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Genome assembly of autotetraploid Actinidia arguta highlights adaptive evolution and enables dissection of important economic traits

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Plant Communications 2024年第6期5卷 173-192页

作者： Xue-Mei Lu Xiao-Fen Yu Guo-Qiang Li Ming-Hao Qu huan wang Chuang Liu Yu-Ping Man Xiao-Han Jiang Mu-Zi Li Jian wang Qi-Qi Chen Rui lei Cheng-Cheng Zhao Yun-Qiu Zhou Zheng-wang Jiang Zuo-Zhou Li Shang Zheng Chang Dong Bai-Lin wang Yan-Xiang Sun Hui-Qin Zhang Jie-Wei Li Quan-Hui Mo Ying Zhang Xin Lou Hai-Xu Peng Ya-Ting Yi He-Xin wang Xiu-Jun Zhang Yi-Bo wang Dan wang Li Li Qiong Zhang Wen-Xia wang Yongbo Liu lei Gao Jin-Hu Wu Yan-Chang wang CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture Wuhan Botanical GardenChinese Academy of SciencesWuhanHubeiChina Key Laboratory of Western China’s Environmental Systems(Ministry of Education) College of Earth and Environmental SciencesLanzhou UniversityLanzhouGansuChina College of Life Sciences University of Chinese Academy of SciencesBeijingChina Wuhan Frasergen Bioinformatics Co. LtdWuhanHubeiChina Institute of Soil and Fertilizer Anhui Academy of Agricultural SciencesHefeiChina College of Agricultural Sciences Xichang UniversityXichangSichuanChina Department of Horticulture Heilongjiang Academy of Agricultural SciencesHarbinHeilongjiangChina College of Life Sciences Langfang Normal UniversityLangfangHebeiChina Institute of Horticulture Zhejiang Academy of Agricultural SciencesHangzhouZhejiangChina Guangxi Institute of Botany Chinese Academy of SciencesGuilinGuangxiChina Xi’an Botanical Garden of Shaanxi Province Institute of Botany of Shaanxi ProvinceXi’anShaanxiChina Institute of Modern Agricultural Research Dalian UniversityDalianLiaoningChina Bioinformatics Center College of Plant Science and TechnologyBeijing University of AgricultureBeijingChina College of Agriculture Eastern Liaoning UniversityDandongLiaoningChina Dalian Institute of Chemical Physics Chinese Academy of SciencesDalianLiaoningChina State Environmental Protection Key Laboratory of Regional Eco-process and Function Assessment Chinese Research Academy of Environmental SciencesBeijingChina Hubei Hongshan Laboratory WuhanHubeiChina The New Zealand Institute for Plant and Food Research Limited AucklandNew Zealand

Actinidia arguta,the most widely distributed Actinidia species and the second cultivated species in the genus,can be distinguished from the currently cultivated Actinidia chinensis on the basis of its small and smooth fruit,rapid softening,and excellent cold *** evolution of tetraploid Actinidia species and the genetic basis of their important agronomic traits are still ***,we generated a chromosome-scale genome assembly of an autotetraploid male *** *** genome assembly was 2.77 Gb in length with a contig N50 of 9.97 Mb and was anchored onto 116 *** and clustering of 101 geographically representative accessions showed that they could be divided into two geographic groups,Southern and Northern,which first diverged 12.9 million years *** underwent two prominent expansions and one demographic bottleneck from the midPleistocene climate transition to the late *** genomics studies using paleoclimate data enabled us to discern the evolution of the species’adaptation to different historical *** genes(AaCEL1,AaPME1,and AaDOF1)related to flesh softening were identified by multi-omics analysis,and their ability to accelerate flesh softening was verified through transient expression assays.A set of genes that characteristically regulate sexual dimorphism located on the sex chromosome(Chr3)or autosomal chromosomes showed biased expression during stamen or carpel *** chromosome-level assembly of the autotetraploid *** genome and the genes related to important agronomic traits will facilitate future functional genomics research and improvement of ***.

