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DNA recovery and analysis from skeletal material in modern forensic contexts

Forensic Sciences Research 2019年第1期4卷 51-59页

作者： Krista E.Latham jessica j.miller Biology Department Human Identification CenterUniversity of IndianapolisIndianapolisINUSA

The generation of a DNA profile from skeletal remains is an important part of the identifica-tion process in both mass disaster and unidentified person cases. Since bones and teeth are often the only biological materials remaining after exposure to environmental conditions, intense heat, certain traumatic events and in cases where a significant amount of time has passed since the death of the individual, the ability to purify large quantities of informative DNA from these hard tissues would be beneficial. Since sampling the hard tissues for gen-etic analysis is a destructive process, it is important to understand those environmental and intrinsic factors that contribute to DNA preservation. This will serve as a brief introduction to these topics, since skeletal sampling strategies and molecular taphonomy have been dis-cussed in depth elsewhere. Additionally advances in skeletal DNA extraction and analysis will be discussed. Currently there is great variation in the DNA isolation methods used by laboratories to purify DNA from the hard tissues;however, a standardized set of short tan-dem repeat (STR) loci is analyzed by many US laboratories to allow for comparisons across samples and jurisdictions. Recent advances have allowed for the generation of DNA profiles from smaller quantities of template DNA and have expanded the number of loci analyzed for greater discriminatory power and predictions regarding the geographic ancestry and phenotype of the individual. Finally, utilizing databases and expanding the number of com-parison samples will be discussed in light of their role in the identification process.

关键词： Forensic sciences forensic anthropology forensic genetics individual identification molecular taphonomy skeletal DNA Extraction DNA profiles DNA databases

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Restoring the gut microbiome for the treatment of inflammatory bowel diseases

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World journal of Gastroenterology 2014年第13期20卷 3468-3474页

作者： jessica R Allegretti Matthew j Hamilton Division of Gastroenterology Brigham and Women’s Hospital and Harvard Medical SchoolBostonMA 02115United States

Fecal microbiota transplantation (FMT) is considered to be a highly successful therapy for recurrent and refractory Clostridium difficile infection (CDI) based on recent clinical trials. The pathogenesis of inflammatory bowel diseases (IBD) is thought to be due in part to perturbations in the gut microflora that disrupt homeostasis. FMT restores essential components of the microflora which could reverse the inflammatory processes observed in IBD. Case reports and series for the treatment of IBD by FMT have shown promise with regards to treatment success and safety despite the limitations of the reporting. Future studies will determine the optimal delivery and preparation of stool as well as the conditions under which the recipient will derive maximal benefit. The long term consequences of FMT with regards to infection, cancer, auto-immune, and metabolic diseases are not known and will require continued regulation and study. Despite these limitations, FMT may be beneficial for the treatment of ulcerative colitis and Crohn’s disease, particularly those with concurrent CDI or with pouchitis.

关键词： Crohn’ s, Ulcerative colitis, Microbiota, Fecal transplantation, Dysbiosis, Pouchitis, Clostridium difficile, Probiotic

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Analysis of PFAAs in American alligators part 2： Potential dietary exposure of South Carolina hunters from recreationally harvested alligator meat

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journal of Environmental Sciences 2017年第11期29卷 31-38页

作者： jessica j.Tipton Louis j.Guillette jr Susan Lovelace Benjamin B.Parrott Thomas R.Rainwater jessica L.Reiner College of Charleston Charleston SC 29724 USA Medical University of South Carolina Department of Obstetrics and Gynecology Charleston SC 29425 USA University of Georgia Odum School of Ecology Savannah River Ecology Laboratory Jackson SC 29831 USA Torn Yawkey Wildlife Center & Belle W. Baruch Institute of Coastal Ecology and Forest Science Clemson University P.O. Box 59(5 Georgetown SC 29442 USA National Institute of Standards and Technology Chemical Sciences Division Hollings Marine Laboratory Charleston SC 29412 USA

