-markers and potential therapeutic *** we provide an overview of the potential role of circulating miRNAs as biomarkers of disease activity,therapeutic response,or diagnosis in rheumatic *** circulating miRNAs reflect their involvement in the pathogenesis,while for plenty,their pathogenetic mechanisms remain to be *** miRNAs described as biomarkers were also shown to be of therapeutic potential,and some miRNAs arealready tested in clinical trials.

关键词： Biomarker Diagnosis miRNA Rheumatic diseases Therapy

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Key elements determining the intestinal region-specific environment of enteric neurons in type 1 diabetes

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World Journal of Gastroenterology 2023年第18期29卷 2704-2716页

作者： m.ria Bagyánszki Nikolett Bódi Department of Physiology Anatomy and NeuroscienceFaculty of Science and InformaticsUniversity of SzegedSzeged H-6726Hungary

Diabetes,as a metabolic disorder,is accompanied with several gastrointestinal(GI)symptoms,like abdominal pain,gastroparesis,diarrhoea or *** and complex enteric nervous system damage is confirmed in the background of these diabetic motility *** anatomical length of the GI tract,as well as genetic,developmental,structural and functional differences between its segments contribute to the distinct,intestinal region-specific effects of *** observations support and highlight the importance of a regional approach in diabetes-related enteric *** large and microvessels are essential for the blood supply of enteric *** morpho-functional linkage exists between enteric neurons and enteroglia,however,there is also a reciprocal communication between enteric neurons and immune cells on which intestinal microbial composition has crucial *** this point of view,it is more appropriate to say that enteric neurons partake in multidirectional communication and interact with these key players of the intestinal *** interplays may differ from segment to segment,thus,the microenvironment of enteric neurons could be considered strictly *** goal of this review is to summarize the main tissue components and molecular factors,such as enteric glia cells,interstitial cells of Cajal,gut vasculature,intestinal epithelium,gut microbiota,immune cells,enteroendocrine cells,prooxidants,antioxidant molecules and extracellular matrix,which create and determine a gut region-dependent neuronal environment in diabetes.

关键词： Enteric neurons Neuronal environment Gut region specificity Type 1 diabetes,Hyperglycemia microbiota-gut interactions

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Rilmenidine prevents blood pressure increase in rats with compromised nitric oxide production

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Acta Pharmacologica Sinica 2004年第12期25卷 74-80页

作者： m.ria GEROV,Jozef TRK,Ol’ga PECHV,Jana mATUKOV Institute ofNormal and Pathological Physiology SlovakAcademy of Sciences 813 71 Bratislava Slovak Republic Institute ofNormal and Pathological Physiology SlovakAcademy of Sciences 813 71 Bratislava Slovak Republic Institute ofNormal and Pathological Physiology SlovakAcademy of Sciences 813 71 Bratislava Slovak Republic Institute of Pathophysiology medical School Comenius University Bratislava Slovak Republic Now in Center for Blood Research and Department of Pathology Harvard medicalSchool Boston USA.

AIm: To search tools of high blood pressure in the model of nitric oxide (NO)-defective hypertension, and the study focused on the effect of rilmenidine, agonist of imidazoline receptors, which was suggested to modulate central sympathetic outflow. mETHODS: Three experimental groups, each consisting of 7 rats, were used: (I) rats with inhibition of NO synthase (NOS) by NG-nitro-L-arginine methyl ester (L-NAmE) 40 mg·kg-1·d-1 for 4 weeks in drinking water, (II) rats with inhibited NOS as in group I , plus agonist of imidazoline receptors rilmenidine 3 mg·kg-1·d-1 for 4weeks by gavage, and(III) control rats. Systolic blood pressure wasmeasured weekly noninvasively. At the end of experiment aortic ring isometric tension was followed, NOS expression (aorta, left ventricle), and NOS activity (left ventricle and brain) were determined. RESULTS: In the group I systolic blood pressure in- creased significantly, aortic ring relaxation to acetylcholine was significantly attenuated. Rilmenidine administered simultaneously with L-NAmE (group II) prevented the increase of blood pressure which did not differ significantly from control values; aortic ring relaxation to acetylcholine did not differ from control. No change in NOS expres- sion (aorta and left ventricle) was found in groups I and II. Significant decline in NOS activity (left ventricle and brain) wasfound in groups I and II. CONCLUSION: Rilmenidinehas aremarkable role inNO-defective hypertension, possibly by inhibiting central sympathetic outflow and by affecting receptors in vascular smooth muscle also. The prime cause of hypertension in this experimental model - the compromised production of NO due to inhibition of NOS - was not affected by rilmenidine.

