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Phylogenetic and ecological reevaluation of the order Onygenales

Fungal Diversity 2022年第4期115卷 1-72页

作者： Hazal Kandemir Karolina Dukik Marcus de Melo Teixeira J.Benjamin Stielow Fatima Zohra delma Abdullah M.S.Al‑Hatmi Sarah A.Ahmed Macit Ilkit g.sybren de hoog Center of Expertise in Mycology Radboud University Medical Center/Canisius Wilhelmina HospitalNijmegenThe Netherlands Division of Medical Mycology Faculty of MedicineUniversity ofÇukurovaAdanaTurkey Westerdijk Fungal Biodiversity Institute UtrechtThe Netherlands Faculdade de Medicina Universidade de BrasíliaBrasíliaBrazil Pathogen and Microbiome Institute Northern Arizona UniversityFlagstaffUSA Thermo Fisher Scientific LandsmeerThe Netherlands Natural&Medical Sciences Research Center University of NizwaNizwaOman Key Laboratory of Environmental Pollution Monitoring and Disease Control Ministry of Education of Guizhou&Key Laboratory of Medical Microbiology and ParasitologySchool of Basic Medical SciencesGuizhou Medical UniversityGuiyangChina

The order Onygenales is classified in the class Eurotiomycetes of the subphylum *** in this order have classically been isolated from soil and dung,and two lineages contain causative agents of superficial,cutaneous and systemic infections in *** ecology and habitat choices of the species are driven mainly by the keratin and cellulose degradation *** present study aimed to investigate whether the ecological trends of the members of Onygenales can be interpreted in an evolutionary sense,linking phylogenetic parameters with habitat preferences,to achieve polyphasic definitions of the main taxonomic *** processes were estimated by multiple gene genealogies and divergence time *** described families,namely,Arthrodermataceae,Ajellomycetaceae,Ascosphaeraceae,Eremascaceae,gymnoascaceae,Onygenaceae and Spiromastigoidaceae,were accepted in Onygenales,and two new families,Malbrancheaceae and Neogymnomycetaceae,were introduced.A number of species could not be assigned to any of the defined *** study provides a revised overview of the main lines of taxonomy of Onygenales,supported by multilocus analyses of ITS,LSU,TUB,TEF1,TEF3,RPB1,RPB2,and ribosomal protein 60S L10(L1)(RP60S)sequences,combined with available data on ecology,physiology,morphology,and genomics.

关键词： Ancestral reconstruction Evolution Onygenales Taxonomy

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曲霉所致鼻面及鼻眶脑真菌病

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菌物学报 2020年第12期39卷 2218-2240页

作者：胡建刚李东明 g.sybren de hoog 北京大学第三医院皮肤科真菌实验室北京100191 Center of Expertise in Mycology of Radboud University Medical Center/Canisius Wilhelmina Hospital Nijmegenthe Netherlands

鼻面及鼻眶脑真菌病(rhinofacial and rhino-orbital-cerebral mycosis,ROCM)是一种病死率高的暴发性真菌感染疾病,主要由毛霉目、虫霉目、蛙粪霉目真菌引起。曲霉属真菌多引起真菌性鼻窦炎,如果侵入邻近的鼻、面、眼眶组织,真菌可能会... 详细信息

鼻面及鼻眶脑真菌病(rhinofacial and rhino-orbital-cerebral mycosis,ROCM)是一种病死率高的暴发性真菌感染疾病,主要由毛霉目、虫霉目、蛙粪霉目真菌引起。曲霉属真菌多引起真菌性鼻窦炎,如果侵入邻近的鼻、面、眼眶组织,真菌可能会延伸到颅底和/或神经系统,从而危及生命。由于该类感染早期临床表现缺乏特异性,误诊率可能较高;此外,对曲霉的有效抗真菌治疗与其他真菌的抗真菌治疗有很大的不同。本文对PubMed和中文文献数据库的相关文献进行了系统的Meta分析,全面总结了引起ROCM的相关曲霉菌种类、分布、危险因素、临床表现、诊断和治疗。

关键词：曲霉曲霉病鼻眶脑真菌病鼻面真菌病皮肤和皮肤结构感染

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Chaetomium-like fungi causing opportunistic infections in humans:a possible role for extremotolerance

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Fungal Diversity 2016年第1期76卷 11-26页

