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Genomic and transcriptomic analyses enable the identification of important genes associated with subcutaneous fat deposition in Holstein cows

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Journal of Genetics and Genomics 2023年第6期50卷 385-397页

作者： Hailiang Zhang Siyuan Mia luiz f.brito Lirong Hu Lei Wang Longgang Ma Qing Xu Gang Guo Ying Yu Yachun Wang Laboratory of Animal Genetics Breeding and ReproductionMinistry of Agriculture of ChinaNational Engineering Laboratory of Animal BreedingCollege of Animal Science and TechnologyChina Agricultural UniversityBeijing 100193China Department of Animal Sciences Purdue UniversityWest LafayetteIN 47907USA Institute of Life Sciences and Bioengineering Beijing Jiaotong UniversityBejing 100044China Beijing Sunlon Livestock Development Co.Ltd Beijing 100176China

Subcutaneous fat deposition has many important roles in dairy cattle,including immunological defense and mechanical *** main objectives of this study are to identify key candidate genes regulating subcutaneous fat deposition in high-producing dairy cows by integrating genomic and transcriptomic datasets.A total of 1654 genotyped Holstein cows are used to perform a genome-wide association study(GWAS)aiming to identify genes associated with subcutaneous fat ***,weighted gene co-expression network analyses(WGCNA)are conducted based on RNA-sequencing data of 34 cows and cow yield deviations of subcutaneous fat ***,differentially expressed(DE)m RNA,lnc RNA,and differentially alternative splicing genes are obtained for 12 Holstein cows with extreme and divergent phenotypes for subcutaneous fat ***-six protein-coding genes are identified as candidate genes regulating subcutaneous fat deposition in Holstein cattle based on *** overlapping genes are identified based on the analyses of DE genes and ***,the candidate genes identified based on GWAS,WGCNA,and analyses of DE genes are significantly enriched for pathways involved in metabolism,oxidative phosphorylation,thermogenesis,fatty acid degradation,and glycolysis/gluconeogenesis *** all findings,the NID2,STARD3,UfC1,DEDD,PPP1R1B,and USP21 genes are considered to be the most important candidate genes influencing subcutaneous fat deposition traits in Holstein *** study provides novel insights into the regulation mechanism underlying fat deposition in high-producing dairy cows,which will be useful when designing management and breeding strategies.

关键词： Bovine Body condition score Subcutaneous adipose GWAS WGCNA RNA-Seq

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Weighted single-step GWAS and RNA sequencing reveals key candidate genes associated with physiological indicators of heat stress in Holstein cattle

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Journal of Animal Science and Biotechnology 2022年第6期13卷 1714-1726页

作者： Hanpeng Luo Lirong Hu luiz f.brito Jinhuan Dou Abdul Sammad Yao Chang Longgang Ma Gang Guo Lin Liu Liwei Zhai Qing Xu Yachun Wang Laboratory of Animal Genetics Breeding and ReproductionMinistry of Agriculture of ChinaNational Engineering Laboratory of Animal BreedingCollege of Animal Science andTechnologyChina Agricultural UniversityNo.2Yuanmingyuanxi RoadHaidian DistrictBeijing 100193China Department of Animal Sciences Purdue UniversityWest LafayetteIN 47907USA College of Animal Science andTechnology Beijing University of AgricultureBeijing 100096China College of Animal Science Xinjiang Agricultural UniversityUrumqi 830052China Beijing Sunlon Livestock Development Company Limited Beijing 100029China Beijing Dairy Cattle Center Beijing 100192China College of Life Sciences and Bioengineering Beijing Jiaotong UniversityBeijing 100044China

