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Regularized quantile regression for SNP marker estimation of pig growth curves

Journal of Animal Science and Biotechnology 2017年第4期8卷 824-832页

作者： L.m.A.Barroso m.nascimento A.C.C.nascimento1 F.F.Silva N.V.L.Serao C.D.Cruz m.D.V.Resende F.L.Silva C.F.Azevedo P.S.Lopes S.E.F.Guimaraes Department of Statistics Federal University of Vicosa Av. P H Rolfs s/nUniversity Campus Vicosa MG 36570-000 Brazil Department of Animal Science Federal University of Vicosa Av. P H Rolfs s/n University CampusVicosa MG 36570-000 Brazil Department of Animal Science Iowa State University Kildee Hall 50011 Ames Iowa USA Department of General Biology Federal University of Vicosa Av. P H Rolfs s/n University CampusVicosa MG 36570-000 Brazil Embrapa Forestry Estrada da Ribeira km 111Colombo PR Brazil. Department of Plant Science Federal University of Vicosa Av. P H Rolfs s/n University Campus Vicosa MG 36570-000 Brazil

Background: Genomic growth curves are general y defined only in terms of population mean; an alternative approach that has not yet been exploited in genomic analyses of growth curves is the Quantile Regression(QR). This methodology allows for the estimation of marker effects at different levels of the variable of interest. We aimed to propose and evaluate a regularized quantile regression for SNP marker effect estimation of pig growth curves, as well as to identify the chromosome regions of the most relevant markers and to estimate the genetic individual weight trajectory over time(genomic growth curve) under different quantiles(levels).Results: The regularized quantile regression(RQR) enabled the discovery, at different levels of interest(quantiles), of the most relevant markers al owing for the identification of QTL regions. We found the same relevant markers simultaneously affecting different growth curve parameters(mature weight and maturity rate): two(ALGA0096701 and ALGA0029483)for RQR(0.2), one(ALGA0096701) for RQR(0.5), and one(ALGA0003761) for RQR(0.8). Three average genomic growth curves were obtained and the behavior was explained by the curve in quantile 0.2, which differed from the ***: RQR allowed for the construction of genomic growth curves, which is the key to identifying and selecting the most desirable animals for breeding purposes. Furthermore, the proposed model enabled us to find, at different levels of interest(quantiles), the most relevant markers for each trait(growth curve parameter estimates) and their respective chromosomal positions(identification of new QTL regions for growth curves in pigs). These markers can be exploited under the context of marker assisted selection while aiming to change the shape of pig growth curves.

关键词： Genome association Growth curve Pig QTL Regularized quantile regression

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Short-term microbial responses to soluble inorganic P input in a tropical lowland rain forest in Amazonia

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Pedosphere 2021年第6期31卷 964-972页

作者： Yuri W.L.DE SOUSA Erika BUSCARDO Carlos A.N.QUESADA Henrique E.m.nascimento Laszlo NAGY National Research Institute for Amazonia Manaus 69067-375(Brazil) Department of Forestry University of BrasiliaBrasilia 70910-900(Brazil) Centre for Functional Ecology University of CoimbraCoimbra 3000-456(Portugal) Department of Animal Biology University of CampinasCampinas 13083-862(Brazil)

In non-flooded lowland rain forests with low soil phosphorus(P)in parts of Amazonia,P cycling largely occurs via leaf litter recycling by arbuscular mycorrhizal(Am)fungal *** high input of P into these ecosystems occurs during drought years with increased *** the length and frequency of drought events are projected to increase in the region,a single-dose nutrient addition experiment was carried out to test how this would impact P *** application rate of 4 kg P ha^(-1) was used,which corresponds to twice the amount of litter-derived P in an average *** was hypothesized that i)the added mineral P would be immobilized by soil microorganisms,leading to measurable increase in soil microbial biomass carbon(C)and P and ii)Am colonization rate would be reduced by the pulse in mineral P available for plant *** results did not support either of our *** addition of P did not have an effect on Am root colonization,nor was P immobilized by soil microbiota during the experimental *** lack of a difference between the control and treatment at our study site could be attributed to the relatively low one-off dose of P applied that did not change either the colonization rate of roots by Am fungi or the amount of soil available labile *** obtain a mechanistic understanding of the availability,capture,and use of P by plant-symbiont associations in tropical rain forest ecosystems,further integrated studies of the soil-plant system combining long-term nutrient manipulations,modeling,and experimental approaches are required.