关键词： NO deficiency hypertension imidazoline receptor nitric-oxide synthase sympathetic activity

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Region-dependent effects of diabetes and insulin-replacement on neuronal nitric oxide synthase-and heme oxygenase-immunoreactive submucous neurons

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World Journal of Gastroenterology 2017年第41期23卷 7359-7368页

作者： Nikolett Bódi Zita Szalai Lalitha Chandrakumar m.ria Bagyánszki Department of Physiology Anatomy and Neuro-science Faculty of Science and Informatics University of Szeged

AIm To investigate the intestinal segment-specific effects of diabetes and insulin replacement on the density of different subpopulations of submucous neurons. mETHODS Ten weeks after the onset of type 1 diabetes samples were taken from the duodenum, ileum and colon of streptozotocin-induce diabetic, insulin-treated diabetic and sex-and age-matched control rats. Whole-mount preparations of submucous plexus were prepared from the different gut segments for quantitative fluorescent immunohistochemistry. The following double-immunostainings were performed: neuronal nitric oxide synthase(n NOS) and Hu C/D, heme oxygenase(HO) 1 and peripherin, as well as HO2 and peripherin. The density of n NOS-, HO1-and HO2-immunoreactive(IR) neurons was determined as a percentage of the total number of submucous neurons. RESULTS The total number of submucous neurons and the proportion of n NOS-, HO1-and HO2-IR subpopulations were not affected in the duodenal ganglia of control, diabetic and insulin-treated rats. While the total neuronal number did not change in either the ileum or the colon, the density of nitrergic neurons exhibited a 2-and 3-fold increase in the diabetic ileum and colon, respectively, which was further enhanced after insulin replacement. The presence of HO1-and HO2-IR submucous neurons was robust in the colon of controls(38.4%-50.8%), whereas it was significantly lower in the small intestinal segments(0.0%-4.2%, P m and a decrease in the colon of the proportion of HO-IR neurons in insulin-treated diabetic animals. CONCLUSION Diabetes and immediate insulin replacement induce the most pronounced region-specific alterations of n NOS-, HO1-and HO2-IR submucous neuronal density in the distal parts of the gut.

关键词： Nitrergic neurons Heme oxygenase 1 Heme oxygenase 2 Submucous neurons Gut regionspecificity Diabetes Insulin

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Tensile and fracture properties of an mg-RE-Zn alloy at elevated temperatures

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Journal of Rare Earths 2014年第6期32卷 564-572页

作者： TROJANOVZuzanka DONI Tibor LUK Pavel PALEK Peter CHALUPOV m.ria TILLOV Eva BASTOVANSKY Ronald Faculty of mathematics and Physics Charles University Faculty of mechanical Engineering University of Zilina

magnesium alloy EZ10 （mg-RE-Zn） was deformed in tension at temperatures from 20 up to 520℃. A rapid decrease of the yield and tensile strength with temperature was observed at temperatures higher than 300 ℃. On the other hand, ductility of sam-ples rapidly increased in the same temperature range. Light microscopy and scanning electron microscopy was used to reveal the rea-son for these behaviours. Intermetallic particles in grain boundaries are responsible for excellent mechanical properties at lower tem-peratures. Diffusional processes occurring at temperatures higher than 300 ℃ significantly influenced the deformation mechanism as well as the fracture character.

关键词： magnesium alloy tension dislocation slip twinning dynamic recrystallization grain boundary sliding, fracture, cavitation rare

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Evaluation of granulability and absorbtivity of biomass in agglomeration mixture

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Journal of Central South University 2017年第10期24卷 2260-2265页

作者： Hudák Jozef Lesko Jaroslav Semanová Zuzana Frohlichová m.ria Findorák Róbert Legemza Jaroslav Institute of metallurgy Faculty of MetallurgyTechnical University of KosiceKosice04200Slovakia