关键词： kiwiberry dioecism adaptive evolution paleoclimate GEA rapid softening

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Efficacy and safety of human umbilical cord-derived mesenchymal stem cells in the treatment of refractory immune thrombocytopenia:a prospective,single arm,phase I trial

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Signal Transduction and Targeted Therapy 2024年第5期9卷 2250-2259页

作者： Yunfei Chen Yanmei Xu Ying Chi Ting Sun Yuchen Gao Xueqing Dou Zhibo Han Feng Xue Huiyuan Li Wei Liu Xiaofan Liu huan Dong Rongfeng Fu Mankai Ju Xinyue Dai Wentian wang Yueshen Ma Zhen Song Jundong Gu Wei Gong Renchi Yang lei Zhang State Key Laboratory of Experimental Hematology National Clinical Research Centre for Blood DiseasesHaihe Laboratory of Cell EcosystemTianjin Key Laboratory of Gene Therapy for Blood DiseasesCAMS Key Laboratory of Gene Therapy for Blood DiseasesInstitute of Hematology&Blood Diseases HospitalChinese Academy of Medical Sciences&Peking Union Medical CollegeTianjin 300020China Tianjin Institutes of Health Science Tianjin 301600China National Clinical Research Center for Hematologic Diseases Jiangsu Institute of HematologyThe First Affiliated Hospital of Soochow UniversitySuzhou 215006China National Engineering Research Centre of Cell Products Tianjin Key Laboratory of Engineering Technologies for Cell PharmaceuticalAmCellGene Engineering Co.LtdTianjin 300457China School of Population Medicine and Public Health Chinese Academy of Medical Sciences and Peking Union Medical College100730 BeijingChina

Patients with refractory immune thrombocytopenia(ITP)frequently encounter substantial bleeding risks and demonstrate limited responsiveness to existing *** cord-derived mesenchymal stem cells(UC-MSCs)present a promising alternative,capitalizing on their low immunogenicity and potent immunomodulatory effects for treating diverse autoimmune *** prospective phase I trial enrolled eighteen eligible patients to explore the safety and efficacy of UC-MSCs in treating refractory *** research design included administering UC-MSCs at escalating doses of 0.5×10^(6)cells/kg,1.0×10^(6)cells/kg,and 2.0×10^(6)cells/kg weekly for four consecutive weeks across three cohorts during the dose-escalation phase,followed by a dose of 2.0×10^(6)cells/kg weekly for the dose-expansion *** events,platelet counts,and changes in peripheral blood immunity were monitored and recorded throughout the administration and follow-up ***,12(with an addition of three patients in the 2.0×10^(6)cells/kg group due to dose-limiting toxicity)and six patients were enrolled in the dose-escalation and dose-expansion phase,*** patients(13/18,72.2%)experienced one or more treatment emergent adverse *** adverse events occurred in four patients(4/18,22.2%),including gastrointestinal hemorrhage(2/4),profuse menstruation(1/4),and acute myocardial infarction(1/4).The response rates were 41.7%in the dose-escalation phase(5/12,two received 1.0×10^(6)cells/kg per week,and three received 2.0×10^(6)cells/kg per week)and 50.0%(3/6)in the dose-expansion *** overall response rate was 44.4%(8/18)among all enrolled *** sum up,UC-MSCs are effective and well tolerated in treating refractory ITP(*** ID:NCT04014166).

关键词： doses immunity treatment

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Plasmon-assisted mode selection lasing in a lanthanide-based microcavity

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Advanced Photonics 2024年第3期6卷 35-41页

作者： lei Guo Min Ji Bowen Kang Min Zhang Xin Xie Zihao Wu huan Chen Volker Deckert Zhenglong Zhang Shaanxi Normal University School of Physics and Information TechnologyXi’anChina Friedrich-Schiller University Leibniz Institute of Photonic TechnologyJenaGermany

Lanthanide-based microlasers have attracted considerable attention owing to their large anti-Stokes shifts,multiple emission bands,and narrow *** applications of microlasers,such as optical communication,optical storage,and polarization imaging,require selecting the appropriate laser polarization mode and remote control of the laser ***,we propose a unique plasmon-assisted method for the mode selection and remote control of microlasing using a lanthanide-based microcavity coupled with surface plasmon polaritons(SPPs)that propagate on a silver *** this method,the transverse electrical(TE)mode of microlasers can be easily separated from the transverse magnetic(TM)*** the SPPs excited on the silver microplate only support TM mode propagation,the reserved TE mode is resonance-enhanced in the microcavity and amplified by the local electromagnetic ***,lasingmode splitting can be observed under the near-field excitation of SPPs due to the coherent coupling between the microcavity and mirror microcavity *** from the long-distance propagation characteristics of tens of micrometers of SPPs on a silver microplate,remote excitation and control of upconversion microlasing can also be *** plasmon-assisted polarization mode-optional and remote-controllable upconversion microlasers have promising prospects in on-chip optoelectronic devices,encrypted optical information transmission,and high-precision sensors.

