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Comparison of methods for deriving phenotypes from incomplete observation data with an application to age at puberty in dairy cattle

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journal of Animal Science and Biotechnology 2024年第2期15卷 535-545页

作者： Melissa A.Stephen Chris R.Burke jennie E.Pryce Nicole M.Steele Peter R.Amer Susanne meier Claire V.C.Phyn Dorian j.Garrick DairyNZ Ltd 605 Ruakura RoadHamilton 3240New Zealand AL Rae Centre for Genetics and Breeding-Massey University RuakuraHamilton 3214New Zealand Agriculture Victoria Research AgriBioCentre for AgriBioscienceBundooraVictoria 3083Australia School of Applied Systems Biology La Trobe UniversityBundooraVictoria 3083Australia AbacusBio DunedinNew Zealand

Background Many phenotypes in animal breeding are derived from incomplete measures,especially if they are challenging or expensive to measure *** include time-dependent traits such as reproductive status,or *** measures for these traits result in phenotypes that are subject to left-,interval-and rightcensoring,where phenotypes are only known to fall below an upper bound,between a lower and upper bound,or above a lower bound *** we compare three methods for deriving phenotypes from incomplete data using age at first elevation(>1 ng/mL)in blood plasma progesterone(AGEP4),which generally coincides with onset of puberty,as an example *** We produced AGEP4 phenotypes from three blood samples collected at about 30-day intervals from approximately 5,000 Holstein–Friesian or Holstein–Friesian×jersey cross-bred dairy heifers managed in 54 seasonal-calving,pasture-based herds in New *** used these actual data to simulate 7 different visit scenarios,increasing the extent of censoring by disregarding data from one or two of the three *** methods for deriving phenotypes from these data were explored:1)ordinal categorical variables which were analysed using categorical threshold analysis;2)continuous variables,with a penalty of 31 d assigned to right-censored phenotypes;and 3)continuous variables,sampled from within a lower and upper bound using a data augmentation *** Credibility intervals for heritability estimations overlapped across all methods and visit scenarios,but estimated heritabilities tended to be higher when left censoring was *** sires with at least 5 daughters,the correlations between estimated breeding values(EBVs)from our three-visit scenario and each reduced data scenario varied by method,ranging from 0.65 to *** estimated breed effects also varied by method,but breed differences were smaller as phenotype censoring *** Our results indicate that using

关键词： Cattle Gibbs sampler Markov-chain Monte Carlo(MCMC) Puberty

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Hepatocellular transport proteins and their role in liver disease

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World journal of Gastroenterology 2001年第2期7卷 157-169页

作者： Carmen Stanca Diana jung Peter j.meier Gerd A.Kullak-Ublick Division of Gastroenterology and Hepatology and Division of Clinical Pharmacology and Toxicology Department of Internal MedicineUniversity HospitalCH-8091 Zurich/Switzerland

MOLECULAR PHYSIOLLGY OF HEPATOCELLULAR TRANSPORT PROTEINS Basolaferal transport systems Na+-dependent bile salt uptake Uptake of bile salts into the liver was first isolated perfused rat liver[1],isolated hepatocyte... 详细信息

关键词： ATP-Binding Cassette Transporters Animals Carrier Proteins Hepatocytes Humans Liver Liver Diseases Organic Anion Transporters Organic Cation Transport Proteins Research Support, Non-U.S. Gov't

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Crystal Growth of[Ca3Al(OH)6·12H2O]2·(SO4)3·2H2O (Ettringite) Studied Under Microgravity Conditions

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journal of Wuhan University of Technology(Materials Science) 2020年第5期35卷 893-899页

作者： meier M R LEI L Rinkenburger A Plank j Technische Universitat Miinchen Chair for Construction Chemistry85747 GarchingLichtenbergstrafie 4Germany

On parabolic flights,the growth of ettringite,[Ca3Al(OH)6·12H2O]2·(SO4)3·2H2O,a major reaction product of cement with water which forms instantaneously,was crystallized under microgravity conditions and *** the experiments,Ca(OH)2/Al2(SO4)3 solutions were combined and reacted for 10?s,followed by immediate filtration of the suspension and subsequent quenching with *** the ettringite crystals,the size,aspect ratios,quantity and morphology were determined and the results were compared with those from identical experiments performed under terrestric *** microgravity,generally smaller crystals (l-2.9 μm) precipitated in larger amount than under normal gravity (l-3.5 μm).The aspect ratios of the crystals grown under terrestric or microgravity condition were comparable at about *** is assumed that the reason for the smaller ettringite crystals is the absence of convection leading to more initial nuclei,but slower crystal growth which is diffusion ***,no preference relative to the ion transport to the different faces of the crystals *** results contribute to the understanding of the mineralization of inorganic salts under microgravity conditions for which hitherto only a handful of examples were reported.