关键词： Amazon basin arbuscular mycorrhizal fungi nutrient addition phosphorus cycling soil microbial biomass

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Treatability studies of naphthalene in soil,water and air with persulfate activated by iron(Ⅱ)

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Journal of Environmental Sciences 2020年第4期32卷 67-77页

作者： Gabriela P.mendes Vivian m.A.magalhaes Lélia C·R·Soares Rayanne m.Aranha Claudio A.O.nascimento marilda m.G.R.Vianna Osvaldo Chiavone-Filho Department of Chemical Engineering University of Sao PauloSPf 05508-000Brazil Department of Chemical Engineering Federal University of Rio Grande Do NorteNatalRN59072-970Brazil

Chemical oxidation was applied to an artificially contaminated soil with naphthalene(NAP).Evaluation of NAP distribution and mass reduction in soil,water and air phases was carried out through mass *** of NAP distribution and mass reduction in soil,water and air phases was carried out through mass *** importance of the air phase analysis was emphasized by demonstrating how NAP behaves in a sealed system over a 4 hr reaction *** of Experiments method was applied to the following variables:sodium persulfate concentration[SP],ferrous sulfate concentration[FeS04],and *** system operated with a prefixed solid to liquid ratio of 1:*** following conditions resulted in optimum NAP removal[SP]=18.37 g/L,[FeSO4]=4.25 g/L and pH=*** the end of the 4 hr reaction,62%of NAP was *** the soil phase,the chemical oxidation reduced the NAP concentration thus achieving levels which comply with Brazilian and USA environmental *** the NAP partitioning view,the monitoring of each phase allowed the variabilities assessment over the process,refining the knowledge of mass *** on NAP distribution in the system,this study demonstrates the importance of evaluating the presence of semi-volatile and volatile organic compounds in the air phase during remediation,so that there is greater control of the system as to the distribution and presence of the contaminant in the *** results highlight the importance of treating the contaminant in all its phases at the contaminated site.

关键词： Chemical oxidation Phase distribution Degradation kinetics PAH Soil remediation mass balance

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Experimental statistic design applied for obtaining Zn:xCe by microwave-assisted hydrothermal method with photocatalytic property

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Journal of Advanced Ceramics 2016年第2期5卷 103-110页

作者： Y.F.GOmES A.K.FREITAS R.m.nascimento m.R.D.BOmIO C.A.PASKOCImAS F.V.mOTTA Departamento de Engenharia de materiais Universidade Federal do Rio Grande do Norte 59078-900 Natal/RN Av.Sen.Salgado Filho 3000 CEP 59072-970 Brazil

In this study, the nanostructures of pure ZnO and ZnO:xCe3+ were prepared using statistic design—factorial design 3(3?1)?3-level and mixed-level factorials and fractional with replicates in the central point, totaling 11 experiments. The experiments were performed using the microwave-assisted hydrothermal (mAH) method with Ce3+ concentration of 2 and 4 mol% at 60, 110, and 160 °C for 10, 20, and 30 min. X-ray diffraction (XRD), scanning electron microscopy (SEm), and optical diffuse reflectance were used to characterize the products. The fractional factorial design indicated the optimal design area, and the studies were continued by ridge analysis. The analysis of variance (ANOVA), the Pareto, and the model adjusted to the conditions proposed in this study due to the determination coefficient of 99.9%, variance (R 2), and response surface generated were satisfactory, thus having an optimization in the process of obtaining ZnO doped with Ce.

关键词： hydrothermal ZnO cerium photocatalytic activity factorial design 3(3-1)

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Tree structure and diversity of lowland Atlantic forest fragments：comparison of disturbed and undisturbed remnants

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Journal of Forestry Research 2016年第3期27卷 605-609页

作者： Fabricio Alvim Carvalho Joao marcelo Alvarenga Braga marcelo Trindade nascimento Departamento de Botanica Universidade Federal de Juiz de Fora. Campus Universitario s/n Sao PedroJuiz de Fora-MG 36036-900 Brazil Instituto de Pesquisas do Jardim Botanico do Rio de Janeiro. Rio de Janeiro-RJ Brazil Laboratorio de Ciencias Ambientais CBB Universidade Estadual do Norte Fluminense Campos dos Goytacazes-RJ 28013-602 Brazil

This study describes the tree community structure of three moist lowland Atlantic Forest fragments in Rio de Janeiro State, southeastern Brazil. Two fragments were disturbed and an undisturbed one was used as reference. Our hypothesis was that disturbed fragments show distinct structural patterns in comparison with undisturbed stands due to past disturbance practices and forest fragmentation. Four 100 ×5 m sampling plots were demarcated in each fragment and all live and dead trees with DBH C 5 cm were located, measured and identified. The results supported our hypothesis, due to the high values found for standing dead trees, an increase of dominance of a few pioneer species, lower values of large trees and species richness in disturbed fragments in comparison with the undisturbed one. The advanced fragmentation process in the Southern Brazilian lowland areas and the high species richness in undisturbed areas highlight these forest fragments as priority areas for conservation and management.