关键词： lanthanide-based microlaser surface plasmon polaritons polarization mode selection

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FPGA and computer-vision-based atom tracking technology for scanning probe microscopy

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Chinese Physics B 2024年第5期33卷 76-85页

作者：俞风度刘利王肃珂张新彪雷乐黄远志马瑞松郇庆 Beijing National Laboratory for Condensed Matter Physics Institute of PhysicsChinese Academy of SciencesBeijing 100190China University of Chinese Academy of Sciences Beijing 100049China ACME (Beijing) Technology Co. Ltd.Beijing 101407China Key Laboratory for Vacuum Physics University of Chinese Academy of SciencesBeijing 100190China

Atom tracking technology enhanced with innovative algorithms has been implemented in this study,utilizing a comprehensive suite of controllers and software independently developed *** an on-board field-programmable gate array(FPGA)with a core frequency of 100 MHz,our system facilitates reading and writing operations across 16 channels,performing discrete incremental proportional-integral-derivative(PID)calculations within 3.4 *** upon this foundation,gradient and extremum algorithms are further integrated,incorporating circular and spiral scanning modes with a horizontal movement accuracy of 0.38 *** integration enhances the real-time performance and significantly increases the accuracy of atom *** tracking achieves an equivalent precision of at least 142 pm on a highly oriented pyrolytic graphite(HOPG)surface under room temperature atmospheric *** applying computer vision and image processing algorithms,atom tracking can be used when scanning a large *** techniques primarily consist of two algorithms:the region of interest(ROI)-based feature matching algorithm,which achieves 97.92%accuracy,and the feature description-based matching algorithm,with an impressive 99.99%*** implementation approaches have been tested for scanner drift measurements,and these technologies are scalable and applicable in various domains of scanning probe microscopy with broad application prospects in the field of nanoengineering.

关键词： atom tracking FPGA computer vision drift measurement

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Development and validation of a nomogram for predicting in-hospital mortality of intensive care unit patients with liver cirrhosis

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World Journal of Hepatology 2024年第4期16卷 625-639页

作者： Xiao-Wei Tang Wen-Sen Ren Shu huang Kang Zou huan Xu Xiao-Min Shi Wei Zhang lei Shi Mu-Han Lü Department of Gastroenterology The Affiliated Hospital of Southwest Medical UniversityLuzhou 646099Sichuan ProvinceChina Nuclear Medicine and Molecular Imaging Key Laboratory The Affiliated Hospital of Southwest Medical UniversityLuzhou 646099Sichuan ProvinceChina Department of Gastroenterology Lianshui People’Hospital of Kangda College Affiliated to Nanjing Medical UniversityHuaian 223499Jiangsu ProvinceChina

BACKGROUND Liver cirrhosis patients admitted to intensive care unit(ICU)have a high mortality *** To establish and validate a nomogram for predicting in-hospital mortality of ICU patients with liver *** We extracted demographic,etiological,vital sign,laboratory test,comorbidity,complication,treatment,and severity score data of liver cirrhosis patients from the Medical Information Mart for Intensive Care IV(MIMIC-IV)and electronic ICU(eICU)collaborative research database(eICU-CRD).Predictor selection and model building were based on the MIMIC-IV *** variables selected through least absolute shrinkage and selection operator analysis were further screened through multivariate regression analysis to obtain final *** final predictors were included in the multivariate logistic regression model,which was used to construct a ***,we conducted external validation using the *** area under the receiver operating characteristic curve(AUC),decision curve,and calibration curve were used to assess the efficacy of the *** Risk factors,including the mean respiratory rate,mean systolic blood pressure,mean heart rate,white blood cells,international normalized ratio,total bilirubin,age,invasive ventilation,vasopressor use,maximum stage of acute kidney injury,and sequential organ failure assessment score,were included in the multivariate logistic *** model achieved AUCs of 0.864 and 0.808 in the MIMIC-IV and eICU-CRD databases,*** calibration curve also confirmed the predictive ability of the model,while the decision curve confirmed its clinical *** The nomogram has high accuracy in predicting in-hospital *** the included predictors may help improve the prognosis of patients.

