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Comparative Genomic Study of the Thioredoxin Family in Photosynthetic Organisms with Emphasis on Populus trichocarpa

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Molecular Plant 2009年第2期2卷 308-322页

作者： Kamel Chibani Gunnar Wingsle jean-pierre jacquot Eric Gelhaye Nicolas Rouhier UMR 1136 Nancy University-INRA Interactions Arbres Microorganismes IFR 110 GEEF Faculte des Sciences BP 239 54506 Vandoeuvre-les-Nancy Cedex France Department of Forest Genetics and Plant Physiology Swedish University of Agricultural Sciences Umea Plant Science Centre 90183 Umea Sweden

The recent genome sequencing of Populus trichocarpa and Vitis vinifera, two models of woody plants, of Sorghum bicolor, a model of monocot using C4 metabolism, and of the moss Physcomitrella patens, together with the availability of photosynthetic organism genomes allows performance of a comparative genomic study with organisms having different ways of life, reproduction modes, biological traits, and physiologies. Thioredoxins （Trxs） are small ubiq- uitous proteins involved in the reduction of disulfide bridges in a variety of target enzymes present in all sub-cellular compartments and involved in many biochemical reactions. The genes coding for these enzymes have been identified in these newly sequenced genomes and annotated. The gene content, organization and distribution were compared to other photosynthetic organisms, leading to a refined classification. This analysis revealed that higher plants and bryo- phytes have a more complex family compared to algae and cyanobacteria and to non-photosynthetic organisms, since poplar exhibits 49 genes coding for typical and atypical thioredoxins and thioredoxin reductases, namely one-third more than monocots such as Oryza sativa and S. bicolor. The higher number of Trxs in poplar is partially explained by gene duplication in the Trx m, h, and nucleoredoxin classes. Particular attention was paid to poplar genes with emphasis on Trx-like classes called Clot, thioredoxin-like, thioredoxins of the lilium type and nucleoredoxins, which were not described in depth in previous genomic studies.

关键词： Genomic oxidoreductase poplar redox regulation thioredoxins.

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Glutathione regulates the transfer of iron-sulfur cluster from monothiol and dithiol glutaredoxins to apo ferredoxin

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Protein & Cell 2012年第9期3卷 714-721页

作者： Lei Wang Bingjie Ouyang Yifei Li Yingang Feng jean-pierre jacquot Nicolas Rouhier Bin Xia Beijing Nuclear Magnetic Resonance Center Peking UniversityBeijing 100871China College of Chemistry and Molecular Engineering Peking UniversityBeijing 100871China School of Life Sciences Peking UniversityBeijing 100871China UMR 1136 IaM IFR 110Faculty of SciencesNancy UniversityVandoeuvre 54506France

Holo glutaredoxin(Grx)is a homo-dimer that bridges a[2Fe-2S]cluster with two glutathione(GSH)*** this study,both monothiol and dithiol holo Grxs are found capable of transferring their iron-sulfur(FeS)cluster to an apo ferredoxin(Fdx)through direct interaction,regardless of FeS cluster stability in holo *** ligand GSH molecules in holo Grxs are unstable and can be exchanged with free GSH,which inhibits the FeS cluster transfer from holo Grxs to apo *** phenomenon suggests a novel role of GSH in FeS cluster trafficking.

关键词： iron-sulfur cluster glutaredoxin glutathione ferredoxin CD NMR

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Monitoring absolute vertical land motions and absolute sea-level changes from GPS and tide gauges data over French Polynesia

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Geodesy and Geodynamics 2024年第1期15卷 13-26页

作者： Xianjie Li jean-pierre Barriot Bernard Ducarme Marania Hopuare Yidong Lou Geodesy Observatory of Tahiti University of French PolynesiaFaa'a 98702French Polynesia Catholic University of Louvain Georges Lemaître Centre for Earth and Climate Research(ELI)1348 Louvain-la-NeuveBelgium GNSS Research Center Wuhan UniversityWuhan 430079China State Key Laboratory of Information Engineering in Surveying Mapping and Remote SensingWuhan UniversityWuhan 430079China