Exposure to perfluorinated alkyl acids（PFAAs） has been linked to many harmful health effects including reproductive disorders, developmental delays, and altered liver and kidney function. Most human exposure to environmental contaminants, including PFAAs,occurs through consumption of contaminated food or drinking water. This study uses PFAA data from meat samples collected from recreationally harvested American alligators（Alligator mississippiensis） in South Carolina to assess potential dietary exposure of hunters and their families to PFAAs. Consumption patterns were investigated using intercept surveys of 23 hunters at a wild game meat processor. An exposure scenario using the average consumption frequency, portion size, and median perfluorooctane sulfonic acid（PFOS） concentration in alligator meat from all hunt units found the daily dietary exposure to be 2.11 ng/kg body weight per day for an adult human. Dietary PFOS exposure scenarios based on location of harvest suggested the highest daily exposure occurs with alligator meat from the Middle Coastal hunt unit in South Carolina. Although no samples were found to exceed the recommended threshold for no consumption of PFOS found in Minnesota state guidelines, exposure to a mixture of PFAAs found in alligator meat and site-specific exposures based on harvest location should be considered in determining an appropriate guideline for vulnerable populations potentially exposed to PFAAs through consumption of wild alligator meat.

关键词： Public hunt American alligator Dietary exposure PFOS Consumption advisory Contaminant consumption

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Analysis of PFAAs in American alligators part 1： Concentrations in alligators harvested for consumption during South Carolina public hunts

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journal of Environmental Sciences 2017年第11期29卷 24-30页

作者： jessica j.Tipton Louis j.Guillette jr Susan Lovelace Benjamin B.Parrott Thomas R.Rainwater jessica L.Reiner College of Charleston Charleston SC 29424 USA Medical University of South Carolina Department of Obstetrics and Gynecology Charleston SC 29425 USA University of Georgia Odum School of Ecology Savannah River Ecology Laboratory Jackson SC 29831 USA Tom Yawkey Wildlife Center & Belle W. Baruch Institute of Coastal Ecology and Forest Science Clemson University P.O. Box 596 Georgetown SC 29442 USA National Institute of Standards and Technology Chemical Sciences Division Hollings Marine Laboratory Charleston SC 29412 USA

Environmental contamination resulting from the production or release of harmful chemicals can lead to negative consequences for wildlife and human health. Perfluorinated alkyl acids（PFAAs） were historically produced as protective coatings for many household items and currently persist in the environment, wildlife, and humans. PFAAs have been linked to immune suppression, endocrine disruption, and developmental toxicity in wildlife and laboratory studies. This study examines the American alligator, Alligator mississippiensis,as an important indicator of ecosystem contamination and a potential pathway for PFAA exposure in humans. Alligator meat harvested in the 2015 South Carolina（SC） public hunt season and prepared for human consumption was collected and analyzed for PFAAs to determine meat concentrations and relationships with animal body size（total length）, sex, and location of harvest. Of the 15 PFAAs analyzed, perfluorooctane sulfonate（PFOS） was found in all alligator meat samples and at the highest concentrations（median 6.73 ng/g）. No relationship was found between PFAA concentrations and total length or *** of one or all compounds varied significantly across sampling locations, with alligators harvested in the Middle Coastal hunt unit having the highest PFOS concentrations（median 16.0 ng/g; p = 0.0001）. Alligators harvested specifically from Berkley County, SC（located in the Middle Coastal hunt unit） had the highest PFOS concentrations and the greatest number of PFAAs detected（p 〈 0.0001）. The site-specific nature of PFAA concentrations in alligator meat observed in this study suggests a source of PFAA contamination in Berkley County, SC.

