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New approach to assess sperm DNA fragmentation dynamics： Fine-tuning mathematical models

Journal of Animal Science and Biotechnology 2017年第3期8卷 592-600页

作者： Isabel Ortiz Jesus Dorado Jane Morrell jaime gosalvez Francisco Crespo Juan M.Jimenez Manuel Hidalgo Veterinary Reproduction Group Department of Animal Medicine and Surgery Faculty of Veterinary Medicine University of Cordoba 14071 Cordoba Spain Department of Clinical Sciences Division of Reproduction Swedish University of Agricultural Sciences Box 7054 SE-75007 Uppsala Sweden Department of Biology Universidad Aut6noma de Madrid 28049 Madrid Spain Department of Reproduction Centro Militar de Cria Caballar (FESCCR-Ministry of Defense) 05005 Avila Spain Department of Chemistry and Physics of Materials University of Salzburg Hellbrunner StraBe 34/111 A-5020 Salzburg Austria

Background： Sperm DNA fragmentation（sDF） has been proved to be an important parameter in order to predict in vitro the potential fertility of a semen sample. Colloid centrifugation could be a suitable technique to select those donkey sperm more resistant to DNA fragmentation after thawing. Previous studies have shown that to elucidate the latent damage of the DNA molecule, sDF should be assessed dynamically, where the rate of fragmentation between treatments indicates how resistant the DNA is to iatrogenic damage. The rate of fragmentation is calculated using the slope of a linear regression equation. However, it has not been studied if s DF dynamics fit this model. The objectives of this study were to evaluate the effect of different after-thawing centrifugation protocols on sperm DNA fragmentation and elucidate the most accurate mathematical model（linear regression, exponential or polynomial） for DNA fragmentation over time in frozen-thawed donkey ***： After submitting post-thaw semen samples to no centrifugation（UDC）, sperm washing（SW） or single layer centrifugation（SLC） protocols, sD F values after 6 h of incubation were significantly lower in SLC samples than in SW or *** of determination（R-2） values were significantly higher for a second order polynomial model than for linear or exponential. The highest values for acceleration of fragmentation（aSDF） were obtained for SW, fol owed by SLC and ***： SLC after thawing seems to preserve longer DNA longevity in comparison to UDC and SW. Moreover,the fine-tuning of models has shown that sDF dynamics in frozen-thawed donkey semen fit a second order polynomial model, which implies that fragmentation rate is not constant and fragmentation acceleration must be taken into account to elucidate hidden damage in the DNA molecule.

关键词： Colloid centrifugation Dynamics Fine-tuning Mathematical models Sperm DNA fragmentation

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Spread of common native and invasive grasses and ruderal trees following anthropogenic disturbances in a tropical dry forest

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Ecological Processes 2017年第1期6卷 394-407页

作者： Xavier A.jaime Skip J.Van Bloem Frank H.Koch Stacy A.C.Nelson Department of Ecosystem Science and Management Texas A&M University2138 TAMUCollege StationTX 77843-2138USA Belle W.Baruch Institute of Coastal Ecology and Forest Science Clemson UniversityPO Box 596GeorgetownSC 29442USA USDA Forest Service Southern Research Station3041 East Cornwallis RoadResearch Triangle ParkNC 27709USA Center for Geospatial Analytics Department of Forestry and Environmental ResourcesNorth Carolina State UniversityRaleighNC 27695USA.

Introduction:A fundamental challenge to the integrity of tropical dry forest ecosystems is the invasion of nonnative grass *** grasses compete for resources and fuel anthropogenic *** 2012,a bulldozer from the Puerto Rico Electric Power Authority cleared a 570-m trail from a state road into a mature dry forest section of Guánica Forest to control a *** monitored colonization by a non-native invasive grass(Megathyrsus maximus),a highly invasive tree(Leucaena leucocephala),and a native grass(Uniola virgata),as well as natural regeneration,along the bulldozer *** determined whether bulldozing facilitated colonization by these species into the forest and the extent of ***:Distance from propagule source and temporal variations strongly influenced colonization by our three focal *** maximus invaded along the trail from source populations by the state *** establishment of new colonies of *** seedlings went as far as 570 m inside the forest(i.e.,at the end of the bulldozer trail),but we found most new colonies within 270 m of the *** leucocephala exhibited a similar spreading *** disturbance,Uniola virgata was distributed widely across the forest,but the highest densities were found in areas near the latter portion(>401 m)of the bulldozer ***,the species formed new clumps along more than half of the trail(250 to 570 m),apparently colonizing from undisturbed patches ***:Bulldozing facilitated the invasion of non-native *** projected community assemblage will be more fire-prone than before since *** carries fire across the landscape better than ***,emphasizing the capacity of invasive plant colonization to alter local ecological processes after only a single wildfire and bulldoze *** results provide a valuable baseline for short-term vegetation response to anthropogenic disturbances in tropical semi-deciduous dry forests.