The granulability and absorbtivity of sawdust and coke breeze were *** properties are important within the preparation of agglomeration *** have a significant impact on plynodynamic batch *** of materials to wet is a fundamental condition of granulability of *** and water absorption of wood with liquids is generally significantly affected by their chemical *** important factors affecting the wetting process are undoubtedly the wood moisture content,the value of the surface tension of liquid media and their chemical *** increasing moisture content of wood,the time to equilibrium *** of water absorption and granulability of sawdust was conducted to seek their possible use as a partial replacement of coke dust in the production of the *** have been realized with alder,oak and pine sawdust and reference material-coke *** materials were divided to four classes of granularity:supplied material,1-2 mm,0.5-1 mm and less than 0.5 *** different liquid media were used:water 16°C,water 60°C,soapy water,lime milk and surfactant.

关键词： agglomeration biomass coke breeze granulability absorbtivity

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O_(3) based advanced oxidation for ibuprofen degradation

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Chinese Journal of Chemical Engineering 2022年第2期35卷 277-284页

作者： Vitória m.Almeida Carla A.Orge m.Fernando R.Pereira O.SaloméG.P.Soares Laboratory of Separation and Reaction Engineering-Laboratory of Catalysis and materials (LSRE-LCM)Faculdade de Engenharia da Universidade do PortoRua Dr.Roberto Frias4200-465 PortoPortugal

The degradation of the anti-inflammatory ibuprofen(IBP)was evaluated by several advanced oxidation *** was treated by single ozonation and oxidation with hydrogen peroxide(H_(2)O_(2)),as well as a combination of these *** order to improve the efficiency,the presence of catalysts such as original carbon nanotubes,labelled as CNT,and iron oxide supported on carbon nanotubes,named as Fe/CNT sample,was *** evolution of IBP degradation,mineralization and toxicity of the solutions was *** formation of intermediates was also *** the non-catalytic processes,IBP was faster removed by single ozonation,whereas no significant total organic carbon(TOC)removal was *** with H_(2)O_(2) did not present satisfactory *** ozone and H_(2)O_(2) were combined,a higher mineralization was attained(70%after 180 min of reaction).On the other hand,in the catalytic processes,this combined process allowed the fastest IBP *** terms of mineralization degree,the presence of Fe/CNT increases the removal rate in the first hour of reaction,achieving a TOC removal of 85%.Four compounds were detected as *** treated solutions presented lower toxicity than the initial solution,suggesting that the released intermediates during applied processes are less toxic.

关键词： Advanced oxidation processes Catalysts Emerging pollutants Ibuprofen

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Characterization of the High-Strength mg–3Nd–0.5Zn Alloy Prepared by Thermomechanical Processing

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Acta metallurgica Sinica(English Letters) 2019年第3期32卷 321-331页

作者： Ji■í Kub■sek Drahomír Dvorsk■ Jozef Vesel■ Peter min■rik m.ria Zemkov■ Dalibor Vojtěch Department of metals and Corrosion Engineering Faculty of Chemical Technology University of Chemistry and Technology Prague Department of Physics of materials Charles University

magnesium alloys based on Nd and Zn are promising materials for both aviation industry and medical *** mechanical properties of these materials can be achieved by thermomechanical processing such as extrusion or rolling and by aging treatment, which can significantly strengthen the alloy. The question remains especially about the connection of texture strength created in the alloys based on the specific conditions of preparation. This work focuses on the mg–3 Nd–0.5 Zn magnesium alloy prepared by hot extrusion of the as-cast state at two different temperatures combined with heat pre-treatment. Extrusion ratio of 16 and rate of 0.2 mm/s at 350 and 400 °C were selected for material preparation. The structures of prepared materials were studied by scanning electron microscopy and transmission electron microscopy. The effect of microstructure on mechanical properties was evaluated. Obtained results revealed the strong effect of thermal pre-treatment on final microstructure and mechanical properties of extruded materials. The Hall–Petch relation between grain size and tensile yield strength has been suggested in this paper based on the literature review and presented data. The observed behavior strongly supports the fact that the Hall–Petch of extruded mg–3Nd–0.5 Zn alloys with different texture intensities cannot be clearly estimated and predicted. In addition, Hall–Petch relations presented in literature can be sufficiently obtained only for fraction of the mg–3Nd–0.5 Zn alloys.

关键词： mg–Nd–Zn alloys Extrusion Thermal treatment microstructure mechanical properties

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