In this study,we estimate the absolute vertical land motions at three tidal stations with collocated Global Navigation Satellite System(GNSS)receivers over French Polynesia during the period 2007-2020,and obtain,as ancillary results,estimates of the absolute changes in sea level at the same *** verify our processing approach to determining vertical motion,we first modeled vertical motion at the International GNSS Service(IGS)THTI station located in the capital island of Tahiti and compared our estimate with previous independent determinations,with a good *** obtained the following estimates for the vertical land motions at the tide gauges:Tubuai island,Austral Archipelago-0.92±0.17 mm/yr,Vairao village,Tahiti Iti:-0.49±0.39 mm/yr,Rikitea,Gambier Archipelago-0.43±0.17 mm/*** absolute variations of the sea level are:Tubuai island,Austral Archipelago 5.25±0.60 mm/yr,Vairao village,Tahiti Iti:3.62±0.52 mm/yr,Rikitea,Gambier Archipelago 1.52±0.23 mm/*** discuss these absolute values in light of the values obtained from altimetric measurements and other means in French Polynesia.

关键词： GPS Tide gauges Sea level changes Vertical land motion

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Monothiol Glutaredoxin-BolA Interactions： Redox Control of Arabidopsis thaliana BolA2 and SufE1

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Molecular Plant 2014年第1期7卷 187-205页

作者： Jeremy Couturier Hui-Chen Wu Tiphaine Dhalleine Henri Pegeot Damien Sudre Jose M. Gualberto jean-pierre jacquot Frederic Gaymard Florence Vignols Nicolas Rouhier Universite de Lorraine Interactions Arbres-Microorganismes UMR1136 F-54500 Vandoeuvre-les-Nancy France INRA Interactions Arbres-Microorganismes UMR1136 F-54280 Champenoux France CNRS & UMR186 Resistance des Plantes aux Bio-agresseurs Institut de Recherche pour le Developpement BP 64501 34394 Montpellier cedex 5 France Biochimie et Physiologie MolEculaire des Plantes CNRS/INRA/Universite Montpellier 2 SupAgro. Bat 7 2 place Viala 34060 Montpellier cedex 1 France Institut de Biologie Moleculaire des Plantes CNRS UPR2357 F-67084 Strasbourg France

A functional relationship between monothiol glutaredoxins and BolAs has been unraveled by genomic analyses and in several high-throughput studies. Phylogenetic analyses coupled to transient expression of green fluo- rescent protein （GFP） fusions indicated that, in addition to the sulfurtransferase SufE1, which contains a C-terminal BolA domain, three BolA isoforms exist in Arabidopsis thaliana, BolA1 being plastidial, BolA2 nucleo-cytoplasmic, and BolA4 dual-targeted to mitochondria and plastids. Binary yeast two-hybrid experiments demonstrated that all BolAs and SufE 1, via its BolA domain, can interact with all monothiol glutaredoxins. Most interactions between protein couples of the same subcellular compartment have been confirmed by bimolecular fluorescence complementation. In vitro experiments indicated that monothiol glutaredoxins could regulate the redox state of BolA2 and SufE1, both proteins possessing a single conserved reactive cysteine. Indeed, a glutathionylated form of SufE1 lost its capacity to activate the cysteine desuifurase, Nfs2, but it is reactivated by plastidial glutaredoxins. Besides, a monomeric glutathionyiated form and a dimeric disulfide-bridged form of BolA2 can be preferentially reduced by the nucleo-cytoplasmic GrxS17. These results indicate that the glutaredoxin-BolA interaction occurs in several subcellular compartments and suggest that a redox regulation mechanism, disconnected from their capacity to form iron-sulfur cluster-bridged heterodimers, may be physiologically relevant for BolA2 and SufE1.

关键词： BolA glutaredoxin interaction plants redox control.

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Re-evaluation of recent research on metabolic utilization of energy in poultry: Recommendations for a net energy system for broilers

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Animal Nutrition 2024年第1期16卷 62-72页

作者： jean Noblet Aye-Cho Tay-Zar Shu-Biao Wu Pairat Srichana pierre Cozannet pierre-Andre Geraert Mingan Choct INRAE Charoen Pokphand Foods Public Company Limited (CPF) School of Environmental and Rural Science University of New England Adisseo France S.A.S.

