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3D U-Net Segmentation Improves Root System Reconstruction from 3D MRI Images in Automated and Manual Virtual Reality Work Flows

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Plant Phenomics 2023年第3期5卷 598-611页

作者： Tobias Selzner jannis Horn Magdalena Landl Andreas Pohlmeier Dirk Helmrich Katrin Huber jan vanderborght Harry Vereecken Sven Behnke Andrea Schnepf Forschungszentrum Juelich GmbH Agrosphere(IBG-3)JuelichGermany Autonomous Intelligence Systems Group University of BonnBonnGermany Forschungszentrum Juelich GmbH Juelich Supercomputing CenterJuelichGermany

Magnetic resonance imaging(MRI)is used to image root systems grown in opaque ***,reconstruction of root system architecture(RSA)from 3-dimensional(3D)MRI images is *** resolution and poor contrast-to-noise ratios(CNRs)hinder automated ***,manual reconstruction is still widely ***,we evaluate a novel 2-step work flow for automated RSA *** the first step,a 3D U-Net segments MRI images into root and soil in *** the second step,an automated tracing algorithm reconstructs the root systems from the segmented *** evaluated the merits of both steps for an MRI dataset of 8 lupine root systems,by comparing the automated reconstructions to manual reconstructions of unaltered and segmented MRI images derived with a novel virtual reality *** found that the U-Net segmentation offers profound benefits in manual reconstruction:reconstruction speed was doubled(+97%)for images with low CNR and increased by 27%for images with high *** root lengths were increased by 20%and 3%,***,we propose to use U-Net segmentation as a principal image preprocessing step in manual work *** root length derived by the tracing algorithm was lower than in both manual reconstruction methods,but segmentation allowed automated processing of otherwise not readily usable MRI ***,model-based functional root traits revealed similar hydraulic behavior of automated and manual *** studies will aim to establish a hybrid work flow that utilizes automated reconstructions as scaffolds that can be manually corrected.

关键词： Root utilize otherwise

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Development and Validation of a Deep Learning Based Automated Minirhizotron Image Analysis Pipeline

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Plant Phenomics 2022年第1期4卷 247-260页

作者： Felix Maximilian Bauer Lena Lärm Shehan Morandage Guillaume Lobet jan vanderborght Harry Vereecken Andrea Schnepf Institute of Bio-and Geosciences Agrosphere(IBG-3)Forschungszentrum Jülich GmbH52425 JülichGermany Institute of Soil Science and Land Evaluation University of Hohenheim7055978 StuttgartGermany

Root systems of crops play a significant role in *** root system is essential for water and nutrient uptake,plant stability,symbiosis with microbes,and a good soil *** have shown to be effective to noninvasively inves... 详细信息

关键词： structure crops soil

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Comparison of smoothness-constrained and geostatistically based cross-borehole electrical resistivity tomography for characterization of solute tracer plumes

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Water Science and Engineering 2016年第4期9卷 274-286页

作者： Andreas Englert Andreas Kemna Jun-feng Zhu jan vanderborght Harry Vereecken Tian-Chyi J.Yeh Institute of Geology Mineralogy and GeophysicsRuhr University Bochum Department of Geophysics Steinmann InstituteUniversity of Bonn Kentucky Geological Survey University of Kentucky Agrosphere Institute for Bio- and Geosciences(IBG-3)Forschungszentrum Jlich GmbH Department of Resources Engineering National Cheng Kung University Department of Hydrology and Water Resources The University of Arizona

Experiments using electrical resistivity tomography(ERT) have shown promising results in reducing the uncertainty of solute plume characteristics related to estimates based on the analysis of local point measurements *** explore the similarities and differences between two cross-borehole ERT inversion approaches for characterizing salt tracer plumes,namely the classical smoothness-constrained inversion and a geostatistically based approach,we performed two-dimensional synthetic *** assumptions about the solute transport model and the electrical forward and inverse model allowed us to study the sensitivity of the ERT inversion approaches towards a variety of basic conditions,including the number of boreholes,measurement schemes,contrast between the plume and background electrical conductivity,use of a priori knowledge,and point *** results show that geostatistically based and smoothness-constrained inversions of electrical resistance data yield plume characteristics of similar quality,which can be further improved when point measurements are incorporated and advantageous measurement schemes are *** expected,an increased number of boreholes included in the ERT measurement layout can highly improve the quality of inferred plume characteristics,while in this case the benefits of point conditioning and advantageous measurement schemes *** ERT inversion approaches are similarly sensitive to the noise level of the data and the contrast between the solute plume and background electrical conductivity,and robust with regard to biased input parameters,such as mean concentration,variance,and correlation length of the *** sophisticated inversion schemes have recently become available,in which flow and transport as well as electrical forward models are coupled,these schemes effectively rely on a relatively simple geometrical parameterization of the hydrogeological ***,we believe that standard uncoupled ER

关键词： Electrical resistivity tomography Inversion technique Solute tracer plume Synthetic experiment Plume characteristics

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Liver transplantation and liver resection as alternative treatments for primary hepatobiliary and secondary liver tumors: Competitors or allies?