关键词： Liver cirrhosis Intensive care unit Nomogram Predicting model Mortality

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基于麻雀搜索算法的ARAIM故障子集优化算法

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北京航空航天大学学报 2024年第7期50卷 2066-2073页

作者：王尔申王欢雷虹曾洪正曲萍萍庞涛沈阳航空航天大学电子信息工程学院沈阳110136 中国民用航空飞行学院飞行技术与飞行安全重点实验室广汉618307 电磁环境效应航空科技重点实验室沈阳110035

针对多假设解分离(MHSS)测试受卫星数目增加、潜在故障概率提高的影响,使得需要监测的子集数量增长而带来计算负担增加的问题,提出一种基于麻雀搜索算法(SSA)的高级接收机自主完好性监测(ARAIM)故障子集优化算法。结合SSA将可见卫星分... 详细信息

针对多假设解分离(MHSS)测试受卫星数目增加、潜在故障概率提高的影响,使得需要监测的子集数量增长而带来计算负担增加的问题,提出一种基于麻雀搜索算法(SSA)的高级接收机自主完好性监测(ARAIM)故障子集优化算法。结合SSA将可见卫星分配为发现者、跟随者和侦查预警者,通过剔除能量较低的个体降低计算冗余。在搜索过程中,引入自适应步长提升迭代速度,提高算法的执行效率。在双星座情况下,对完好性支持信息(ISM)参数进行3种假设,验证了所提算法的可用性,并与传统算法进行了对比分析。结果表明:通过所提算法得到的子集数量较传统算法减少了75%~90%,相同条件下,仿真用时降低了68%~88%,ARAIM可用性变化不超过2%。

关键词：高级接收机自主完好性监测双星座故障子集麻雀搜索算法完好性支持信息

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构建有限智库体系:一个技术治理视角

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自然辩证法研究 2024年第2期40卷 20-28,82页

作者：雷环捷中国社会科学院哲学研究所北京100732

关于中国智库发展史的回顾表明,现代意义上的智库在中国经历了从无到有、愈加重视的变迁过程,可分为思想库阶段和智库阶段,并呈现出自上而下、需求方主导的特征,还带来智库类别有欠多元等结构问题和研究力量分配不匀等功能问题。对此应... 详细信息

关于中国智库发展史的回顾表明,现代意义上的智库在中国经历了从无到有、愈加重视的变迁过程,可分为思想库阶段和智库阶段,并呈现出自上而下、需求方主导的特征,还带来智库类别有欠多元等结构问题和研究力量分配不匀等功能问题。对此应借助有限技术治理理论进行理论重构,将智库视为有限的专家政治,践行智库作为有限工具、智库作为制度力量、智库应当民主控制、智库应当容忍杂音、智库作为渐进工程、智库应当专家平衡等六条原则,构建一种可操作的有限智库体系,为建设中国特色新型智库添砖加瓦。

关键词：决策咨询智库体系思想库技术治理中国特色新型智库

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钛基石墨烯复合材料的分散性、界面结构及力学性能

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材料导报 2024年第5期38卷 234-241页

作者：佘欢时磊董安平上海应用技术大学机械工程学院上海201418 上海交通大学材料科学与工程学院上海200240 上海市先进高温材料及其精密成形重点实验室上海200240

石墨烯由于独特的结构和优异的力学、导电、润滑等性能,被认为是理想的金属基复合材料的增强体。将石墨烯作为增强体增强钛基复合材料有着巨大的应用潜力。然而,石墨烯的分散性及其与钛基体的反应是制约获得高性能石墨烯增强钛基复合材... 详细信息

石墨烯由于独特的结构和优异的力学、导电、润滑等性能,被认为是理想的金属基复合材料的增强体。将石墨烯作为增强体增强钛基复合材料有着巨大的应用潜力。然而,石墨烯的分散性及其与钛基体的反应是制约获得高性能石墨烯增强钛基复合材料的难点。本文综述了钛基石墨烯复合材料的分散性、界面及力学性能的研究进展。钛基石墨烯复合材料通常采用粉末冶金法制备,石墨烯能较均匀地分散于复合材料组织中,但当石墨烯添加量过多时仍会出现团聚现象。石墨烯与钛基体易发生反应生成TiC,通过固化烧结工艺的改进、基体复合化、石墨烯表面改性以及原位自生等方法可以有效地抑制界面反应并提高界面结合力。随着石墨烯含量的增加,钛基石墨烯复合材料的压缩、拉伸强度与硬度一般呈现先增大后减小的趋势。石墨烯增强钛基复合材料的强化机制通常以载荷传递强化为主,但有些情况下由石墨烯引起的位错强化、细晶强化及奥罗万(Orowan)强化效果也较为显著。