关键词： Tropical dry forest Grass invasions Bulldozing Wildfire Leucaena leucocephala Megathyrsus(Panicum)maximus Uniola virgata

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Sarcomatoid carcinoma of the pancreas—a rare tumor with an uncommon presentation and course:A case report and review of literature

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World Journal of Clinical Cases 2021年第15期9卷 3716-3725页

作者： Paulina F Toledo Zoltan Berger Laura Carreño Gonzalo Cardenas jaime Castillo Omar Orellana Department of Gastroenterology Hospital Clinico Universidad de ChileSantiago 834456IndependenciaChile Department of Internal Medicine Section GastroenterologyHospital Clinico Universidad de ChileSantiago 834456IndependenciaChile Department of Pathology Hospital Clínico de la Universidad de ChileSantiago 834456IndependenciaChile Department of Radiology Hospital Clínico Universidad de ChileSantiago 834456IndependenciaChile Department of Surgery Hospital Clínico Universidad de ChileSantiago 834456IndependenciaChile

BACKGROUND Sarcomatoid carcinoma of the pancreas(SCP)is a rare type of pancreatic neoplasm,and only a few cases have been described in the ***,it is composed mostly of atypical spindle cells with apparent sarcomatous *** SUMMARY This is a report of a 61-year-old Chilean woman who underwent medical investigation for acute abdominal *** tomography identified a solid tumor in the tail of the pancreas with features suspicious of ***-bloc distal pancreatectomy and splenectomy were performed to excise the *** and immunohistochemistry were confirmatory of sarcomatoid carcinoma with lymphovascular *** surgery,the patient did not receive *** studies indicate a poor prognosis for this type of ***,our patient has survived for 35 mo with no recurrence to *** The case presented herein is a patient with an SCP with a rare presentation and long-term survival after surgery despite not receiving adjuvant chemotherapy.

关键词： Pancreatic neoplasms Sarcomatoid carcinoma Pancreatic ductal carcinoma Survival Abdominal pain Case report

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Genetic diversity,population structure,and relationships in a collection of pepper(Capsicum spp.)landraces from the Spanish centre of diversity revealed by genotypingby-sequencing(GBS)

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Horticulture Research 2019年第1期6卷 1030-1042页

作者： Leandro Pereira-Dias Santiago Vilanova Ana Fita jaime Prohens Adrián Rodríguez-Burruezo Instituto de Conservación y Mejora de la Agrodiversidad Valenciana Universitat Politècnica de València46022 ValenciaSpain

Pepper(Capsicum spp.)is one of the most important vegetable crops;however,pepper genomic studies lag behind those of other important *** we present the results of a high-throughput genotyping-by-sequencing(GBS)study of a collection of 190 Capsicum ***,including 183 of five cultivated species(***,***,***,***,and ***)and seven of the wild form *** *** generated 6,766,231 high-quality read tags,of which 40.7%were successfully aligned to the reference *** calling yielded 4083 highly informative segregating *** diversity and relationships of a subset of 148 accessions,of which a complete passport information was available,was studied using principal components analysis(PCA),discriminant analysis of principal components(DAPC),and phylogeny ***,***,and *** were successfully separated by all *** population was divided into seven clusters by DAPC,where *** accessions were clustered together with *** *** accessions were spread into two distinct genetic pools,while European accessions were admixed and closely *** of accessions was mainly associated to differences in fruit characteristics and *** studies showed a close relation between Spanish and Mexican accessions,supporting the hypothesis that the first arose from a main genetic flow from the ***’s D statistic values were consistent with positive selection in the *** clusters,possibly related to domestication or selection towards traits of *** work provides comprehensive and relevant information on the origin and relationships of Spanish landraces and for future association mapping studies in pepper.

