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High-throughput Phenotyping and Genomic Selection:The Frontiers of Crop Breeding Converge

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Journal of Integrative Plant Biology 2012年第5期54卷 312-320页

作者： Lloren cabrera-Bosquet jos Crossa Jarislav von Zitzewitz María Dolors Serret jos Luis Araus French National Institute for Agricultural Research (INRA UMR759)Ecophysiology Laboratory of Plants under Environmental StressMontpellier F-34060France International Maize and Wheat Improvement Center (CIMMYT) El BatnTexcoco CP 56130Mexico National Research Program on Rainfed Crops National Institute for Agricultural ResearchEst.Exp.La EstanzuelaColonia 70000Uruguay Unit of Plant Physiology Faculty of BiologyUniversity of BarcelonaAv.Diagonal643Barcelona 08028Spain

Genomic selection （GS） and high-throughput phenotyping have recently been captivating the interest of the crop breeding com- munity from both the public and private sectors world-wide. Both approaches promise to revolutionize the prediction of complex traits, including growth, yield and adaptation to stress. Whereas high-throughput phenotyping may help to improve understanding of crop physiology, most powerful techniques for high-throughput field phenotyping are empirical rather than analytical and compa- rable to genomic selection. Despite the fact that the two method- ological approaches represent the extremes of what is understood as the breeding process （phenotype versus genome）, they both consider the targeted traits （e.g. grain yield, growth, phenology, plant adaptation to stress） as a black box instead of dissectingthem as a set of secondary traits （i.e. physiological） putatively related to the target trait. Both GS and high-throughput phenotyping have in common their empirical approach enabling breeders to use genome profile or phenotype without understanding the underlying biology. This short review discusses the main aspects of both approaches and focuses on the case of genomic selection of maize flowering traits and near-infrared spectroscopy （NIRS） and plant spectral reflectance as high-throughput field phenotyping methods for complex traits such as crop growth and yield.

关键词： Genomic selection high-throughput phenotyping NIRS quantitative traits SNPs.

Pyrenetetraone-based covalent organic framework as an effective electrocatalyst for oxygen reduction reaction

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Nano Research 2022年第5期15卷 3907-3912页

作者： Paloma Garcia-Arroyo Emiliano Martinez-Perinan Jorge J.cabrera-Trujillo Elena Salagre Enrique G.Michel jose I.Martinez Encarnacion Lorenzo jose L.Segura Departamento de Quimica Organica I Facultad de CC.QuimicasUniversidad Complutense de Madrid28040 MadridSpain Departamento de Quimica Analitica y Analisis Instrumental Facultad de CienciasUniversidad Autónoma de Madrid28049 MadridSpain Departamento de Fisica de la Materia Condensada Universidad Autónoma de Madrid28049 MadridSpain Condensed Matter Physics Center(IFIMAC) Universidad Autónoma de Madrid28049 MadridSpain Departamento de Nanoestructuras SuperficiesRecubrimientos y Astrofisica MolecularInstituto de Ciencia de Materiales de Madrid(ICMMCSIC)28049 MadridSpain Instituto Madrileno de Estudios Avanzados en Nanociencia(IMDEA-Nanociencia) 28049 MadridSpain Institute for Advanced Research in Chemical Sciences(IAdChem) Universidad Autonoma de Madrid28049 MadridSpain

A novel porous and crystalline two-dimensional(2D)electrochemically active covalent organic framework(COF)based on ortho-quinone units has been prepared as an innovative approach towards the development of organic cathode materials with multiple redox sites as an efficient electrocatalyst for the oxygen reduction reaction(ORR).In contrast with most of the previously reported COFs as electrocatalysts for the ORR,the electrocatalytic application of this material towards ORR has been investigated without adding any metal or conductive supporting material and avoiding any additional carbonization ***,the electrochemical properties of the COF material have been compared with two analogue amorphous frameworks with similar chemical composition,which points out the important role of the enhanced crystallinity and porosity of the COF network in its superior performance as an electrocatalyst towards ORR.

关键词： electrocatalysis oxygen reduction reaction metal free pyrenetetraone covalent organic framework

Fe-dependent cellular alterations of oxidative balance in aquatic *** be ferroptosis involved?