Background: The study of molecular processes regulating heat stress response in dairy cattle is paramount for developing mitigation strategies to improve heat tolerance and animal welfare. Therefore, we aimed to identify quantitative trait loci(QTL) regions associated with three physiological indicators of heat stress response in Holstein cattle, including rectal temperature(RT), respiration rate score(RS), and drooling score(DS). We estimated genetic parameters for all three traits. Subsequently, a weighted single-step genome-wide association study(WssGWAS) was performed based on 3200 genotypes, 151,486 phenotypic records, and 38,101 animals in the pedigree file. The candidate genes located within the identified QTL regions were further investigated through RNA sequencing(RNA-seq) analyses of blood samples for four cows collected in April(non-heat stress group) and four cows collected in July(heat stress group).Results: The heritability estimates for RT, RS, and DS were 0.06, 0.04, and 0.03, respectively. fourteen, 19, and 20 genomic regions explained 2.94%, 3.74%, and 4.01% of the total additive genetic variance of RT, RS, and DS, respectively. Most of these genomic regions are located in the Bos taurus autosome(BTA) BTA3, BTA6, BTA8, BTA12, BTA14, BTA21, and BTA24. No genomic regions overlapped between the three indicators of heat stress, indicating the polygenic nature of heat tolerance and the complementary mechanisms involved in heat stress response. for the RNA-seq analyses, 2627 genes were significantly upregulated and 369 downregulated in the heat stress group in comparison to the control group. When integrating the WssGWAS, RNA-seq results, and existing literature, the key candidate genes associated with physiological indicators of heat stress in Holstein cattle are: PMAIP1, SBK1, TMEM33, GATB, CHORDC1, RTN4IP1, and ***: Physiological indicators of heat stress are heritable and can be improved through direct selection. fifty-three QTL regions

关键词： Climatic resilience Dairy cattle QTL mapping RNA sequencing WssGWAS

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Resource management at the network edge for federated learning

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Digital Communications and Networks 2024年第3期10卷 765-782页

作者： Silvana Trindade luiz f.Bittencourt Nelson L.S.da fonseca Institute of Computing State University of CampinasCampinasBrazil

federated learning has been explored as a promising solution for training machine learning models at the network edge,without sharing private user *** limited resources at the edge,new solutions must be developed to leverage the software and hardware resources as the existing solutions did not focus on resource management for network edge,specially for federated *** this paper,we describe the recent work on resource manage-ment at the edge and explore the challenges and future directions to allow the execution of federated learning at the *** such as the discovery of resources,deployment,load balancing,migration,and energy effi-ciency are discussed in the paper.

关键词： Resource management Edge computing federated learning Machine learning

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Optimization of a photovoltaic-battery system using deep reinforcement learning and load forecasting

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Energy and AI 2024年第2期16卷 168-183页

作者： António Corte Real G.Pontes Luz J.M.C.Sousa M.C.brito S.M.Vieira IDMEC Instituto Superior TécnicoUniversidade de LisboaLisboa1049-001Portugal Instituto Dom luiz Faculdade de CiênciasUniversidade de LisboaCampo Grande1749-016LisboaPortugal

Home Energy Management Systems(HEMS)are increasingly relevant for demand-side management at the residential level by collecting data(energy,weather,electricity prices)and controlling home appliances or storage *** control can be performed with classical models that find optimal solutions,with high real-time computational cost,or data-driven approaches,like Reinforcement Learning,that find good and flexible solutions,but depend on the availability of load and generation data and demand high computational resources for *** this work,a novel HEMS is proposed for the optimization of an electric battery operation in a real,online and data-driven environment that integrates state-of-the-art load forecasting combining CNN and LSTM neural networks to increase the robustness of *** Reinforcement Learning agents are trained with different algorithms(Double DQN,Dueling DQN,Rainbow and Proximal Policy Optimization)in order to minimize the cost of electricity purchase and to maximize photovoltaic self-consumption for a PV-Battery residential *** show that the best Reinforcement Learning agent achieves a 35%reduction in total cost when compared with an optimization-based agent.

关键词： Energy management system Deep reinforcement learning Demand-side management Load forecasting Deep learning Energy storage systems

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Clinical/Behavioral Monitoring of Rodents and Rabbits Undergoing Scientific Experiments

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Open Journal of Veterinary Medicine 2024年第5期14卷 91-109页

作者： luiz Cesar Cavalcanti Pereira Jhônata Willy Rocha Coelho Hyago da Silva Medeiros Elidio Rita de Cássia dos Passos ferraz Da Silva João Gabriel Regis Sobral Bárbara Alves de brito Soledade Leandro Thomaz Vilela Isabele Barbieri Dos Santos Institute of Science and Technology in Biomodels (ICTB) Oswaldo Cruz Foundation (FIOCRUZ) Rio de Janeiro Brazil Laboratory Animal facility of the Carlos Chagas Pavilion of the Animal Experimentation Center (CEA) Oswaldo Cruz Institute (IOC) Oswaldo Cruz Foundation (FIOCRUZ) Rio de Janeiro Brazil