关键词： crops pepper GBS

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Ionic Species Affect the Self-Propulsion of Urease-Powered Micromotors

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Research 2020年第1期2020卷 349-362页

作者： Xavier Arque Xavier Andres Rafael Mestre Bernard Ciraulo jaime Ortega Arroyo Romain Quidant Tania Patino Samuel Sanchez Institute for Bioengineering of Catalonia(IBEC) The Barcelona Institute of Science and Technology(BIST)Baldiri i Reixac 10-1208028 BarcelonaSpain Institute of Photonic Sciences(ICFO) The Barcelona Institute of Science and TechnologyCarl Friedrich Gauss 308860 CastelldefelsBarcelonaSpain InstitucióCatalana de Recerca i Estudis Avançats(ICREA) Pg.Lluís Companys 2308010 BarcelonaSpain Chemistry Department University of RomeTor VergataVia della Ricerca Scientifica00133 RomeItaly

Enzyme-powered motors self-propel through the catalysis of in situ bioavailable fuels,which makes them excellent candidates for biomedical ***,fundamental issues like their motion in biological fluids and the understanding of the propulsion mechanism are critical aspects to be tackled before a future application in ***,we investigated the physicochemical effects of ionic species on the self-propulsion of urease-powered *** showed that the presence of PBS,NaOH,NaCl,and HEPES reduced self-propulsion of urease-powered micromotors pointing towards iondependent mechanisms of *** studied the 3D motion of urease micromotors using digital holographic microscopy to rule out any motor-surface interaction as the cause of motion decay when salts are present in the *** order to protect and minimize the negative effect of ionic species on micromotors’performance,we coated the motors with methoxypolyethylene glycol amine(mPEG)showing higher speed compared to noncoated motors at intermediate ionic *** results provide new insights into the mechanism of urease-powered micromotors,study the effect of ionic media,and contribute with potential solutions to mitigate the reduction of mobility of enzyme-powered micromotors.

关键词： holographic salts catalysis

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Functional physiotherapy method results for the treatment of idiopathic clubfoot

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World Journal of Orthopedics 2019年第6期10卷 235-246页

作者： Noriela Carmen Garcia-Gonzalez Jorge Hodgson-Ravina Armando Aguirre-jaime Servicio de Rehabilitacion Servicio de Ortopedia y TraumatologiaUnidad de Investigacion Clinica y ExperimentalHospital Universitario Nuestra Senora de CandelariaSanta Cruz de Tenerife 38010Spain Colegio de Enfermeria Laureate International UniversitiesSanta Cruz de Tenerife 38001Spain

BACKGROUND Idiopathic clubfoot is a congenital deformity of multifactorial *** initial treatment is eminently conservative;one of the methods applied is the Functional physiotherapy method(FPM),which includes different approaches:Robert Debré(RD)and Saint-Vincent-de-Paul(SVP)among *** method is based on manipulations of the foot,bandages,splints and exercises adapted to the motor development of the child aimed to achieve a plantigrade and functional *** hypothesis was that the SVP method could be more efficient than the RD method in correcting deformities,and would decrease the rate of *** To compare the RD and SVP methods,specifically regarding the improvement accomplished and the frequency of surgery needed to achieve a plantigrade *** Retrospective study of 71 idiopathic clubfeet of 46 children born between February 2004 and January 2012,who were evaluated and classified in our hospital according to severity by the Dimeglio-Bensahel *** included moderate,severe and very severe ***-four feet were treated with the RD method and 37 feet with the SVP *** outcomes at a minimum of two years were considered as very good(by physiotherapy),good(by percutaneous heel-cord tenotomy),fair(by limited surgery),and poor(by complete surgery).RESULTS Complete release was not required in any case;limited posterior release was done in 23 cases(74%)with the RD method and 9(25%)with the SVP method(P<0.001).The percutaneous heel-cord tenotomy was done in 2 feet treated with the RD method(7%)and 6 feet(17%)treated with the SVP method(P<0.001).Six feet in the RD group(19%)and twenty-one feet(58%)in the SVP group did not require any surgery(P<0.001).CONCLUSION Our study provides evidence of the superiority of the SVP method over the RD method,as a variation of the FPM,for the treatment of idiopathic clubfoot.

