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Segment Anything for Comprehensive Analysis of Grapevine Cluster Architecture and Berry Properties

Plant Phenomics 2024年第3期6卷 696-707页

作者： Efrain Torres-Lomas Jimena Lado-Bega Guillermo garcia-Zamora luis diaz-garcia Department of Viticulture and Enology University of California DavisDavisCA 95616USA Soil and Water Department Universidad de la RepublicaMontevideo 11400Uruguay

Grape cluster architecture and compactness are complex traits influencing disease susceptibility,fruit quality,and *** methods for these traits include visual scoring,manual methodologies,and computer vision,with the latter being the most scalable *** of the existing computer vision approaches for processing cluster images often rely on conventional segmentation or machine learning with extensive training and limited *** Segment Anything Model(SAM),a novel foundation model trained on a massive image dataset,enables automated object segmentation without additional *** study demonstrates out-of-the-box SAM's high accuracy in identifying individual berries in 2-dimensional(2D)cluster *** this model,we managed to segment approximately 3,500 cluster images,generating over 150,000 berry masks,each linked with spatial coordinates within their *** correlation between human-identified berries and SAM predictions was very strong(Pearson's r^(2)=0.96).Although the visible berry count in images typically underestimates the actual cluster berry count due to visibility issues,we demonstrated that this discrepancy could be adjusted using a linear regression model(adjusted R^(2)=0.87).We emphasized the critical importance of the angle at which the cluster is imaged,noting its substantial effect on berry counts and *** proposed different approaches in which berry location information facilitated the calculation of complex features related to cluster architecture and ***,we discussed SAM's potential integration into currently available pipelines for image generation and processing in vineyard conditions.

关键词： architecture analysis cluster anything berry comprehensive grapevine properties segment

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Invasive-invaded system of non-Lipschitz porous medium equations with advection

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International Journal of Biomathematics 2021年第7期14卷 299-327页

作者： Jose luis diaz Palencia Escuela Politecnica Superior Universidad Francisco de Vitoria Ctra.Pozuelo-Majadahonda Km 1 80028223Pozuelo de AlarconMadrid

This work provides analytical results towards applications in the field of invasive-invaded systems modeled with nonlinear diffusion and with *** results focus on showing regularity,existence and uniqueness of weak solutions using the condition of a nonlinear slightly positive parabolic operator and the reaction-absorption monotone *** coupling in the reaction-absorption terms,that characterizes the species interaction,impedes the formulation of a global comparison principle that is shown to exist ***,this work provides analytical solutions obtained as selfsimilar minimal and maximal profiles.A propagating diffusive front is shown to exist until the invaded specie notes the existence of the *** the desertion of the invaded st arts,the diffusive front vanishes globally and the nonlinear diffusion concentrates only on the propagating tail which exhibits finite ***,the invaded specie is shown to exhibit an exponential decay along a characteristic *** exponential decay is not trivial in the nonlinear diffusion case and confirms that the invasive continues to feed on the invaded during the desertion.

关键词： Nonlinearity reaction absorption coupled system diffusion porous media

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Some Comments on Zonal Polynomials and Their Expected Values with respect to ***

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Acta Mathematicae Applicatae Sinica 2017年第3期33卷 567-574页

作者： Jose A.diaz-garcia Ramon Gutierrez-Jaimez Department of Statistics and Computation Universidad Autonoma Agraria Antonio Narro25350 BuenavistaSaltilloCoahuilaMexico Department of Statistics and O.R University of GranadaGranada 18071Spain

In this paper, we give alternative proofs of some results in [15] （Li R.,1997） about the expected value of zonal polynomials.

关键词： elliptical matrix distributions random matrices zonal polynomials generalised Wishart distribution

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Nonlinear parabolic predator-prey coupled system with convection

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International Journal of Biomathematics 2021年第2期14卷 83-118页

作者： Jose luis diaz Palencia Mariano Fernandez Lopez University Foundation San Pablo CEU Spain

The aim of this work is to provide a formulation of two related nonlinear diffusive convective models in the form of coupled reaction-absorption ***,the postulated models are studied with an analytical *** on,numerical evidences are considered to account for a precise *** problem(P)analyzed is of the form:ut=δΔu+c⋅∇u+v^(n),vt=ϵΔv+c⋅∇v−um,n,m∈(0,1),u_(0)(x),v_(0)(x)>0∈L^(1)_(loc)(RN)∩L^(∞)(R^(N)).(0.1)Afterwards,a related problem P_(T)is studied:ut=δΔu+c⋅∇u−v^(n)(u−d),vt=ϵΔv+c⋅∇v−u^(m)v,n,m∈(0,1),u_(0)(x),v_(0)(x)>0∈L^(1)_(loc)(R^(N))∩L^(∞)(R^(N)).(0.2)The principal aspects for analysis are related to the existence and the derivation of particular solutions to reproduce the dynamic of the interacting *** the problem PT,we make use of the TW approach to study existence of solutions and precise evolution of *** that the term predator is used to refer to an invasive behavior,while the term prey is used for the invaded species.