关键词： Phytosociology Tree community Forestfragmentation . Hotspot Brazil

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Aerodynamic Effects Compensation on multi-Rotor UAVs Based on a Neural Network Control Allocation Approach

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IEEE/CAA Journal of Automatica Sinica 2022年第2期9卷 295-312页

作者： Sarah P.madruga Augusto H.B.m.Tavares Saulo O.D.Luiz Tiago P.do nascimento Antonio marcus N.Lima Graduate Program of Electrical Engineering Universidade Federal de Campina GrandeCampina Grande-PBBrazil Department of Electrical Engineering Universidade Federal de Campina GrandeCampina Grande-PBBrazil IEEE Department of Computer Systems Universidade Federal da ParaibaJoao Pessoa-PBBrazil

This paper shows that the aerodynamic effects can be compensated in a quadrotor system by means of a control allocation approach using neural ***,the system performance can be improved by replacing the classic allocation matrix,without using the aerodynamic inflow equations *** network training is performed offline,which requires low computational *** target system is a Parrot mAmBO drone whose flight control is composed of PD-PID controllers followed by the proposed neural network control allocation *** a quadrotor is particularly susceptible to the aerodynamics effects of interest to this work,because of its small *** compared the mechanical torques commanded by the flight controller,i.e.,the control input,to those actually generated by the actuators and established at the *** was observed that the proposed neural network was able to closely match them,while the classic allocation matrix could not achieve *** allocation error was also determined in both ***,the closed-loop performance also improved with the use of the proposed neural network control allocation,as well as the quality of the thrust and torque signals,in which we perceived a much less noisy behavior.

关键词： Aerodynamics effects control allocation minidrone multi-rotor UAV neural networks

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Unveiling an important interaction in forestry:Ectomyelois muriscis and Khaya grandifoliola cankers and tree growth

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Journal of Forestry Research 2021年第3期32卷 1287-1293页

作者： Lísias Coelho AndréRTerra nascimento Jean Carlos Santos Vinícius Flabes Silva Instituto de Ciências Agrárias Universidade Federal de UberlandiaUberlandiaBrazil Instituto de Biologia Universidade Federal de UberlandiaUberlandiaBrazil Departamento de Ecologia Universidade Federal de SergipeSergipeBrazil

African mahogany,Khaya grandifoliola ***.,is the most planted mahogany species in Brazil,and became the choice species when plantations of Brazilian mahogany,Swietenia macrophyla King became unsustainable due to their susceptibility to the shoot borer Hypsipyla grandella *** study evaluated plantation growth and the occurrence of cankers associated with Ectomyelois muriscis Dyar *** recorded plantation volume,survival,and canker incidence of a plantation established in 2010 at 6 m×5.5 m *** were collected and reared on canker bark fragments until final adult *** were frequently associated with Ectomyelois muriscis *** average incidence of the moth(2.9%)was not a significant concern,however,an extreme incidence of 45%would indicate that management strategies should be *** is the first report of Ectomyelois muriscis attacking the bark of Khaya grandifoliola in the Cerrado biome.

关键词： African mahogany Stem cankers Potential pest Stand growth

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Hormonal modulation of reproduction and fertility signaling in polistine wasps

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Current Zoology 2021年第5期67卷 519-530页

作者： Cintia Akemi OI Rafael Carvalho DA SILVA Ian STEVENS Helena mendes FERREIRA Fabio Santos nascimento Tom WENSELEERS Laboratory of Socioecology and Social Evolution KU LeuvenLeuven 3000Belgium Faculdade de Filosofia Ciencias e Letras de Ribeirao PretoDepartamento de BiologiaUniversidade de Sao Paulo—USPRibeirao PretoSP 14040-901Brazil