Background: We currently have international and national guidelines regarding the assessment and monitoring of clinical signs and humane endpoints in animals used in teaching and research, which make the performance of these activities mandatory for any experiment and professional working in this area. Assigning the severity of a research experiment is the result of an analysis of records of observations of the animal’s behavior, and clinical signs. The aim of this study was to describe the importance of carrying out a severity assessment associated with clinical and behavioral monitoring of rodents and rabbits during experimentation to maintain the welfare of these animals undergoing scientific research. Methods: The literature search was carried out using the following terms: “Monitoring”;“Humane endpoints”;“Animal welfare”, “Rodents”;“Rabbits”, and as connectors “and”;“or”, in the following databases: PubMed;LILACS/BIREME and SciELO. Results: A total of 987 articles were identified in the databases, and 20 of these studies were included in this review. Conclusions: Humane endpoint protocols and procedure severity tables are of the utmost importance, both from an ethical point and to refine the results of research conducted on laboratory animals. They should be drawn up jointly by the teams responsible for the project and the maintenance of the animals during the research period, and the data obtained should be published so that the scientific community can have access to it, helping to disseminate these practices, as well as helping to draw up new procedures. Monitoring and evaluating the welfare and clinical condition of animals undergoing scientific research procedures is the responsibility of the professors, researchers, veterinarians, and animal facility coordinators. The Ethics Committee on the Use of Animals must monitor all the activities conducted with the animals, by inspecting the experimental procedures and the physical environment of the laboratory an

关键词： Monitoring Humane Endpoints Animal Welfare Experimental Design Laboratory Animals’ Investigations

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Predictors of residual force enhancement in voluntary contractions of elbow flexors

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Journal of Sport and Health Science 2018年第3期7卷 318-325页

作者： Heiliane de brito fontana Daiani de Campos Raphael luiz Sakugawa Biological Sciences Center Federal University of Santa CatarinaCampus Reitor Joao David Ferreira LimaFlorianopoilsSC 88040-900Brazil Biomechanic Laboratory Federal University of Santa CatarinaCampus Reitor Joao David Ferreira LimaFlorianopolisSC 88040-900Brazil

Background:The steady-state increase in muscle force generating potential following a lengthening contraction is called residual force enhancement(RfE).In this study,we aimed to test for differences in torque,electromyographic activity(EMG),and the associated neuromuscular efficiency(NME)between isometric voluntary contractions of elbow flexors preceded and not preceded by a lengthening *** dependence of such differences on(i)stretch amplitude,(ii)the region of the force-length(fxL)relationship where contraction occurs,and(iii)the individual's ability to produce(negative)work during the stretch was ***:Sixteen healthy adults participated in the *** flexor torque,angle,and biceps brachii EMG for purely isometric contractions(reference contractions)and for isometric contractions preceded by active stretches of 20°and 40°were measured at the ascending,plateau,and descending regions of subject-specific fxL *** contractions were performed in an isokinetic ***-factor(stretch×fxL region)repeated measures analysis of variance ANOVAs was used to analyze the effect of active stretch on EMG,torque,and NME across *** relationships between mechanical work during stretch-calculated as the torque-angular displacement integral-and the changes in EMG,torque,and NME were analyzed using Pearson ***:In general,torque,EMG,and NME following active stretches differed from the values observed for the purely isometric reference *** although the detailed effects of active stretch on torque and EMG differed between regions of the fxL relationship,NME increased by about 19%for all muscle *** to 30%of the interindividual variability in torque generating potential change in response to active stretching was accounted for by differences in(negative)work capacity between ***:Our results suggest that(i)RfE contributes to"flatten"the elbow flexor torque-angle relationship,favoring

关键词： force-length History-dependent properties Neuromuscular efficiency Upper limb Voluntary contractions

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Can rainfall seasonality trigger soil water repellency in a tropical riparian forest?