关键词： Congenital clubfoot Clubfeet Talipes equinovarus Conservative treatment Physical therapy Physiotherapy techniques Conservative methods

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Simulation Tools for a Fiber-Optic Based Structural Health Monitoring System

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Transactions of Nanjing University of Aeronautics and Astronautics 2018年第2期35卷 219-225页

作者： Alfredo Güemes Antonio Fernandez-Lopez jaime García-Ramírez Maria Eugenia Reyes-Perez Flor Criado Zurita Laboratory for Composites & Smart Structures Department of AeronauticsPolytechnic University of Madrid

Probability of detection(POD)graphics allow for a change from qualitative to quantitative assessment for every damage detection system,and as such it is a main request for conventional non-destructive testing(NDT)*** availability can greatly help towards the industrialization of the corresponding Structural health monitoring(SHM)*** having in mind that for SHM systems the sensors are at fixed positions,and the location of a potential damage would change its *** robust simulation tools are required to obtain the model assisted probability of detection(MAPOD)which is needed to validate the SHM *** tool may also help for the optimization of the sensor distribution,and finally will allow a probabilistic risk ***,simulation of ultrasonic waves SHM system,was a main milestone in this *** article deals with the simulation tools for a strain based SHM system,using fiber optic sensors(FOS).FOS are essentially strain/temperature sensors,either with multi-point or with distributed *** simulation tool includes the finite element model(FEM)for the original and damaged structure,and algorithms to compare the strain data at the pre-established sensors locations,and from this comparison to extract information about damage occurrence and *** study has been applied to the structure of an all-composite unmanned aircraft vehicle(UAV)now under construction,designed at Universidad Politecnica de Madrid for the inspection of electrical utilities *** sensing optical fibers were internally bonded at the fuselage and *** inspection is planned to be done with the aircraft at the test bench by imposing known *** the acquired strain data,damage occurrence may be calculated as slight deviations from the *** is a fast inspection procedure without requiring trained specialists,and it would allow for detection of hidden *** indicates that stringer par

关键词： damage detection fiber optics distributed sensing finite element models probability of detection(POD) principal component analysis (PCA) fibre bragg gratings (FBG)

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Donor risk factors in pancreas transplantation

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World Journal of Transplantation 2020年第12期10卷 372-380页

作者： Luis Muñoz-Bellvís jaime López-Sánchez Department of General&Gastrointestinal Surgery Hospital Universitario de SalamancaUniversidad de SalamancaSalamanca 37007Spain Salamanca Biomedical Research Institute(IBSAL) Universidad de SalamancaSalamanca 37007Spain

The aim of the work was to analyze and expose the donor and recipient riskfactors in pancreas transplantation. In the following paper, we exposed the 2018Spanish Consensus Document on Donor and Recipient Selection Criteria forPancreas Transplantation. An assessment of the previous Selection Criteria forDonors and Recipients of Pancreas Transplantation, published in 2005 by theSpanish Pancreas Transplant Group (GETP) and the National TransplantOrganization (ONT) was performed. A literature review was performed usingCochrane Library, PubMed and Google Scholar databases. Some of the followingterms were used for the literature search: “Diabetes Mellitus,” “PancreasTransplantation,” “Insulin-Secreting Cells,” “Pancreas Allograft Thrombosis,”“Allograft Pancreatitis,” “Donors’ Risk Factors,” “Recipients’ Risk Factors,”“Pancreas Allograft Rejection” and “Pancreas Allograft Survival.” After anextended search, different inclusion criteria were established. Articles anddocuments with abstracts of full text and in English or Spanish language wereselected. Subsequently, different scientific meetings took place during 2015 and2016 by the GETP. Finally, the updated criteria were published by the GETP andONT in 2018. Several risk factors have been described in pancreas transplantationthat can be divided into donor risk factors: Advanced age (> 50 years);high bodymass index (BMI) (> 30 kg/m2);cause of death (e.g., stroke);previoushyperglycemia;hyperamylasemia;cold ischemia time (greater than 8 or 12 h,depending on the type of donation);the use of vasopressors in the intensive careunit or cardiac arrest;and the macroscopic aspect of the pancreas allograft. Thefollowing are recipient risk factors: Advanced age (> 50 years);active smoking;high BMI (> 30 kg/m2);and peripheral artery disease or sensorimotorpolyneuropathy. Based on the aforementioned parameters, different selectioncriteria have been established for the recipients depending on the type of pancreastransplantation. Knowledge