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Hepatobiliary & Pancreatic Diseases International 2024年第2期23卷 111-116页

作者： jan Lerut Institute for Experimental and Clinical Research(IREC) Universitécatholique Louvain(UCL)Avenue Hippocrate 561200 Woluwe Saint PierreBrusselsBelgium

Although Starzl designed in the 1960’s liver transplantation(LT)to treat unresectable primary and also secondary liver tumors,transplantation still occupies a(too)small place in the respective therapeutic algorithms[1].Due to the lack of(any)selection criteria,the concept of transplantation became rapidly challenged because of the prohibitively high incidence of tumor recurrence[1–3].

关键词： liver tumors Liver

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Potential of molecular chaperones for treating Alzheimer’s disease

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Neural Regeneration Research 2024年第11期19卷 2343-2344页

作者： Gefei Chen jan Johansson Department of Biosciences and Nutrition Karolinska InstitutetHuddingeSweden Department of Cell and Molecular Biology Uppsala UniversityUppsalaSweden

Alzheimer’s disease(AD)is the most prevalent form of dementia,i.e.,progressive memory loss and profound cognitive dysfunction,resulting in a considerable societal *** the neuropathological level,the brains of AD patients exhibit amyloid-β(Aβ)plaques,neurofibrillary tangles,and neuroinflammation(Sala Frigerio and De Strooper,2016).

关键词： Alzheimer inflammation Aβ

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Solid Bi_(2)O_(3)-derived nanostructured metallic bismuth with high formate selectivity for the electrocatalytic reduction of CO_(2)

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International Journal of Minerals,Metallurgy and Materials 2024年第4期31卷 803-811页

作者： Xiaoyan Wang Safeer jan Zhiyong Wang Xianbo Jin College of Chemistry and Molecular Sciences Hubei Key Laboratory of Electrochemical Power SourcesWuhan UniversityWuhan 430072China Engineering Research Center of Organosilicon Compounds&Materials Ministry of EducationWuhan 430072China

CO_(2) electrochemical reduction(CO_(2)ER)is an important research area for carbon ***,available catalysts for CO_(2) reduction are still characterized by limited stability and ***,metallic bismuth(Bi)has emerged as a promising catalyst for CO_(2) ***,we report the solid cathode electroreduction of commercial micronized Bi2O3as a straightforward approach for the preparation of nanostructured ***-1.1 V versus reversible hydrogen electrode in a KHCO3aqueous electrolyte,the resulting nanostructure Bi delivers a formate current density of~40 mA·cm^(-2) with a current efficiency of~86%,and the formate selectivity reaches97.6% at-0.78 *** nanosized Bi2O3as the precursor can further reduce the primary particle sizes of the resulting Bi,leading to a significantly increased formate selectivity at relatively low *** high catalytic activity of nanostructured Bi is attributable to the ultrafine and interconnected Bi nanoparticles in the nanoporous structure,which exposes abundant active sites for CO_(2) electrocatalytic reduction.

关键词： bismuth carbon dioxide electrocatalysis formate solid electroreduction

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Effects of acid deposition control in China:a review based on responses of subtropical forests

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Frontiers of Environmental Science & Engineering 2024年第6期18卷 115-126页

作者： Danni Xie Xiaodong Ge Lei Duan jan Mulder School of Land Engineering Chang’an UniversityXi’an 710064China State Key Laboratory of Environmental Simulation and Pollution Control School of EnvironmentTsinghua UniversityBeijing 100084China State Environmental Protection Key Laboratory of Sources and Control of Air Pollution Complex Beijing 100084China Faculty of Environmental Sciences and Natural Resource Management Norwegian University of Life SciencesBox 5003NO-1432ÅsNorway

For many decades,acid deposition used to pose a significant regional air pollution challenge in *** substantial emission control of anthropogenically derived sulfur and nitrogen containing gasses,both sulfur and nitrogen deposition,as well as the acid rain-affected area,have significantly decreased compared to their peak ***,particularly in the humid subtropics,are sensitive to acid deposition,as evidenced by soil acidification,sulfate and nitrate leaching in stream water,and elevated soil nitrous oxide *** in the total deposition of sulfur and nitrogen,caused a significant decline in sulfate and nitrate leaching from subtropical forest and subsequently in sulfate and nitrate concentrations in stream water,although there was about a 5-year *** delay may be attributed to the desorption of accumulated sulfate and continued elevated mineralization of accumulated nitrogen *** of nitrous oxide,a potent greenhouse gas,also declined in nitrogen-saturated subtropical forest soils,as soil water nitrate concentration ***,subtropical forests in China suffering from elevated acid deposition have begun to ***,the current levels of sulfur and nitrogen deposition continue to exceed the critical loads,i.e.,the assigned threshold levels in accordance with emission control policies,in more than 10%of the country’s land area,respectively,indicating remaining risks of acidification and ***,further emission reductions are urgently needed,also because they will help achieving goals related to air quality and nitrous oxide emissions.