作者： Sarah A.Ahmed Ziauddin Khan Xue-wei Wang Tarek A.A.Moussa Hassan S.Al-Zahrani Omar A.A.lmaghrabi deanna A.Sutton S.Ahmad Johannes Z.groenewald A.Alastruey-Izquierdo Anne van Diepeningen S.B.J.Menken M.J.Najafzadeh Pedro W.Crous Oliver Cornely Axel Hamprecht Maria J.g.T.Vehreschild A.J.Kindo g.sybren de hoog Faculty of Medical Laboratory Sciences University of KhartoumKhartoumSudan CBS-KNAW Fungal Biodiversity Centre P.O.Box 851673508 AD UtrechtThe Netherlands Institute for Biodiversity and Ecosystem Dynamics University of AmsterdamAmsterdamThe Netherlands department of Microbiology Faculty of MedicineKuwait UniversityKuwaitKuwait State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijingChina Biological Sciences department Faculty of ScienceKing Abdulaziz UniversityJeddahSaudi Arabia Botany and Microbiology department Faculty of ScienceCairo UniversityGizaEgypt Fungus Testing Laboratory Department of PathologyUniversity of Texas Health Science Center at San AntonioSan AntonioTXUSA Mycology Reference Laboratory National Centre for MicrobiologyCarlos III Institute of Health(Servicio deMicologíaCentro Nacional de MicrobiologíaInstituto de Salud Carlos III)MadridSpain department of Parasitology and Mycology Mashhad University of Medical SciencesMashhadIran german Centre for Infection Research(DZIF)at Cologne/Bonn First Department of Internal MedicineUniversity Hospital of CologneCologneGermany Institute for Medical Microbiology Immunology and HygieneUniversity of CologneCologneGermany department of Microbiology Sri Ramachandra UniversityPorurChennaiIndia Peking University Health Science Center Research Center for Medical MycologyBeijingChina Sun Yat-Sen Memorial Hospital Sun Yat-Sen UniversityGuangzhouChina Shanghai Institute of Medical Mycology Changzheng HospitalSecond Military Medical UniversityShanghaiChina 17 Basic Pathology DepartmentFederal University of ParanáStateCuritibaParanáBrazil

Members of the family Chaetomiaceae are ubiquitous ascosporulating fungi commonly,which reside in soil enriched with manure or cellulosic *** role as human pathogens is largely ***,the ability of some species to grow at high temperature enables them to play an important role as opportunistic *** family contains several genera and species that have never been reported to cause human ***,three new species are described;two belong to the genus Subramaniula and one represents a Chaetomium *** asteroides was isolated from various sources including eye and skin infections as well as from the natural environment,and *** was isolated from a toe *** anamorphosum was isolated from a kidney transplant patient suffering from fungal *** species described were previously misidentified as Papulaspora *** to the formation of cellular clumps or bulbil-like structures,which are characteristic of *** isolates failed to form sexual fruit bodies and ascospores remained absent,which is an unusual feature for the generally ascosporulating genera Chaetomium and Subramaniula;minute conidia from phialides were sometimes observed.

关键词： Chaetomium desert fungi Keratitis Papulaspora Peritonitis Sterile fungi Subramaniula

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Correction to:Proposed nomenclature for Pseudallescheria,Scedosporium and related genera

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Fungal Diversity 2022年第2期113卷 193-194页