关键词： crystallization ettringite microgravity morphology nucleation

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Radiofrequency ablation versus microwave ablation for colorectal liver metastases:long-term results of a retrospective cohort surgical experience

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Hepatobiliary Surgery and Nutrition 2024年第5期13卷 759-770,I0001页

作者： Ali Gunduz Sarioglu Chase j.Wehrle Ege Akgun Arturan Ibrahimli james F.Bena Eren Berber Department of Endocrine Surgery Cleveland ClinicClevelandOHUSA Department of General Surgery Cleveland ClinicClevelandOHUSA Department of Quantitative Health Sciences Cleveland ClinicClevelandOHUSA

Background:Ablation is an alternative treatment modality for selected patients with colorectal liver metastases(CRLMs).Although initially widely performed via radiofrequency ablation(RFA),more recently,microwave ablation(MWA)is being preferred due to its perceived superiority in creating the ablation *** aim of this study is to compare the long-term efficacy of these two modalities performed ***:Patients undergoing surgical liver ablation from 2005-2023 at a tertiary center by a single surgeon for CRLM were included in a retrospective institutional review board-approved *** were compared using Wilcoxon,Chi-square,Kaplan-meier,and Cox multivariate regression *** data are presented as median(interquartile range).Results:There were a total of 242 *** RFA was done in 121 patients with 303 lesions and laparoscopic MWA in 121 patients with 300 *** was no difference between the groups regarding operative time(161 vs.147 minutes,respectively,P=0.4),perioperative morbidity(3%vs.8%,respectively,P=0.2)or hospital stay(1 vs.1 day,P=0.05).Local recurrence(LR)per lesion with at least 1 year of imaging follow-up was 29%in the RFA and 13%in the MWA group(Pmeier analysis of these cohorts showed increased LR-free survival in the MWA group *** RFA group(P=0.005).Conclusions:This large study confirms our initial observation that local tumor control rate is better after MWA ***.

关键词： Colorectal cancer liver metastasis liver ablation radiofrequency ablation(RFA) microwave ablation(MWA) local recurrence(LR)

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Increased susceptibility for intrahepatic cholestasis of pregnancy and contraceptive-induced cholestasis in carriers of the 1331T>C polymorphism in the bile salt export pump

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World journal of Gastroenterology 2008年第1期14卷 38-45页

作者： Yvonne meier Tina Zodan Carmen Lang Roland Zimmermann Gerd A Kullak-Ublick Peter j.meier Bruno Stieger Christiane Pauli-Magnus Division of Clinical Pharmacology and Toxicology Department of Internal Medicine University Hospital Zurich Zurich Switzerland Department of Gynecology and Obstetrics University Hospital Zurich Zurich Switzerland Division of Clinical Pharmacology and Toxicology Department of Internal Medicine University Hospital Zurich Zurich Switzerland Clinical Trial Unit University Hospital Basel Basel Switzerland

AIM： To study the association of three common ABCB11 and ABCC2 polymorphisms （ABCB11： 1331T〉C→V444A; ABCC2： 3563T〉A → V1188E and 4544G 〉A → C1515Y） with intrahepatic cholestasis of pregnancy （ICP） and contraceptive-induced cholestasis （CIC）. METHODS： ABCB11 and ABCC2 genotyping data were available from four CIC patients and from 42 and 33 ICP patients, respectively. Allele-frequencies of the studied polymorphisms were compared with those in healthy pregnant controls and Caucasian individuals. Furthermore, serum bile acid levels were correlated with the presence or absence of the 1331 C allele. RESULTS： The ABCB11 1331T〉C polymorphism was significantly more frequent in cholestatic patients than in pregnant controls： C allele 76.2% （CI, 58.0-94.4） vs 51.3% （CI 35.8-66.7）, respectively （P = 0.0007）; and CC allele 57.1% （CI 36.0-78.3） vs 20% （CI 7.6-32.4）, respectively （P = 0.0065）. All four CIC patients were homozygous carriers of the C allele. In contrast, none of the studied ABCC2 polymorphism was overrepresented in ICP or CIC patients. Higher serum bile acid levels were found in carriers of the 1331CC genotype compared to carriers of the TT genotype. CONCLUSION： Our data support a role for the ABCB11 1331T〉C polymorphism as a susceptibility factor for the development of estrogen-induced cholestasis, whereas no such association was found for ABCC2. Serum bile acid and 7-glutamyl transferase levels might help to distinguish ABCB4- and ABCB11-related forms of ICP and CIC.