Different energy systems have been proposed for energy evaluation of feeds for domestic animals. The oldest and most commonly used systems take into account the fecal energy loss to obtain digestible energy(DE), and fecal, urinary and fermentation gases energy losses to calculate metabolizable energy(ME). In the case of ruminants and pigs, the net energy(NE) system, which takes into account the heat increment associated with the metabolic utilization of ME, has progressively replaced the DE and ME systems over the last 50 years. For poultry, apparent ME(AME) is used exclusively and NE is not yet used widely. The present paper considers some important methodological points for measuring NE in poultry feeds and summarizes the available knowledge on NE systems for poultry. NE prediction equations based on a common analysis of three recent studies representing a total of 50 complete and balanced diets fed to broilers are proposed; these equations including the AME content and easily available chemical indicators have been validated on another set of 30 diets. The equations are applicable to both ingredients and complete diets. They rely primarily on an accurate and reliable AME value which then represents the first limiting predictor of NE value. Our analysis indicates that NE would be a better predictor of broiler performance than AME and that the hierarchy between feeds is dependent on the energy system with a higher energy value for fat and a lower energy value for protein in an NE system. Practical considerations for implementing such an NE system from the commonly used AME or AMEn(AME adjusted for zero nitrogen balance) systems are presented. In conclusion, there is sufficient information to allow the implementation of the NE concept in order to improve the accuracy of feed formulation in poultry.

关键词： Poultry Feed evaluation Net energy Energy system

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Prediction of net energy of feeds for broiler chickens

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Animal Nutrition 2024年第1期16卷 241-250页

作者： Aye-Cho Tay-Zar Manoosak Wongphatcharachai Pairat Srichana pierre-André Geraert jean Noblet Charoen Pokphand Foods Public Company Limited(CPF) BangkokThailand Adisseo France S.A.S. AntonyFrance INRAE RennesFrance

Net energy(NE)enables the prediction of more accurate feed energy values by taking into account the heat increment which is approximately 25%of apparent metabolizable energy(AME)in ***,application of NE in poultry industry has not been practiced *** predict the NE values of broiler diets,23 diets were prepared by using 13 major ingredients(wheat,corn,paddy rice,broken rice,cassava pellets,full-fat soybean,soybean meal,canola meal,animal protein,rice bran,wheat bran,palm kernel meal and palm kernel oil).The diets were formulated in order to meet the birds'requirements and get a wide range of chemical compositions(on DM basis;33.6%to 55.3%for starch;20.8%to 28.4%for CP,2.7%to 10.6%for ether extract[EE]and 7.0%to 17.2%for NDF),with low correlations between these nutrients and low correlations between the inclusion levels of ingredients allowing for the calculation of robust prediction equations of energy values of diets or *** diets were fed to Ross 308 broilers raised in 12 open-circuit respiratory chambers from 18 to 23 d of age(4 birds per cage)and growth performance,diet AME content and heat production were measured,and dietary NE values were *** trial was conducted on a weekly basis with 12 diets measured each week(1per chamber),1 of the 23 diets(reference diet)being measured each *** diet was tested at least *** total,235 energy balance data values were available for the final *** performance,AME(15.3 MJ/kg DM on average)and AME/GE(79.4%on average)values were as *** NE/AME value averaged 76.6%and was negatively influenced by CP and NDF and positively by EE in connection with efficiencies of AME provided by CP,EE and starch for NE of 73%,87%and 81%,*** best prediction equation was:NE=(0.815×AME)—(0.026×CP)+(0.020×EE)—(0.024×NDF)with NE and AME as MJ/kg DM,and CP,EE and NDF as%of *** NE prediction equations from this study agree with other recently reported equation

关键词： Net energy Broiler Poultry Feed evaluation Energy system

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It’s not all in your feet: Improving penalty kick performance with humanavatar interaction and machine learning

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The Innovation 2024年第2期5卷 115-121页

作者： jean-Luc Bloechle Julien Audiffren Thibaut Le Naour Andrea Alli Dylan Simoni Gabriel Wüthrich jean-pierre Bresciani Control and Perception Laboratory University of FribourgBd Perolles 901700 FribourgSwitzerland Motion-up Le PrismePlace Albert Einstein56000 VannesFrance FC Basel 1893 Birsstrasse 320A4002 BaselSwitzerland

Penalty kicks are increasingly decisive in major international football ***,over 30%of shootout kicks are *** outcome of the kick often relies on the ability of the penalty taker to exploit anticipatory movements of the goalkeeper to redirect the kick toward the open side of the ***,this ability is difficult to train using classical *** used an augmented reality simulator displaying an holographic goalkeeper to test and train penalty kick performance with 13 young elite *** learning algorithms were used to optimize the learning rate by maintaining an optimal level of training *** training sessions of 20 kicks reduced the redirection threshold by 120 ms,which constituted a 28%reduction with respect to the baseline ***,redirection threshold reduction was observed for all trained players,and all things being equal,it corresponded to an estimated 35%improvement of the success rate.