关键词： Perfluorinated alkyl acids American alligators South Carolina Perfluorooctane sulfonate(PFOS) Dietary exposure

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Coordination chemistry of surface-associated ligands for solid-liquid adsorption of rare-earth elements

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journal of Rare Earths 2023年第1期41卷 1-18页

作者： jessica L.Hovey Timothy M.Dittrich Matthew j.Allen Department of Chemistry Wayne State University5101 Cass AvenueDetroitMI48202USA Department of Civil and Environmental Engineering 5050 Anthony Wayne DriveWayne State UniversityDetroitMIl48202USA

General guidelines for the design of ligands for the enrichment of rare-earth elements by solid-liquid adsorption are described using coordination *** properties of ligands include selectivity of metal ions based on adjustment of donor atom polarizability,denticity,and the pKarange of the binding *** selectivity of solid-phase materials for the enrichment of rare-earth ions by the ligand design guidelines is outlined,with special consideration of additional variable factors including steric hindrance,saturated binding sites,variability in speciation caused by the identity of counterions and ionic strength,and size-exclusivity in ligands stemming from differences in bite angle,preo rganization of ligands,or intraligand *** review analyzes some principles of selectivity of rare-earth elements with ligands organized by donor type from examples collected from reports published between 2009 and 2021.

关键词： Chelating ligand Coordination chemistry Solid-phase material Rare-earth element Separation Solid-liquid extraction

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Erratum regarding missing ethics approval and consent to participate statements in previously published articles

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Bioactive Materials 2024年第10期40卷 I0010-I0015页

作者： jessica Wang

The publisher would like to draw the reader’s attention to the following *** approval and consent to participate statements were not included in the published version of the following articles that appeared in previous issues of Bioactive *** authors were contacted after publication to request ethics approval and consent to participate statements for the following *** appropriate ethics approval and consent to participate statements,provided by the authors,are included below.

关键词： approval consent statements

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Glucocorticoid receptor gene haplotype structure and steroid therapy outcome in IBD patients

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World journal of Gastroenterology 2010年第31期16卷 3888-3896页

作者： jessica Mwinyi Christa Wenger jyrki j Eloranta Gerd A Kullak-Ublick Division of Clinical Pharmacology and Toxicol-ogy University Hospital Zurich

AIM: To study whether the glucocorticoid receptor (GR/ NR3C1) gene haplotypes influence the steroid therapy outcome in inflammatory bowel disease (IBD). METHODS: We sequenced all coding exons and flanking intronic sequences of the NR3C1 gene in 181 IBD patients, determined the single nucleotide polymorphisms, and predicted the NR3C1 haplotypes. Furthermore, we investigated whether certain NR3C1 haplotypes are significantly associated with steroid therapy outcomes. RESULTS: We detected 13 NR3C1 variants, which led to the formation of 17 different haplotypes with a certainty of > 95% in 173 individuals. The three most commonly occurring haplotypes were included in the association analysis of the influence of haplotype on steroid therapy outcome or IBD activity. None of the NR3C1 haplotypes showed statistically signifi cant association with glucocorticoid therapy success. CONCLUSION: NR3C1 haplotypes are not related to steroid therapy outcome.

关键词： Inflammatory bowel disease Steroid therapy Glucocorticoid receptor Pharmacogenetics Haplotype analysis

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Application of DInSAR for short period monitoring of initial subsidence due to longwall mining in the mountain west United States

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International journal of Mining Science and Technology 2020年第1期30卷 33-37页

作者： jessica M.Wempen Department of Mining Engineering University of UtahSalt Lake City 84112USA

Differential Interferometric Synthetic Aperture Radar(DInSAR),a satellite-based remote sensing technique,has application for monitoring subsidence with high resolution over short *** uses radar images to measure centimeter-level surface *** the images,ground resolution can be relatively high,with each data point(pixel)representing the average displacement over an area of several square *** image data are acquired regularly which allows subsidence to be monitored sequentially over short periods;imaging periods typically range from weeks to *** subsidence over short periods with high spatial resolution has potential to provide insight into the dynamics of subsidence and into relationships between mine advance and *** this study,for three longwall mines in the western United States,initial subsidence occurring at the start of longwall advance is quantified over short periods(12–72 days).C-band interferometric wide swath Synthetic Aperture Radar(SAR)images from the Sentinel satellites are used to quantify the ***,the data show initial development of subsidence,expansion of the subsidence trough,and the advance of subsidence in the direction of mining.