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BIOCELL 2023年第5期47卷 1177-1189页

作者： PAULA MARIELA GONZÁLEZ JOAQUIN cabrera SUSANA PUNTARULO Fisicoquímica Facultad de Farmacia y BioquímicaUniversidad de Buenos AiresBuenos AiresC1113 AADArgentina Instituto de Bioquímica y Medicina Molecular(IBIMOL) CONICET-Universidad de Buenos AiresBuenos AiresC1113 AADArgentina

The purpose of this review is to briefly summarize the central role of iron(Fe)in terms of cellular alterations of the oxidative/protective balance with special emphasis on its possible involvement in ferroptosis-dependent disruption in aquatic *** ferroptotic cells or tissues,the intracellular Fe level increases;meanwhile the treatment with Fe chelators limits *** algae can assimilate Fe from the environment through several mechanisms,and aquatic animals incorporate dissolved Fe and Fe bound to both inorganic particles and organic *** central role of lipid peroxidation mediating ferroptosis was demonstrated in some algae where both low and high Fe concentrations could induce oxidative stress and programmed cell *** animals have high levels of polyunsaturated fatty acids and numerous studies have analyzed Fe effects on the lipidic fraction which could be related to *** ferroptosis reaction can be regulated through the antioxidant defense system,in combination with the protein degradation structure,metabolism,and gene *** depletion of nonenzymatic antioxidants like reduced glutathione(GSH)in animals,and the reduction of both GSH and ascorbate in photosynthetic organisms,are characteristic features of ***,ferroptosis can be prevented if Fe chelators,certain antioxidants,and specifically regulating genes are ***,the global scenario for the Fe role as a toxic component in biological systems seems to be even more complicated than it was previously *** more research on this subject is needed to improve the life span and survival of aquatic organisms after exposure to natural and anthropogenic adverse conditions.

关键词： Glutathione Labile Fe pool Lipid peroxidation Oxidative stress

N-terminally truncated Aβ4-x proteoforms and their relevance for Alzheimer’s pathophysiology

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Translational Neurodegeneration 2022年第1期11卷 496-513页

作者： Agueda Rostagno Erwin cabrera Tammaryn Lashley Jorge Ghiso Departments of Pathology New York University School of MedicineNew YorkNY 10016USA The Queen Square Brain Bank for Neurological Disorders Department of Clinical and Movement NeurosciencesUCL Queen Square Institute of NeurologyLondon WC1N 3BGUK Department of Neurodegenerative Disease UCL Queen Square Institute of NeurologyLondon WC1N 3BGUK Departments of Psychiatry New York University School of Medicine550 First AvenueNew YorkNY 10016USA Current affiliation:Farmingdale State College State University of New YorkFarmingdaleNY 11735USA.

Background:The molecular heterogeneity of Alzheimer’s amyloid-β(Aβ)deposits extends well beyond the clas-sic Aβ1-40/Aβ1-42 dichotomy,substantially expanded by multiple post-translational modifications that increase the proteome *** truncated fragments consistently populate the brain Aβpeptidome,and their homeo-static regulation and potential contribution to disease pathogenesis are largely unknown.Aβ4-x peptides have been reported as major components of plaque cores and the limited studies available indicate their relative abundance in Alzheimer’s disease(AD).Methods:Immunohistochemistry was used to assess the topographic distribution of Aβ4-x species in well-char-acterized AD cases using custom-generated monoclonal antibody 18H6-specific for Aβ4-x species and blind for full-length Aβ1-40/Aβ1-42-in conjunction with thioflavin-S and antibodies recognizing Aβx-40 and Aβx-42 *** dichroism,thioflavin-T binding,and electron microscopy evaluated the biophysical and aggregation/oligomerization properties of full-length and truncated synthetic homologues,whereas stereotaxic intracerebral injections of monomeric and oligomeric radiolabeled homologues in wild-type mice were used to evaluate their brain clearance ***:All types of amyloid deposits contained the probed Aβepitopes,albeit expressed in different proportions.Aβ4-x species showed preferential localization within thioflavin-S-positive cerebral amyloid angiopathy and cored plaques,strongly suggesting poor clearance characteristics and consistent with the reduced solubility and enhanced oligomerization of their synthetic *** vivo clearance studies demonstrated a fast brain efflux of N-termi-nally truncated and full-length monomeric forms whereas their oligomeric counterparts-particularly of Aβ4-40 and Aβ4-42-consistently exhibited enhanced brain ***:The persistence of aggregation-prone Aβ4-x proteoforms likely contributes to the process of