作者： Michaela Lackner g.sybren de hoog Liyue Yang Leandro Ferreira Moreno Sarah A.Ahmed Fritz Andreas Josef Kaltseis Markus Nagl Cornelia Lass-Florl Brigitte Risslegger gunter Rambach Cornelia Speth Vincent Robert Walter Buzina Sharon Chen Jean-Philippe Bouchara Jose F.Cano-Lira Josep guarro Josepa gene Fabiola Fernandez Silva Rosa Haido gerhard Haase Vladimir Havlicek dea garcia-Hermoso Jacques F.Meis Ferry Hagen Martin Kirchmair Johannes Rainer Katharina Schwabenbauer Mirjam Zoderer Wieland Meyer Felix gilgado Vania A.Vicente Elena Pieckova Monika Regenermel Peter-Michael Rath Joerg Steinmann Xisto Wellington de Alencar Françoise Symoens Kathrin Tintelnot Krzysztof Ulfig Aristea Velegraki Anna Maria Tortorano Sandrine giraud Sara Mina Kinga Rigler-Hohenwarter Fernando L.Hernando Andoni Ramirez-garcia Aize Pellon Jashanpreet Kaur Eliana Barreto Bergter Jardel Vieira de Meirelles Ingrid Dutra da Silva Laurence delhaes Ana Alastruey-Izquierdo Ruo-yu Li Qiaoyun Lu Tarek Moussa Omar Almaghrabi Hassan Al-Zahrani gen Okada Shuwen deng Wangqing Liao Jingsi Zeng Jouni Issakainen Livia Cristina Liporagi Lopes Division of Hygiene and Medical Microbiology Innsbruck Medical UniversityInnsbruckAustria CBS Fungal Biodiversity Centre UtrechtThe Netherlands Institute for Biodiversity and Ecosystem Dynamics University of AmsterdamAmsterdamThe Netherlands Sun Yat-Sen Memorial Hospital Sun Yat-Sen UniversityGuangzhouChina Medical University of graz GrazAustria Centre for Infectious Diseases and Microbiology Westmead HospitalWestmeadAustralia Laboratoire de Parasitologie-Mycologie Centre Hospitalier UniversitaireAngersFrance Unitats de Microbiologia i d’Anatomia Patologica Facultat de Medicina i Ciencies de la Salut IISPVUniversitat Rovira i VirgiliReusSpain Universidade Federal do Estado do Rio de Janeiro Rio de JaneiroBrazil Institute of Medical Microbiology University Hospital RWTHAachenGermany Institute of Microbiology Academy of SciencesPragueCzech Republic Institut Pasteur Unite de Mycologie MoleculaireCentre National de Reference Mycoses Invasives et AntifongiquesParisFrance department of Medical Microbiology and Infectious Diseases Canisius-Wilhelmina HospitalNijmegenThe Netherlands department of Medical Microbiology RadboudumcNijmegenThe Netherlands Institute of Microbiology eopold-Franzens-University InnsbruckInnsbruckAustria Molecular Mycology Research Laboratory Centre for Infectious Diseases and MicrobiologySydneyMedical School—Westmead HospitalMarie Bashir Institute for Infectious Diseases and BiosecurityThe University of SydneyWestmead Millennium InstituteWestmeadNSWAustralia Basic Pathology department Federal University of Parana StateCuritibaParanaBrazil Fellowship from Conselho Nacional de desenvolvimento Cientifico e Tecnologico(CNPq) BrasiliaBrazil Institute of Preventive and Clinical Medicine BratislavaSlovakia Institut für Hygiene und Mikrobiologie Landesklinikum St.Pölten St.PoltenAustria Institute of Medical Microbiology University Hospital EssenEssenGermany Nursing School of Unigranrio Rio de JaneiroBrazil Scientific Institute of Public Health Culture Collect

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Proposed nomenclature for Pseudallescheria,Scedosporium and related genera

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Fungal Diversity 2014年第4期67卷 1-10页