关键词： Cholestasis of pregnancy Contraceptive-induced cholestasis Bile salt export pump Multidrugresistance associated protein 2 Pharmacogenetics

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Influence of gastric inhibitory polypeptide on pentagastrinstimulated gastric acid secretion in patients with type 2 diabetes and healthy controls

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World journal of Gastroenterology 2006年第12期12卷 1874-1880页

作者： j.ris j.meier Michael A Nauck Bartholomaeus Kask jens j Hoist Carolyn F Deacon Wolfgang E Schmidt Baptist Gallwitz Department of Medicine I St. Josef-HospitalRuhr-University Bochum Germany Diabeteszentrum Bad Lauterberg Germany Department of Medical Physiology The Panum Institute University of Copenhagen Denmark Department of Medicine IV Eberhard-Karls- University Ttibingen Germany

AIM： Gastric inhibitory polypeptide is secreted from intestinal K-cells in response to nutrient ingestion and acts as an incretin hormone in human physiology. While animal experiments suggested a role for GIP as an inhibitor of gastric secretion, the GIP effects on gastric acid output in humans are still controversial. METHODS： Pentagastrin was administered at an infusion rate of 1 μg . kg^-1 . h^-1 over 300 min in 8 patients with type 2 diabetes （2 female, 6 male, 54± 10 years, BMI 30.5 ± 2.2 kg/m^2; no history of autonomic neuropathy） and 8 healthy subjects （2/6, 46 ± 6 years., 28.9 ± 5.3 kg/ m^2）. A hyperglycaemic clamp （140 mg/dl） was performed over 240 min. Placebo, GIP at a physiological dose （1 pmol . kg^-1 . min^-1）, and GIP at a pharmacological dose （4 mol . kg^-1 . min^-1） were administered over 60 min each. Boluses of placebo, 20 pmol GIP/kg, and 80 pmol GIP/kg were injected intravenously at the beginning of each infusion period, respectively. Gastric volume, acid and chloride output were analysed in 15-min intervals. Capillary and venous blood samples were drawn for the determination of glucose and total GIP. Statistics were carried out by repeated-measures ANOVA and one-way ANOVA. RESULTS： Plasma glucose concentrations during the hyperglycaemic clamp experiments were not different between patients with type 2 diabetes and controls. Steady-state GIP plasma levels were 61 ±8 and 79 ± 12 pmol/I during the low-dose and 327±35 and 327± 17 pmol/I during the high-dose infusion of GIP, in healthy control subjects and in patients with type 2 diabetes, respectively （P= 0.23 and p 0.99）. Pentagastrin markedly increased gastric acid and chloride secretion （P〈 0.001）. There were no significant differences in the rates of gastric acid or chloride output between the experimental periods with placebo or any dose of GIP. The temporal patterns of gastric acid and chloride secretion were similar in patients with type 2 diabetes and healthy controls （P= 0.86 and P= 0.6

关键词： Gastric inhibitory polypeptide Gastric acid secretion Type 2 diabetes Hyperglycemic clamp Pentagastrin-stimulated acid secretion

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Mid-term survival of the Optimys short stem: A prospective case series of 500 patients

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World journal of Orthopedics 2024年第3期15卷 257-265页