关键词： Acidification Critical load Nitrous oxide Surface water chemistry Recovery

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Weak influence of natural vegetation in urban green spaces compared to agricultural ecosystems on House Martin populations:Insights from nationwide citizen science data in the Czech Republic

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Avian Research 2024年第2期15卷 139-146页

作者： Denisa Dvorakova jan Sipos Josef Suchomel Department of Zoology FisheriesHydrobiology and ApicultureMendel University in BrnoZemedelska 161300BrnoCzech Republic

The House Martin(Delichon urbicum)is a common farmland bird species in the European landscape,yet its population numbers are currently in ***,it is not yet sufficiently explained why this long-term decline *** fill this gap in our knowledge,we investigated how land cover composition affects the abundance of House Martins on the landscape scale by using nationwide citizen science *** a generalised linear mixed-effect model(GLMM),we evaluated 12,094 records from the Czech Republic spanning *** analysis underscores the significance of land cover type in shaping House Martin *** specifically,our results indicate that within agricultural land covers“naturally managed arable lands”exhibited significant positive effect,while forests,orchards,and vineyards were deemed less favourable for House Martin *** urban land covers,we found a clear distinction in the impact on House Martin populations,with a positive effect observed in urban infrastructure,development areas,and post-industrial sites(i.e.,UrbanAreas),while an indifferent impact was noted within urban green spaces and landscaped areas(i.e.,GreenUrban).Notably,our findings suggest that the simple spatial,age,and species structure typical of forests in Europe,and similarly,the uniform structure of parks and gardens,may be responsible for the decline in the abundance of the House *** advocate for the preservation or enhancement of urban greenery,expansion of natural vegetation in rural areas and adoption of ecological management practices in orchards and vineyards to mitigate further declines in House Martin populations.

关键词： Citizen science Habitat preferences House Martin Species distribution Urban and suburban landscape

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Dieback of managed spruce stands in western Germany promotes beetle diversity

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Journal of Forestry Research 2024年第3期35卷 55-71页

作者： Eva Plath Chantal Trauth jan Gerhards Laura Griebel Klaus Fischer Department Biology Institute of Integrated Natural SciencesKoblenz-Landau University56070 KoblenzGermany

Biodiversity loss is a significant problem at a global scale and may be amplified by climate *** recent years,coniferous forests have had substantial die-back across Europe due to drought and subsequent bark-beetle *** many studies on the consequences of disturbance and subsequent management have focused on natural stands,management implications for managed spruce stands are not well understood,even though such stands are widespread throughout *** this study,beetle taxonomy,conservation value,and community com-position are compared among spruce plantations and four post-disturbance management approaches:standing dead-wood,lying deadwood,clear cuts,and long-term *** and community composition differed significantly among management categories,while different beetle fami-lies responded *** spruce stands harbored the lowest beetle diversity while the highest taxonomic diver-sity and conservation value was on clear cuts and stands with lying or standing *** proportion of forest specialists was highest in successional *** summary,different forest management categories harbored distinct beetle communities at the family-,species-,and ecological guild ***,post-disturbance management should consider the landscape scale and include different management *** enhances landscape heterogeneity and thus overall biodiversity but could also mitigate negative impacts of natural disturbances on ecosystem services.

关键词： Bark-beetle outbreak Forest dieback Spruce Deadwood Nature conservation Beetle biodiversity-Coleoptera Coniferous forests

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Importance of timely and adequate source control in sepsis and septic shock

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Journal of Intensive Medicine 2024年第3期4卷 281-286页

作者： jan J.De Waele Department of Intensive Care Medicine Ghent University HospitalGhentBelgium Department of Internal Medicine and Pediatrics Faculty of Medicine and Health SciencesGhent UniversityGhentBelgium

Source control is defined as the physical measures undertaken to eliminate the source of infection and control ongoing contamination, as well as restore anatomy and function at the site of infection. It is a key component of the management of patients with sepsis and septic shock and one of the main determinants of the outcome of infections that require source control. While not all infections may require source control, it should be considered in every patient presenting with sepsis;it is applicable and necessary in numerous infections, not only those occurring in the abdominal cavity. Although the biological rationale is clear, several aspects of source control remain under debate. The timing of source control may impact outcome;early source control is particularly relevant for patients with abdominal infections or necrotizing skin and soft tissue infections, as well as for those with more severe disease. Percutaneous procedures are increasingly used for source control;nevertheless, surgery—tailored to the patient and infection—remains a valid option for source control. For outcome optimization, adequate source control is more important than the strategy used. It should be acknowledged that source control interventions may often fail, posing a challenge in this setting. Thus, an individualized, multidisciplinary approach tailored to the infection and patient is preferable.

关键词： Sepsis Septic shock Source control Drainage Debridement

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