关键词： kick penalty learning

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Liver surface depressions in the presence of diaphragmatic muscular bands on trans-illumination

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World Journal of Experimental Medicine 2024年第2期14卷 5-10页

作者： Shamir O Cawich Michael T Gardner Ramanand Shetty jean pierre Louboutin Zenica Dabichan Shaneeta Johnson Department of Surgery University of the West IndiesSt AugustineTrinidad and Tobago Section of Anatomy Department of Basic Medical SciencesUniversity of the West IndiesKingston KIN7Jamaica Department of Surgery Morehouse School of MedicineAtlantaGA 30310United States

Traditional descriptions of liver anatomy refer to a smooth,convex surface contacting the *** depressions are recognized anatomic *** are many theories to explain the cause of the *** discuss the theory that these are... 详细信息

关键词： Liver Anatomy Depressions Fissure Groove Sulcus Variant

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Editorial

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Molecular Plant 2009年第2期2卷 369-369页

作者： Bob B. Buchanan Karl-Josef Dietz Peter Geigenberger jean-pierre jacquot Peter Schürmann

It is a pleasure, indeed, to be part of this Special Redox Biology Issue of Molecular Plant--a journal yet to celebrate its second birthday. The harvest of papers is rich indeed： 17 research articles and four reviews covering a range of topics that will be divided and published in two separate issues of Molecular Plant--the current （Vol. 2, No. 2） and subsequent （Vol. 2, No. 3） issues.

关键词： PLANT growth PLANT development

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Application of novel constrained friction processing method to produce fine grained biomedical Mg-Zn-Ca alloy

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Journal of Magnesium and Alloys 2024年第2期12卷 516-529页

作者： Ting Chen Banglong Fu Junjun Shen Uceu F.H.R.Suhuddin Björn Wiese Yuanding Huang Min Wang Jorge F.dos Santos jean pierre Bergmann Benjamin Klusemann Solid State Materials Processing Institute of Material MechanicsHelmholtz-Zentrum HereonMax-Planck-Str.1Geesthacht 21502Germany Functional Magnesium Materials Institute of Metallic BiomaterialsHelmholtz-Zentrum HereonMax-Planck-Str.1Geesthacht 21502Germany Shanghai Key Laboratory of Materials Laser Processing and Modification Shanghai Jiao Tong UniversityDongchuan Road 800Shanghai 200240China Applied Materials and Manufacturing Energy and Environment DivisionPacific Northwest National LaboratoryPO Box 999RichlandWA 99352USA Production Technology Group Technisiche Universität IlmenauGustav-Kirchhoff-Platz 2Ilmenau 98693Germany Institute for Production Technology and Systems Leuphana University of LüneburgUniversitätsallee 1Lüneburg 21335Germany

In order to obtain Mg alloys with fine microstructures and high mechanical performances,a novel friction-based processing method,name as“constrained friction processing(CFP)”,was *** CFP,defect-free Mg-Zn-Ca rods with greatly refined grains and high mechanical properties were *** to the previous as-cast microstructure,the grain size was reduced from more than 1 mm to around 4μm within 3 s by a single process *** compressive yield strength was increased by 350%while the ultimate compressive strength by 53%.According to the established material flow behaviors by“tracer material”,the plastic material was transported by shear *** the base material to the rod,the material experienced three stages,*** by the tool,upward flow with additional tilt,followed by upward *** microstructural evolution was revealed by“stop-action”*** microstructural development at regions adjacent to the rod is mainly controlled by twinning,dynamic recrystallization(DRX)as well as particle stimulated nucleation,while that within the rod is related to DRX combined with grain growth.

关键词： Constrained friction processing Magnesium alloys Microstructure Mechanical properties Grain refinement Plastic deformation

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