作者： Bryan Hamans Sheryl de Waard Sjoerd Kaarsemaker Esther R C janssen Inger N Sierevelt Gino M M j Kerkhoffs Daniël Haverkamp Department of Orthopaedic Surgery Xpert ClinicAmsterdam 1101EANetherlands Department of Orthopedic Surgery Amsterdam University Medical CenterAmsterdam 1105 AZNetherlands Esther R C janssen Department of Orthopaedic SurgeryViecuri Medisch CentrumVenlo 5912 BLNetherlands Centre for Orthopaedic Research Spaarne ZiekenhuisHoofddorp 2134 TMNetherlands Department of Orthopaedic Surgery and Sports Medicine Amsterdam UMC-Location AMCAmsterdam 1105 AZNetherlands Department of Orthopedic Surgery Xpert Orthopedic Surgery ClinicAmsterdam 1101 EANetherlands

BACKGROUND In recent years,there has been an increase in the number of total hip arthroplasty procedures in the younger patient *** active group has higher expectations of their prosthesis in comparison to the older population,and there is a greater physical demand for the *** femoral stems were in-troduced to retain proximal bone stock and joint biomechanics and became more common to implant in this specific ***,the long-term survival and functional outcomes of various short stems are still being investigated in different *** To determine the 5-year survival of the Optimys hip *** This was a prospective multicenter cohort study of 500 patients conducted in two hospitals in the *** patients received the Optimys short stem(Mathys Ltd,Bettlach,Switzerland).The primary outcome measure was survival of the hip stem,with revision as the *** secondary outcome measurements included patient-reported outcome measures(PROMs).Kaplan-meier analysis was used to calculate the 5-year survival ***-minus-log transformation was performed to calculate the 95%confidence interval(95%CI).Mixed model analyses were performed to assess the course of the PROMs during the 1st 2 years after *** were modeled separately for the 1st and 2nd years to calculate the yearly change in PROMs during both follow-up periods with accompanying 95%*** The mean age of the total 500 patients was 62.3 years(standard deviation:10.6)and 202 were male(40%).At a median follow-up of 5.5 years(interquartile range:4.5-6.7),7 patients were deceased and 6 revisions were registered,for infection(n=3),subsidence(n=2)and malposition(n=1).This resulted in an overall 5-year survival of 98.8%(95%CI:97.3-99.5).If infection was left out as reason for revision,a stem survival of 99.4%(95%CI:98.1-99.8)was *** questionnaires were completed by 471 patients(94%),317 patients(63%)completed the 1-year follow-up questionna

关键词： Total hip arthroplasty Femoral stem Short stem Optimys Survival 5-year survival Revision PROMs

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小尺寸火焰传热阻碍规律的实验研究

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燃烧科学与技术 2012年第1期18卷 8-14页

作者：姜冯辉祁海鹰 de ris j L KHAN M M 清华大学热科学与动力工程教育部重点实验室北京100084 法特瑞互助保险公司工程与研究部

应用小尺寸火蔓延实验装置(FPA),在不同的外加辐射强度和燃烧环境氧体积分数条件下,对两种常见聚合物PMMA和POM的燃烧特性和传热阻碍的测量方法进行了实验研究.研究发现,两种燃料的无量纲燃烧质量损失速率与无量纲外加辐射热流之间存在... 详细信息

应用小尺寸火蔓延实验装置(FPA),在不同的外加辐射强度和燃烧环境氧体积分数条件下,对两种常见聚合物PMMA和POM的燃烧特性和传热阻碍的测量方法进行了实验研究.研究发现,两种燃料的无量纲燃烧质量损失速率与无量纲外加辐射热流之间存在确定的通用线性关系,即"燃烧质量损失速率基线";火焰传热阻碍系数分别高达0.4和0.3,它随燃烧环境氧体积分数增加而增大,但不随外加辐射强度变化.研究为发展火蔓延理论模型和燃料可燃性测试方法提供了重要的参考依据.

关键词：火焰传热阻碍火蔓延实验装置(FPA) 小尺寸燃烧燃烧质量损失速率基线火焰热量反馈因子

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Effects of far-off and close-up transition cow feeding on uterine health,postpartum anestrous interval,and reproductive outcomes in pasture-based dairy cows

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journal of Animal Science and Biotechnology 2020年第2期11卷 493-503页