关键词： Nonlinearity reaction absorption coupled system diffusion,traveling waves

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A Study on the Density of Agglomerates Prepared from Cork Wastes

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Journal of Materials Science & Technology 2003年第1期19卷 46-50页

作者： A.Macias-garcia A.diaz-Parralejo 等 AreaofMaterialsScienceandMetallurgyEngineering FacultyofIndustrialEngineeringUniversityofExtremadure06071BadaiozSpain AreaofMaterialsScienceandMetallurgyEngineering FacultyofIndustrialEngineeringU

The density of black regranulate (BR) of cork and of black agglomerate (BA) and composite agglomerate (CA) prepared fromsuch a waste by different methods was investigated. The preparation of the agglomerates was undertaken by controlling thespecimen thickness for BA and the particle size for BR and the binder dosage for CA. The mass changes produced in theoven-drying treatment at 376.15 K of the agglomerates and in their subsequent stabilization under ambient conditions werealso analyzed. The density was determined by standard methods. For BR, the bulk density first decreased and then increasedwith decreasing particle size. It was much lower than the apparent density of the agglomeration products of cork. Although toa lesser extent, the density was also lower for BA than for CA. It was higher for the smaller thickness specimens of BA. In thecase of CA, the density followed the same variation trends as for BR. Furthermore it increased significantly with the increasein resin dosage. This resulted in a noticeable increase in the weight loss during the oven-drying and in a significant decreasein the degree of moisture adsorption during the stabilization period of the agglomerate.

关键词： Cork Agglomerates Density

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Data model extension for security event notification with dynamic risk assessment purpose

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Science China(Information Sciences) 2013年第11期56卷 36-44页

作者： David LOPEZ Oscar PASTOR luis Javier garcia VILLALBA Group of Analysis Security and Systems (GASS) Department of Software Engineering and Artificial Intelligence (DISIA) School of Computer Science Universidad Complutense Madrid 28040 Spain

Dynamic risk assessment refers to a risk management framework where frequent updates of risk evaluation information are used to evaluate risk exposure,as close as possible to *** this paper,we present the incident object description exchange format extended model for dynamic risk *** format attempts to overcome the absence of integration and real-time communication between security systems and risk assessment *** model is based on the incident object definition exchange format,which is commonly used in the computer security incident response teams *** data model aims to facilitate a global vision of information systems risk by supplying real-time security events data to risk assessment tools based on renowned *** present a proof-of-concept scenario to demonstrate the usefulness of this integration and the proposed data model,and discuss the expected improvements.

关键词： dynamic risk assessment risk management DRA IODEF-DRA IODEF.

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Non-technical approach to the challenges of ecological architecture： Learning from Van der Laan

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Frontiers of Architectural Research 2016年第2期5卷 202-212页

作者： Maria-Jesus Gonzalez-diaz Justo garcia-Navarro Department of Agroforestry Engineering Construction Unit Universidad Politécnica de Madrid Madrid 28040 Spain

Up to now, ecology has a strong influence on the development of technical and instrumental aspects of architecture, such as renewable and efficient of resources and energy, COz emissions, air quality, water reuse, some social and economical aspects. These concepts define the physical keys and codes of the current ＇sustainable＇ architecture, normally instrumental but rarely and insufficiently theorised. But is not there another way of bringing us to nature？ We need a theoretical referent. This is where we place the Van der Laan＇s thoughts： he considers that art completes nature and he builds his theoretical discourse on it, trying to better understand many aspects of architecture. From a conceptual point of view, we find in his works sense of timelessness, universality, special attention on the ＇locus＇ and a strict sense of proportions and use of materials according to nature. Could these concepts complement our current sustainable architecture？ How did Laan apply the current codes of ecology in his architecture？ His work may help us to get a theoretical interpretation of nature and not only physical. This paper develops this idea through the comparison of thoughts and works of Laan with the current technical approach to ＇sustainable＇ architecture.

关键词： Nature Architecture Van-der-Laan Ecology Ethics Environment

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Mitochondrial Sulfide Detoxification Requires a Functional Isoform O-Acetylserine（thiol）lyase C in Arabidopsis thaliana

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Molecular Plant 2012年第6期5卷 1217-1226页

作者： Consolacien Alvarez Irene garcia luis C Romero Cecilia Gotor Instituto de Bioquimica Vegetal y Fotosintesis Consejo Superior de Investigaciones Cientificas y Universidad de Sevilla Avda. Am~rico Vespucio 49 41092Sevilla Spain