关键词：石墨烯钛基复合材料分散性界面强度强化机制

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Homozygous CCDC146 mutation causes oligoasthenoteratozoospermia in humans and mice

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Zoological Research 2024年第5期45卷 1073-1087页

作者： Jing-Wei Ye Tanveer Abbas Jian-Teng Zhou Jing Chen Meng-lei Yang Xiong-Heng huang huan Zhang Hui Ma Ao Ma Bo Xu Ghulam Murtaza Qing-Hua Shi Bao-Lu Shi Division of Reproduction and Genetics First Affiliated Hospital of University of Science and Technology of ChinaHefei National Laboratory for Physical Sciences at MicroscaleSchool of Basic Medical SciencesDivision of Life Sciences and MedicineBiomedical Sciences and Health Laboratory of Anhui ProvinceInstitute of Health and MedicineHefei Comprehensive National Science CenterUniversity of Science and Technology of ChinaHefeiAnhui 230026China Institute of Andrology Nanjing Drum Tower HospitalAffiliated Hospital of Nanjing University Medical SchoolNanjingJiangsu 210008China

Infertility represents a significant health concern,with sperm quantity and quality being crucial determinants of male ***(OAT)is characterized by reduced sperm motility,lower sperm concentration,and morphological abnormalities in sperm heads and *** variants in several genes have been implicated in OAT,its genetic etiologies and pathogenetic mechanisms remain inadequately *** this study,we identified a homozygous nonsense mutation(c.916C>T,***306*)in the coiled-coil domain containing 146(CCDC146)gene in an infertile male patient with *** mutation resulted in the production of a truncated CCDC146 protein(amino acids 1-305),retaining only two out of five coiled-coil *** validate the pathogenicity of the CCDC146 mutation,we generated a mouse model(Ccdc146^(mut/mut))with a similar mutation to that of the ***,the Ccdc146mut/mut mice exhibited infertility,characterized by significantly reduced sperm counts,diminished motility,and multiple defects in sperm heads and ***,the levels of axonemal proteins,including DNAH17,DNAH1,and SPAG6,were significantly reduced in the sperm of Ccdc146^(mut/mut) ***,both human and mouse CCDC146 interacted with intraflagellar transport protein 20(IFT20),but this interaction was lost in the mutated versions,leading to the degradation of *** study identified a novel deleterious homozygous nonsense mutation in CCDC146 that causes male infertility,potentially by disrupting axonemal protein *** findings offer valuable insights for genetic counseling and understanding the mechanisms underlying CCDC146 mutant-associated infertility in human males.

关键词： Oligoasthenoteratozoospermia Human infertility Sperm flagellum CCDC146 Intraflagellar transport IFT20

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Bifurcation analysis and control study of improved full-speed differential model in connected vehicle environment

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Chinese Physics B 2024年第7期33卷 245-266页

作者：艾文欢雷正清李丹洋方栋梁刘大为 College of Computer Science and Engineering Northwest Normal UniversityLanzhou 730070China College of Electrical Engineering Lanzhou Institute of TechnologyLanzhou 730050China

In recent years, the traffic congestion problem has become more and more serious, and the research on traffic system control has become a new hot spot. Studying the bifurcation characteristics of traffic flow systems and designing control schemes for unstable pivots can alleviate the traffic congestion problem from a new perspective. In this work, the full-speed differential model considering the vehicle network environment is improved in order to adjust the traffic flow from the perspective of bifurcation control, the existence conditions of Hopf bifurcation and saddle-node bifurcation in the model are proved theoretically, and the stability mutation point for the stability of the transportation system is found. For the unstable bifurcation point, a nonlinear system feedback controller is designed by using Chebyshev polynomial approximation and stochastic feedback control method. The advancement, postponement, and elimination of Hopf bifurcation are achieved without changing the system equilibrium point, and the mutation behavior of the transportation system is controlled so as to alleviate the traffic congestion. The changes in the stability of complex traffic systems are explained through the bifurcation analysis, which can better capture the characteristics of the traffic flow. By adjusting the control parameters in the feedback controllers, the influence of the boundary conditions on the stability of the traffic system is adequately described, and the effects of the unstable focuses and saddle points on the system are suppressed to slow down the traffic flow. In addition, the unstable bifurcation points can be eliminated and the Hopf bifurcation can be controlled to advance, delay, and disappear,so as to realize the control of the stability behavior of the traffic system, which can help to alleviate the traffic congestion and describe the actual traffic phenomena as well.

关键词： bifurcation analysis vehicle queuing bifurcation control Hopf bifurcation

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