作者： S.meier j.K.Kay B.Kuhn-Sherlock A.Heiser M.D.Mitchell M.A.Crookenden M.Vailati Riboni j.j.Loor j.R.Roche DairyNZ Limited Private Bag 3221Hamilton 3240New Zealand AgResearch Hopkirk Research InstituteGrasslands Research CentrePalmerston North 4442New Zealand Centre for Children’s Health Research Queensland University of TechnologyLevel 662 Graham StreetSouth BrisbaneQueensland 4101Australia DairyNZ Limited c/o University of Auckland3A Symonds StAuckland 1010New Zealand Department of Animal Sciences University of IllinoisUrbana 61801USA Ministry for Primary Industries-ManatūAhu Matua Charles Ferguson TowerPipiteaWellington 6140New Zealand School of Biological Sciences University of AucklandPrivate Bag 92019Auckland 1142New Zealand

Background:In seasonal,pasture-based,dairy production systems,cows must recover from calving and become pregnant within two to 3 *** achieve this,the uterus must involute and ovulation must occur and continue at regular *** these processes are affected by the cows’nutritional or metabolic status post-calving,the objective of this study was to evaluate the effect of cow feeding strategies on uterine health,the length of postpartum anestrous interval,and reproductive *** treatments consisted of two feeding strategies during late-lactation and early dry period(far-off period;starting 4-month pre-calving)and three close-up dry period feeding regimes(1-month pre-calving)in a 2×3 factorial *** randomly assigned 150 cows to one of two far-off *** late lactation,the herds(n=75 cows per herd)were either control-fed(Controlfed)or over-fed(Overfed)to achieve a low or high body condition score(4-month pre-calving;BCS;~4.25 and^4.75;10-point scale)at cessation of *** each of these treatments,three feeding levels were applied during the close-up period(1-month pre-calving):~65%(Feed65),~90%(Feed90),or^120%(Feed120)of metabolizable energy(ME)intakes relative to pre-calving ***:Uterine health improved(***(PMN)cells declined)with increased feeding during the close-up period for cows in the Overfed *** reverse was evident for the Controlfed group with the greatest PMN at the highest intakes during the close-up *** postpartum anoestrous interval(PPAI)was shorter in cows from the Overfed group when moderately fed(Feed90)during the close-up period;in comparison,the PPAI was shorter in the Controlfed group,when those cows were overfed in the close-up period(Feed120).The cows in the Overfed treatment had greater conception and pregnancy rates if cows had moderate dry matter intakes(Feed90)during the close-up period;these reproductive variables were less under excessive feed inta

关键词： Close-up Dairy cows Far-off Reproduction Transition period

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An Index-Based Approach to Assess Social Vulnerability for Hamburg, Germany

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International journal of Disaster risk Science 2023年第5期14卷 782-794页

作者： Malte von Szombathely Franziska S.Hanf janka Bareis Linda meier jürgen Oßenbrügge Thomas Pohl Institute for Geography Center for Earth System Research and SustainabilityUniversität Hamburg20146HamburgGermany Meteorological Institute Center for Earth System Research and SustainabilityUniversität Hamburg20146HamburgGermany Institute for Geography Universität Hamburg20146HamburgGermany Research Unit for Sustainability and Climate risks Center for Earth System Research and SustainabilityUniversität Hamburg20144HamburgGermany

In this study,we set out to develop a new social vulnerability index(SVI).In doing so,we suggest some conceptual improvements that can be made to existing methodical approaches to assessing social *** make the entanglement of socio-spatial inequalities visible,we are conducting a small-scale study on heterogeneous urban development in the city of Hamburg,*** kind of high-resolution analysis was not previously available,but is increasingly requested by political decision *** can thus show hot spots of social vulnerability(SV)in Hamburg,considering the effects of social welfare,education,and *** doing so,we defined SV as a contextual concept that follows the recent shift in discourse in line with the Intergovernmental Panel on Climate Change’s(IPCC)concepts of risk and *** SVI consists of two subcomponents:sensitivity and coping *** areas of Hamburg were identified using satellite information and merged with the social data units of the *** with high SVI are distributed over the entire city,notably in the district of Harburg and the Reiherstieg quarter in Wilhelmsburg near the Elbe,as well as in the densely populated inner city areas of Eimsbüttel and *** a map at a detailed scale,our SVI can be a useful tool to identify areas where the population is most vulnerable to climate-related *** conclude that an enhanced understanding of urban social vulnerability is a prerequisite for urban risk management and urban resilience planning.

关键词： Climate change adaptation Hamburg risk approach Social vulnerability Social vulnerability index

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