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Journal of forestry Research 2023年第3期34卷 773-780页

作者： Gleicon Queiroz de brito Johnny Rodrigues de Melo Murta Sérgio fernandes Mendonca filho luiz felippe Salemi Núcleo de Estudos e Pesquisas Ambientais e Limnológicas(NEPAL) Faculdade UnB de Planaltina(FUP)Universidade de Brasília(UnB)DFVila Nossa Senhora de FátimaÁrea Universitária 1Planaltina 73345-010Brazil

Though riparian areas generally have a shallow water table and higher soil moisture compared to up slope areas,climatic seasonality may trigger water repellency in tropical riparian forests,which,if persistent,could negatively affect essential ecosystem functions related to water resources protection such as reduced overland-flow,sediment transport,and nutrient *** objective of this study was to answer the following:can tropical riparian forests develop water repellency?If so,does water repellency affect infiltration on a seasonal basis?for this,water repellency and infiltration were measured in a grid of 72points during a dry and a wet month of a tropical riparian forest with a shallow water table in a region with highly marked climatic *** repellency and infiltration were significantly different between the wet and dry *** repellency affected negatively infiltration in the dry month,its effect in the wet month was *** a result,a higher infiltration capacity was observed over the wet *** research has claimed that the development and persistence of repellency in soils could promote other hydrological processes such as overland *** findings shown here demonstrate that such phenomenon does not persist longer than the dry season.

关键词： Hydrophobicity Gallery forest Aquifer recharge Climate change Erosion

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Dehydrated Natural feed for Cats: Influence on Apparent Digestibility Coefficient, feces Scores, and Serum Immune, Antioxidant, and Metabolic Biomarkers

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food and Nutrition Sciences 2024年第7期15卷 594-611页

作者： Bruno Giorgio de Oliveira Cécere Guilherme luiz Deolindo Bianca f. Bissacotti Priscila Marquezin Copetti Maria Rosa Chitolina Schetinger Bruna Klein Matheus Delamea Baldissera Thiago Pereira Ribeiro Walter Hugo Cuelho Suarez Daniel Pigatto Monteiro Aleksandro Schafer Da Silva Graduate Multicenter Program in Biochemistry and Molecular Biology University of the State of Santa Catarina Lages Brazil Department of Biochemistry and Molecular Biology Universidade Federal de Santa Maria (UFSM) Santa Maria Brazil Department of Animal Science Universidade Federal de Santa Maria (UFSM) Chapec Brazil Department of Health Science Universidade Franciscana (UFN) Santa Maria Brazil Department of Animal Nutrition Tectron-Tecnologia e Inovao Toledo Brazil

The present study aimed to determine whether natural dehydrated feed (DNf) can replace dry extruded feed while preserving the required daily intake, nutrient digestibility and benefits for immunity and antioxidant response in cats. The animals were divided into two groups of seven animals each. One group received DNf, and the other consumed commercial extruded dry feed (DCf). The experiment lasted 45 days and we measured daily consumption and collected blood and feces samples. The animals in the DNf group showed greater digestibility of fiber and mineral matter than DCf. Cats in the DNf group had a higher volume of feces. DNf cats had lower leukocyte and granulocyte counts and cholesterol levels. Serum enzymatic antioxidant responses and non-enzymatic were higher in DNf cats. Cats in the DNf group showed lower serum acute phase proteins in addition to a tendency toward a higher concentration of transferrin than in the DCf group. fecal Escherichia coli and total coliform counts of cats fed DNf were higher than DCf. We conclude that the daily consumption of cats is adequate. This feed had greater digestibility of fiber and mineral matter, in addition to an improvement in antioxidant and immunological responses.

关键词： Alternative feed Antioxidant Companion Animals Health

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Litterfall dynamics and soil carbon and nitrogen stocks in the Brazilian palm swamp ecosystems

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forest Ecosystems 2020年第3期7卷 499-510页

作者： Gracielle de brito Sales Taynan Aquilles Marinho Lessa Daniela Aparecida freitas Maria das Dores Magalhães Veloso Maria Ligia de Souza Silva luiz Arnaldo fernandes Leidivan Almeida frazão Instituto de Ciências Agrárias Universidade Federal de Minas GeraisAvenida Universitária1000Montes ClarosMG39404-547Brazil Universidade Estadual de Montes Claros Avenida Professor Rui Braga S/NMontes ClarosMG39401-089Brazil Universidade federal de Lavras Campus UniversitárioCP 3037LavrasMG37299-000Brazil