关键词： Longwall mining Interferometry Subsidence

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Growth and differentiation of human induced pluripotent stem cell(hiPSC)-derived kidney organoids using fully synthetic peptide hydrogels

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Bioactive Materials 2023年第3期21卷 142-156页

作者： Niall j.Treacy Shane Clerkin jessica L.Davis Ciar´an Kennedy Aline F.miller Alberto Saiani jacek K.Wychowaniec Dermot F.Brougham john Crean Diabetes Complications Research Centre University College Dublin(UCD)Conway Institute of Biomolecular and Biomedical Research and BelfieldDublin 4Ireland UCD School of Biomolecular and Biomedical Science BelfieldDublin 4Ireland Department of Materials&Manchester Institute of Biotechnology(MIB) School of Natural SciencesFaculty of Science and EngineeringThe University of ManchesterUK UCD School of Chemistry University College DublinBelfieldDublin 4Ireland

Human induced pluripotent stem cell(hiPSC)-derived kidney organoids have prospective applications ranging from basic disease modelling to personalised ***,there remains a necessity to refine the bio-physical and biochemical parameters that govern kidney organoid *** within fully-controllable and physiologically relevant 3D growth environments will be critical to improving organoid reproducibility and ***,we matured hiPSC-derived kidney organoids within fully synthetic self-assembling peptide hydrogels(SAPHs)of variable stiffness(storage modulus,G′).The resulting organoids con-tained complex structures comparable to those differentiated within the animal-derived matrix,***-cell RNA sequencing(scRNA-seq)was then used to compare organoids matured within SAPHs to those grown within Matrigel or at the air-liquid interface.A total of 13,179 cells were analysed,revealing 14 distinct *** compositional analysis revealed a larger proportion of nephron cell types within Transwell-derived organoids,while SAPH-derived organoids were enriched for stromal-associated cell ***,dif-ferentiation within a higher G’SAPH generated podocytes with more mature gene expression ***-tionally,maturation within a 3D microenvironment significantly reduced the derivation of off-target cell types,which are a known limitation of current kidney organoid *** work demonstrates the utility of syn-thetic peptide-based hydrogels with a defined stiffness,as a minimally complex microenvironment for the selected differentiation of kidney organoids.

关键词： Human kidney organoids Fully synthetic matrices Self-assembling peptide hydrogels Single-cell RNA sequencing

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Contributions of neurotropic human herpesviruses herpes simplex virus 1 and human herpesvirus 6 to neurodegenerative disease pathology

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Neural Regeneration Research 2018年第2期13卷 211-221页

作者： jessica M.Hogestyn David j.Mock Margot Mayer-Proschel Department of Neuroscience University of Rochester Department of Biomedical Genetics University of Rochester

Human herpesviruses （HVs） have developed ingenious mechanisms that enable them to traverse the defenses of the central nervous system （CNS）. The ability of HVs to enter a state of latency, a defining char- acteristic of this viral family, allows them to persist in the human host indefinitely. As such, HVs represent the most frequently detected pathogens in the brain. Under constant immune pressure, these infections are largely asymptomatic in healthy hosts. However, many neurotropic HVs have been directly connected with CNS pathology in the context of other stressors and genetic risk factors. In this review, we discuss the potential mechanisms by which neurotropic HVs contribute to neurodegenerative disease （NDD） patholo- gy by highlighting two prominent members of the HV family, herpes simplex virus 1 （HSV-1） and human herpesvirus 6 （HHV-6）. We （i） introduce the infectious pathways and replicative cycles of HSV-1 and HHV-6 and then （ii） review the clinical evidence supporting associations between these viruses and the NDDs Alzheimer＇s disease （AD） and multiple sclerosis （MS）, respectively. We then （iii） highlight and dis- cuss potential mechanisms by which these viruses exert negative effects on neurons and glia. Finally, we （iv） discuss how these viruses could interact with other disease-modifying factors to contribute to the initiation and/or progression of NDDs.

关键词： herpes simplex virus 1 human herpesvirus 6 central nervous system neurodegeneration demyelination Alzheimer's disease multiple sclerosis viral latency viral reactivation

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