关键词： Alzheimer’s disease Amyloid-βtruncated species Peptide oligomerization Brain clearance Brain efflux Stereotaxic intracerebral injection

Atypical Cutaneous Leishmaniasis by Leishmania Mexicana: A Case Report with Dermoscopic, Histopathological and Molecular Study

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Advances in Microbiology 2022年第11期12卷 597-602页

作者： Marina Romero-Navarrete Lucio Vera-cabrera Roberto Arenas María Elisa vega-Memije Aureliano Castillo-Solana General Hospital of Acapulco Secretary of Health Guerrero Mexico Dr. josé Eleuterio Gonzalez University Hospital University of Nuevo Leon Monterrey Mexico Dr. Manuel Gea Gonzalez General Hospital Mexico City Mexico

Cutaneous leishmaniasis is a neglected tropical skin endemic disease, with worldwide distribution. By 2020 in the Americas, Mexico was in 12th place with 11 states reporting new cases. Molecular biology with different targets for diagnosis and species identification has been used for decades, also dermoscopy, a non-invasive diagnostic tool has shown its usefulness. We present the first case of cutaneous leishmaniasis in non-endemic place (Guerrero, Mexico) identifying Leishmania mexicana with molecular biology, and treated with itraconazole.

关键词： Atypical Cutaneous Leishmaniasis Neglected Tropical Skin Diseases Lutzomyia Leishmania mexicana Itraconazole

A computer vision system for early detection of anthracnose in sugar mango(Mangifera indica)based on UV-A illumination

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Information Processing in Agriculture 2023年第2期10卷 204-215页

作者： Leonardo Ramırez Alberto Carlos Eduardo cabrera Ardila Flavio Augusto Prieto Ortiz Facultad de Ingenierı´a Universidad Nacional de ColombiaBogota´D.C.111321Colombia

The present work describes the development of a computer vision system for the early detection of anthracnose in sugar mango based on Ultraviolet A illumination(UV-A).Anthracnose,a disease caused by the fungus Colletotrichum sp,is commonly found in the fruit of sugar mango(Mangifera indica).It manifests as surface defects including black spots and is responsible for reducing the quality of the ***,it decreases its commercial *** more detail,this study poses a system that begins with image acquisition under white and ultraviolet ***,it proposes to analyze the Red,Green and Blue color information(R,G,B)of the pixels under two types of illumination,using four different methods:RGB-threshold,RGB-Linear Discriminant Analysis(RGBLDA),UV-LDA,and *** analysis produces an early semantic segmentation of healthy and diseased areas of the mango *** results showed that the combination of the linear discriminant analysis(LDA)and UV-A light(called UV-LDA method)in sugar mango images allows early detection of ***,this method achieves the identification of the disease one day earlier than by an expert with respect to the scale of anthracnose severity implemented in this work.

关键词： Sugar mango Anthracnose LDA UV-A light Grading Image processing

Six forests in one:Tree species diversity in the Bosque Protector Chongón Colonche,a lowland mountain range in coastal Ecuadorian

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Forest Ecosystems 2022年第6期9卷 725-733页

作者： Oswaldo Jadan David ADonoso Edwin Ponce-Ramírez Franz Pucha-Cofrep Omar cabrera Facultad de Ciencias Agropecuarias Universidad de Cuenca12 de Octubre y Diego de TapiaCuenca010107Ecuador Programa de Doctorado en Conservacion de Recursos Naturales Escuela Internacional de DoctoradoUniversidad Rey Juan CarlosMostolesMadridES-28933Spain Departamento de Biología Escuela Politecnica NacionalLadron de Guevara E11⋅253Quito170525Ecuador Geoforest S.A 12 de febrero y Av.Franklin VegaMacas140150Ecuador Grupo de Investigacion Hidrología y Climatología Universidad Tecnica Particular de LojaSan Cayetano Alto S/NLoja110101Ecuador Brandenburg University of Technology(BTU)Cottbus-Senftenberg 03044CottbusGermany Departamento de Ciencias Biologicas y Agropecuarias Universidad Tecnica Particular de LojaSan Cayetano Alto S/NLoja110101Ecuador