In non-cyanogenic species, the main source of cyanide derives from ethylene and camalexin biosyntheses. In mitochondria, cyanide is a potent inhibitor of the cytochrome c oxidase and is metabolized by the β-cyanoalanine synthase CYS-C1, catalyzing the conversion of cysteine and cyanide to hydrogen sulfide and β-cyanoalanine. The hydrogen sulfide released also inhibits the cytochrome c oxidase and needs to be detoxified by the O-acetylserine（thiol）lyase mitochondrial isoform, OAS-C, which catalyzes the incorporation of sulfide to O-acetylserine to produce cysteine, thus generating a cyclic pathway in the mitochondria. The loss of functional OAS-C isoforms causes phenotypic characteristics very similar to the loss of the CYS-C1 enzyme, showing defects in root hair formation. Genetic complementation with the OAS-Cgene rescues the impairment of root hair elongation, restoring the wild-type phenotype. The mitochondria compromise their capacity to properly detoxify cyanide and the resulting sulfide because the latter cannot re-assimilate into cysteine in the oas-c null mutant. Consequently, we observe an accumulation of sulfide and cyanide and of the alternative oxidase, which is unable to prevent the production of reactive oxygen species probably due to the accumulation of both toxic molecules. Our results allow us to suggest that the significance of OAS-C is related to its role in the proper sulfide and cyanide detoxification in mitochondria.

关键词： alternative oxidase Arabidopsis thaliana cysteine cyanide β-cyanoalanine synthase O-acetylserine(thiol)-lyase reactive oxygen species root hair sulfide.

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Comparative transcriptomics reveals hidden issues in the plant response to arthropod herbivores

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Journal of Integrative Plant Biology 2021年第2期63卷 312-326页

作者： M.Estrella Santamaria Alejandro garcia Ana Amaiz Irene Rosa-diaz Gara Romero-Hernandez Isabel diaz Manuel Martinez Centro de Biotecnologia y Genomica de Plantas Instituto Nacional de Investigacion y Tecnologia Agraria y AlimentariaUniversidad Politecnica de MadridMadridSpain Departamento de Biotecnologia-Biologia Vegetal Escuela Tecnica Superior de Ingenierfa AgronomicaAlimentaria y de BiosistemasUniversidad Politecnica de MadridMadridSpain

Plants experience different abiotic/biotic stresses,which trigger their molecular machinery to cope with them. Besides general mechanisms prompted by many stresses, specific mechanisms have been introduced to optimize the response to individual threats. However, these key mechanisms are difficult to identify. Here, we introduce an in-depth species-specific transcriptomic analysis and conduct an extensive meta-analysis of the responses to related species to gain more knowledge about plant responses. The spider mite Tetranychus urticae was used as the individual species, several arthropod herbivores as the related species for meta-analysis, and Arabidopsis thaliana plants as the common host. The analysis of the transcriptomic data showed typical common responses to herbivory, such as jasmonate signaling or glucosinolate biosynthesis. Also, a specific set of genes likely involved in the particularities of the Arabidopsis-spider mite interaction was discovered. The new findings have determined a prominent role in this interaction of the jasmonateinduced pathways leading to the biosynthesis of anthocyanins and tocopherols. Therefore, tandem individual/general transcriptomic profiling has been revealed as an effective method to identify novel relevant processes and specificities in the plant response to environmental stresses.

关键词： Arabidopsis thaliana arthropod herbivore comparative transcriptomics plant defense Tetranychus urticae

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Modulation of immunity and inflammatory gene expression in the gut, in inflammatory diseases of the gut and in the liver by probiotics

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World Journal of Gastroenterology 2014年第42期20卷 15632-15649页

作者： Julio Plaza-diaz Carolina Gomez-Llorente luis Fontana Angel Gil Department of Biochemistry and Molecular Biology Ⅱ School of Pharmacy and Institute of Nutrition and Food Technology "Jose Mataix" Biomedical Research Center University of Granada

The potential for the positive manipulation of the gut microbiome through the introduction of beneficial microbes, as also known as probiotics, is currently an active area of investigation. The FAO/WHO define probiotics as live microorganisms that confer a health benefit to the host when administered in adequate amounts. However, dead bacteria and bacterial molecular components may also exhibit probiotic properties. The results of clinical studies have demonstrated the clinical potential of probiotics in many pathologies, such as allergic diseases, diarrhea, inflammatory bowel disease and viral infection. Several mechanisms have been proposed to explain the beneficial effects of probiotics, most of which involve gene expression regulation in specific tissues, particularly the intestine and liver. Therefore, the modulation of gene expression mediated by probiotics is an important issue that warrants further investigation. In the present paper, we performed a systematic review of the probiotic-mediated modulation of gene expression that is associated with the immune system and inflammation. Between January 1990 to February 2014, PubMed was searched for articles that were published in English using the MeSH terms “probiotics' and 'gene expression' combined with “intestines', 'liver', 'enterocytes', 'antigen-presenting cells', 'dendritic cells', 'immune system', and 'inflammation'. Two hundred and five original articles matching these criteria were initially selected, although only those articles that included specific gene expression results (77) were later considered for this review and separated into three major topics: the regulation of immunity and inflammatory gene expression in the gut, in inflammatory diseases of the gut and in the liver. Particular strains of Bifidobacteria, Lactobacilli, Escherichia coli, Propionibacterium, Bacillus and Saccharomyces influence the gene expression of mucins, Toll-like receptors, caspases, nuclear factor-κ

关键词： Gene expression Immunity Immunotolerance Inflammation Microbiota Probiotics Gut Liver

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