Background: This study aimed to determine the litterfall production, accumulation, decomposition rate and nutrient stocks, and to estimate the soil carbon(C) and nitrogen(N) stocks in three palm swamp ecosystems with different land use intensities in the Southeast of ***: Three palm swamp ecosystems with different land use intensities were evaluated: Agua Doce(AD),conserved area;Capivara(CV), area with small agricultural practices;and Buriti Grosso(BG), area with an intensive land use. Produced and accumulated litterfall from the Cerrado areas surrounding the palm swamps were collected from October 2014 to September 2015, and the Ca, Mg, K, and P concentrations were determined in the dry and rainy seasons. Soil samples were collected in the surrounding Cerrado and within the palm swamps until 100 cm soil depth to determine bulk density and soil C and N contents and ***: Annual litterfall production in the Cerrado surrounding palm swamps was similar in AD(3.58 Mg·ha^-1·year^-1) and CV(3.79 Mg·ha^-1·year^-1), and was lower in BG(2.84 Mg·ha^-1·year^-1), and was more intense during the dry season. furthermore, litterfall accumulation was higher in CV(7.12 Mg·ha^-1·year^-1) and BG(6.75 Mg·ha^-1·year^-1), culminating in lower decomposition rates. AD showed the highest decomposition rate(0.60) due to its vegetation structure and conservation. The macronutrient contents from the production and accumulated litterfall had a low influence of the land use, decreasing in the following order: Ca > K > Mg > P. Soils in CV and BG palm swamp areas showed higher values of C and N contents, due to the use of land for agricultural crops and cattle raising in an extensive(rangeland) system. The BG palm swamp, showed the highest C(124.03 Mg·ha^-1) and N(10.54 Mg·ha^-1) stocks due to the land use history with different agricultural practices over ***: The litterfall dynamics in the Cerrado surrounding palm swamps was more affected by climatic variables t

关键词： Nutrient cycling Soil fertility Soil organic matter Decomposition rate

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The transient receptor potential melastatin 2:a new therapeutical target for Parkinson's disease?

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Neural Regeneration Research 2023年第8期18卷 1652-1656页

作者： Ana flávia f.ferreira luiz Roberto G.Britto Department of Physiology and Biophysics Institute of Biomedical SciencesUniversity of São PauloSão PauloBrazil

The transient receptor potential melastatin 2 is a calcium-permeable cation channel member of the TRP family. Also known as an oxidative stress-activated channel, the transient receptor potential melastatin 2 gating mechanism is dependent on reactive oxygen species. In pathological conditions, transient receptor potential melastatin 2 is overactivated, leading to a Ca~(2+) influx that alters cell homeostasis and promotes cell death. The role of transient receptor potential melastatin 2 in neurodegenerative diseases, including Alzheimer's disease and ischemia, has already been described and reviewed. However, data on transient receptor potential melastatin 2 involvement in Parkinson's disease pathology has emerged only in recent years and the issue lacks review studies that focus specifically on this topic. The present review aims to elucidate the role of the transient receptor potential melastatin 2 channel in Parkinson's disease by reviewing, summarizing, and discussing the in vitro, in vivo, and human studies published until August 2022. Here we describe fourteen studies that evaluated the transient receptor potential melastatin 2 channel in Parkinson's disease. The Parkinson's disease model used, transient receptor potential melastatin 2 antagonist and genetic approaches, and the main outcomes reported were discussed. The studies described transient receptor potential melastatin 2 activation and enhanced expression in different Parkinson's disease models. They also evidenced protective and restorative effects when using transient receptor potential melastatin 2 antagonists, knockout, or silencing. This review provides a literature overview and suggests where there is a need for more research. As a perspective point, this review shows evidence that supports transient receptor potential melastatin 2 as a pharmacological target for Parkinson's disease in the future.

关键词： 1-methyl-4-phenyl-1 2 3 6-tetrahydropyridine(MPTP) 1-methyl-4-phenylpyridinium(MPP+) 6-hydroxydopamine AG490 clotrimazole flufenamic acid N-(p-amylcinnamoyl)anthranilic acid Parkinson's disease poly-ADPR polymerase type 1(PARP1) rotenone paraquat transient receptor potential melastatin 2(TRPM2)

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