关键词： Pancreas transplantation Pancreas donor Pancreas recipient Diabetes mellitus Risk factors Graft rejection

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Indirect facilitation by a liana might explain the dominance of a small tree in a temperate forest

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Journal of Plant Ecology 2018年第4期11卷 604-612页

作者： jaime Madrigal-González Rodrigo S.Rios Cristina F.Aragón Ernesto Gianoli Grupo de Ecología Forestal y Restauración Departamento de Ciencias de la VidaUniversidad de Alcaláctra.Madrid-Barcelona km 33.428805Alcaláde HenaresSpain Departamento de Biología Universidad de La SerenaCasilla 554 La SerenaChile Departamento de Botánica Universidad de ConcepciónCasilla 160-C ConcepciónChile

Aims Lianas are expected to influence composition,structure and func-tioning of forest systems due to unequal distribution across the potential set of host ***,our understanding of mecha-nisms associated with preferences for specific hosts is still limited,and so is our ability to discern between endogenous and exogenous forces driving forest dynamics in the long *** this paper,we eval-uated whether the dominant liana Hedera helix can indirectly con-tribute to the eventual dominance of the small multi-stemmed tree Corylus avellana in a remnant temperate forest in central Iberian Peninsula from comparatively reduced liana infestation on ***-lana relative to co-occurring woody *** through principal component analysis and co-occurrence ana-lysis,we studied the distribution and spatial association between woody species and the liana *** analyzed the relationship between the number of species in a plot and the number of species infested by the liana to test the hypothesis that *** is a gen-eralist *** generalized linear mixed models,we tested the dynamic-multi-stemmed growth form of *** as a plaus-ible life strategy to withstand,in the long run,the liana *** particular,we tested(i)the relationship between stem size and the probability of *** infestation including all the tree species within plots and(ii)the relationship between stem size and mortal-ity as evidence of the stem turn over in the tree *** Findings Our results indicate that *** and *** significantly co-occur in mature stands of this remnant temperate forest where pion-eer woody species are *** helix severely infests all the woody species whenever stem size exceed≈25 cm perimeter and there is physical contact at the base of the *** implies that all the trees in the community are potential hosts for *** models indicate that both,infestation by *** and stem mortality,are positively re

关键词： indirect facilitation species coexistence species dominance competition liana infestation

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The role of monoamines in modulating behavior

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Current Zoology 2016年第3期62卷 253-255页

作者： John G. SWALLOW Andrew N. BUBAK jaime L. GRACE Guest Editors Department of Integrative Biology University of Colorado Denver Denver CO USA Neuroscience Program University of Colorado Denver Anschutz Medical Campus Aurora CO USA Department of Biology Bradley University Peoria IL USA

Understanding the mechanisms underlying complex behaviors re- quires a comprehensive investigation of the neurobiological factors that regulate and modulate their expression. Monoamines, such as serotonin, dopamine, and noradrenaline, serve a variety of essential physiological roles in modulating animal behavior. Furthermore, the evolutionary conservation of these aminergic systems spans across both vertebrates and invertebrates, having comparable effects in such diverse processes as learning and memory, aggression, mating behaviors and reproduction, stress responses, locomotion, and col- lective social behaviors （Dishman 1997; Libersat and Pflueger 2004; Kamhi and Traniello 2013; Bubak et al. 2014a; De Boer et al. 2015）. Outstanding research is currently being conducted in this field, uncovering remarkable similarities in neural circuitries even among highly divergent taxa, such as Drosophila and humans. Investigating the neural mechanisms involved in the monoaminerglc modulation of behavior across a variety of taxonomically distant species can provide researchers with a better understanding of the origins and functions of these systems. The goal of this special issue is to provide a venue in which colleagues studying similar questions across highly divergent animal systems can present their recent and groundbreaking work in this exciting area of biology. We hope this collection of papers will encourage and stimulate a dialogue on the similarities of monoaminergic function in a wide variety of animals and ultimately promote future comparative approaches when inves- tigating behavioral modulation.

关键词：单胺类神经递质动物行为生物学因素无脊椎动物神经系统去甲肾上腺素神经机制 5-羟色胺

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