Tropical mountain ranges shape the structure of tree communities and promote highly diverse natural ***“Bosque Protector Chong on-Colonche”(BPCC),an 86,000-ha mountain formation situated on the coast of Ecuador,is biogeographically important for the region by connecting floristic elements of the wet Choco and the dry Tumbesian *** understanding of the factors that model tree and palm diversity and distribution in this mountain range are *** measured and identified all trees and palms(DBH≥10 cm)in 289 plots of0.2 ha,distributed throughout *** used generalized linear models to explain the relationship between forest diversity and structure and climatic variables(temperature,rain,aridity),and *** then used cluster and non-metric multidimensional scale(NMDS)analyses to search for distinct forest communities within the *** partition(varpart)was used to determine which predictor variables best explained these distinct forest communities.A species indicator analysis identified the species most likely to define these distinct forest ***,we carried out a niche modeling approach to identify the potential distribution of these forest communities within *** total,we identified 220 tree and palm species in our *** average number of species per plot was 17.8±5.8,ranging from 3 to 40 *** methods sorted the 289study plots into six different forest communities,three communities in the dry forest and three in the semi-humid Garúa *** and temperature,but not altitude or aridity,explained floristic *** results emphasize the high but little cataloged diversity in the lowland mountain rainforests of coastal Ecuador.

关键词： Chongón-Colonche Climatic variables Dry forest Forest communities Garúa forest

Precision silviculture:use of UAVs and comparison of deep learning models for the identification and segmentation of tree crowns in pine crops

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International Journal of Digital Earth 2022年第1期15卷 2223-2238页

作者： Manuel Ignacio Perez Bruno Karelovic Roberto Molina Rodrigo Saavedra Pierluigi Cerulo Guillermo cabrera Department of Computer Sciences Universidad de Concepcion Biblioteca CentralConcepcionChile Celulosa Arauco y Constitucion SA I&DSantiagoChile

The monitoring of trees is crucial for the management of large areas of forest cultivations,but this process may be ***,remotely sensed data offers a solution to automate this *** this work,we used two neural network methods named You Only Look Once(YOLO)and Mask R-CNN to overcome the challenging tasks of counting,detecting,and segmenting high dimensional Red–Green–Blue(RGB)images taken from unmanned aerial vehicles(UAVs).We present a processing framework,which is suitable to generate accurate predictions for the aforementioned tasks using a reasonable amount of labeled *** compared our method using forest stands of different ages and *** counting,YOLO overestimates 8.5%of the detected trees on average,whereas Mask R-CNN overestimates a 4.7%of the *** the detection task,YOLO obtains a precision of 0.72 and a recall of 0.68 on average,while Mask R-CNN obtains a precision of 0.82 and a recall of *** segmentation,YOLO overestimates a 13.5%of the predicted area on average,whereas Mask R-CNN overestimates a 9.2%.The proposed methods present a cost-effective solution for forest monitoring using RGB images and have been successfully used to monitor∼146,500 acres of pine cultivations.

关键词： Artificial intelligence tree identification forestry remote sensing

SDHA: a key player in T cell-mediated intestinal disease severity

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Cellular & Molecular Immunology 2022年第2期19卷 139-141页

作者： josé M.Izquierdo Centro de Biología Molecular Severo Ochoa.Consejo Superior de Investigaciones Científicas Universidad Autónoma de Madrid(CSIC/UAM)C/Nicolás Cabrera 1Campus de Cantoblanco28049MadridSpain

In their recent article in Nature Immunology,Fujiwara et *** reduced mitochondrial respiration and increased succinate levels in intestinal epithelial cells(IECs)from several distinct models of T cell-mediated *** observations point to a specific link between alterations in the mitochondrial complex II component SDHA and the severity of T cell-mediated intestinal diseases and suggest that SDHA dysfunction could be a diagnostic and/or prognostic biomarker in T cell-mediated immunopathology.

关键词： severity alterations mediated