In social insects,it has been suggested that reproduction and the production of particular fertilitylinked cuticular hydrocarbons(CHC)may be under shared juvenile hormone(JH)control,and this could have been key in predisposing such cues to later evolve into full-fledged queen pheromone ***,to date,only few studies have experimentally tested this“hormonal pleiotropy”***,we formally test this hypothesis using data from four species of Polistine wasps,Polistes dominula,Polistes satan,mischocyttarus metathoracicus,and mischocyttarus cassununga,and experimental treatments with JH using the JH analogue methoprene and the anti-JH *** line with reproduction being under JH control,our results show that across these four species,precocene significantly decreased ovary development when compared with both the acetone solvent-only control and the methoprene *** with the hormonal pleiotropy hypothesis,these effects on reproduction were further matched by subtle shifts in the CHC profiles,with univariate analyses showing that in *** and *** the abundance of particular linear alkanes and mono-methylated alkanes were affected by ovary development and our hormonal *** results indicate that in primitively eusocial wasps,and particularly in Polistes,reproduction and the production of some CHC cues are under joint JH *** suggest that pleiotropic links between reproduction and the production of such hydrocarbon cues have been key enablers for the origin of true fertility and queen signals in more derived,advanced eusocial insects.

关键词： Polistinae wasps fertility cues queen pheromones cuticular hydrocarbons juvenile hormone

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Chemical Characterization of Auriferous Ores from the Brazilian State of Paraiba

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Journal of minerals and materials Characterization and Engineering 2015年第1期3卷 9-14页

作者： marcelo Rodrigues do nascimento Artur m.G.Lourenco Instituto Federal de Educacao Ciencia e Tecnologia da ParaibaLaboratorio de FlotacaoCampina GrandeBrazil Universidade Federal de Campina Grande Programa de Pos-Graduacao em Engenharia CivilCampina GrandeBrazil

One of the most important problems facing the gold industry is that the placer and free milling gold ores are almost terminating. Hence, the use of refractory ores has been increased during the recent years. In general, gold refractory ores occurs in various types of deposits associated with a range of minerals. Among the refractory ores, the sulfide type is the most common. The methodology employed in the mining process depends on the mode of occurrence of the ore and on the particle size, shape and degree of purity of the auriferous species. We have undertaken a mineralogical investigation of a representative sample of a complex gold mining ore collected in the municipality of Princesa Isabel, Paraiba, Brazil, using X-ray fluorescence spectrometry, X-ray diffractometry, infrared spectroscopy, inductively coupled plasma-atomic emission spectrometry and the Fire Assay. The results showed that the arsenic content of the ore was closely related to the gold content, and that the occurrence of “invisible gold” was associated primarily with pyrite and secondarily with arsenopyrite. The sulfur content of the ore was directly related to its refractoriness. It is concluded that gold mineralization in the study area is mainly of the gold-quartz-sulfide veins (lode gold), while the gold found in the mini-fractures of the deposits is probably associated with the hydrothermal processes that occurred in the region.

关键词： Auriferous Ore Chemical Characterization X-Ray Fluorescence Spectrometry X-Ray Diffractometry Inductively Coupled Plasma-Atomic Emission Spectrometry

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Review of Studies on the Last Enzymes in Bacteriochlorophyll (Bchl) and Chlorophyll (Chl) Biosynthesis

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American Journal of Plant Sciences 2016年第12期7卷 1639-1651页

作者： Silvio m. D. nascimento Yuanyuan Zou Qi Cheng Biotechnology Research Institute Chinese Academy of Agricultural Sciences Beijing China

This paper summarizes the information available online related to mechanisms of Chlorophyll and Bacteriochlorophyll biosynthesis, emphasizing four enzymes in its last steps. The biosynthesis of Chlorophyll (Chl)/Bacteriochlorophyll (Bchl) is essential for the occurrence of photosynthesis. Four enzymes catalyze parts of the last chemical reactions steps to biosynthesize Bchl/Chl;they are: The Light-Dependent Protochlorophyllide (Pchlide) Oxidoreductase (LPOR: EC 1.***.1.33), the Light-Independent Pchlide oxidoreductase (DPOR: EC 1.***.7.7), Chlide Reductase (COR: EC 1.***.99.35) and the Divinyl Reductase (DVR: EC 1.***.1.75). These enzymes catalyze the reductions reactions of tetrapyrrole’s rings in the Chlorophyll and Bacteriochlorophyll biosynthesis process. This review has the aim to organize, analyze and compare the most important discoveries related to these four enzymes discovered so far. The comparisons are made with the information from the bibliography used, and the sequence of these enzymes got from online database. Sequence alignment, phylogenetic and molecular evolutionary analysis of all the four enzymes was conducted to find their levels of similarities.

关键词： Photosynthesis Chlorophyll Bacteriochlorophyll Biosynthesis Enzymes DVR DPOR LPOR and COR

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