作者： Michaela Lackner g.sybren de hoog Liyue Yang Leandro Ferreira Moreno Sarah A.Ahmed Fritz Andreas Josef Kaltseis Markus Nagl Cornelia Lass-Florl Brigitte Risslegger gunter Rambach Cornelia Speth Vincent Robert Walter Buzina Sharon Chen Jean-Philippe Bouchara Jose F.Cano-Lira Josep guarro Josepa gené Fabiola Fernández Silva Rosa Haido gerhard Haase Vladimir Havlicek dea garcia-Hermoso Jacques F.Meis Ferry Hagen Martin Kirchmair Johannes Rainer Katharina Schwabenbauer Mirjam Zoderer Wieland Meyer Felix gilgado Vania A.Vicente Elena Piecková Monika Regenermel Peter-Michael Rath Joerg Steinmann Xisto Wellington de Alencar Francoise Symoens Kathrin Tintelnot Krzysztof Ulfig Aristea Velegraki Anna Maria Tortorano Sandrine giraud Sara Mina Kinga Rigler-Hohenwarter Fernando L.Hernando Andoni Ramirez-garcia Aize Pellon Jashanpreet Kaur Eliana Barreto Bergter Jardel Vieira de Meirelles Ingrid Dutra da Silva Laurence delhaes Ana Alastruey-Izquerdo Ruo-yu Li Qiaoyun Lu Tarek Moussa Omar Almaghrabi Hassan Al-Zahrani gen Okada Shuwen deng Wangqing Liao Jingsi Zeng Jouni Issakainen Livia Cristina Liporagi Lopes Division of Hygiene and Medical Microbiology Innsbruck Medical UniversityInnsbruckAustria CBS Fungal Biodiversity Centre UtrechtThe Netherlands Institute for Biodiversity and Ecosystem Dynamics University of AmsterdamAmsterdamThe Netherlands Sun Yat-Sen Memorial Hospital Sun Yat-Sen UniversityGuangzhouChina Medical University of graz GrazAustria Centre for Infectious Diseases and Microbiology Westmead HospitalWestmeadAustralia Laboratoire de Parasitologie-Mycologie Centre Hospitalier UniversitaireAngersFrance Unitats de Microbiologia i d’Anatomia Patològica Facultat de Medicina i Ciències de la Salut IISPVUniversitat Rovira i VirgiliReusSpain Universidade Federal do Estado do Rio de Janeiro Rio de JaneiroBrazil Institute of Medical Microbiology University Hospital RWTHAachenGermany Institute of Microbiology Academy of SciencesPragueCzech Republic Institut Pasteur Unitéde Mycologie MoléculaireCentre National de Référence Mycoses Invasives et AntifongiquesParisFrance department of Medical Microbiology and Infectious Diseases Canisius-Wilhelmina HospitalNijmegenThe Netherlands department of Medical Microbiology RadboudumcNijmegenThe Netherlands Institute of Microbiology eopold-Franzens-University InnsbruckInnsbruckAustria Molecular Mycology Research Laboratory Centre for Infectious Diseases and MicrobiologySydneyMedical School—Westmead HospitalMarie Bashir Institute for Infectious Diseases and BiosecurityThe University of SydneyWestmead Millennium InstituteWestmeadNSWAustralia Basic Pathology department Federal University of ParanáStateCuritibaParanáBrazil Fellowship from Conselho Nacional de desenvolvimento Científico e Tecnológico(CNPq) BrasíliaBrazil Institute of Preventive and Clinical Medicine BratislavaSlovakia Institut für Hygiene und Mikrobiologie Landesklinikum St.Pölten St.PöltenAustria Institute of Medical Microbiology University Hospital EssenEssenGermany Nursing School of Unigranrio Rio de JaneiroBrazil Scientific Institute of Public Health Culture Collectio

As a result of fundamental changes in the International Code of Nomenclature on the use of separate names for sexual and asexual stages of fungi,generic names of many groups should be *** of the ECMM/ISHAM working group on Pseudallescheria/Scedosporium infections herein advocate a novel nomenclature for genera and species in Pseudallescheria,Scedosporium and allied *** generic names Parascedosporium,Lomentospora,Petriella,Petriellopsis,and Scedosporium are proposed for a lineage within Microascaceae with mostly Scedosporium anamorphs producing slimy,annellidic *** that Scedosporium has priority over Pseudallescheria and that Scedosporium prolificans is phylogenetically distinct from the other Scedosporium species,some name changes are *** minutispora and Petriellidium desertorum are renamed as Scedosporium minutisporum and ***,*** prolificans is renamed as Lomentospora prolificans.

关键词： graphium Lomentospora Petriella Scedosporium apiospermum complex Microascaceae Nomenclature

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Naming and outline of Dothideomycetes-2014 including proposals for the protection or suppression of generic names

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Fungal Diversity 2014年第6期69卷 1-55页

作者： Nalin N.Wijayawardene Pedro W.Crous Paul M.Kirk David L.Hawksworth Saranyaphat Boonmee Uwe Braun Dong-Qin Dai Melvina J.D’souza Paul Diederich Asha Dissanayake Mingkhuan Doilom Singang Hongsanan E.B.gareth Jones Johannes Z.groenewald Ruvishika Jayawardena James D.Lawrey Jian-Kui Liu Robert Lücking Hugo Madrid Dimuthu S.Manamgoda Lucia Muggia Matthew P.Nelsen Rungtiwa Phookamsak Satinee Suetrong Kazuaki Tanaka Kasun M.Thambugala Dhanushka N.Wanasinghe Saowanee Wikee Ying Zhang Andre Aptroot H.A.Ariyawansa Ali H.Bahkali D.Jayarama Bhat Cécile gueidan Putarak Chomnunti g.sybren de hoog Kerry Knudsen Wen-Jing Li Eric H.C.McKenzie Andrew N.Miller Alan J.L.Phillips Marcin Piatek Huzefa A.Raja Roger S.Shivas Bernad Slippers Joanne E.Taylor Qing Tian Yong Wang Joyce H.C.Woudenberg Lei Cai Walter M.Jaklitsch Kevin D.Hyde Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China World Agroforestry Centre East and Central AsiaKunming 650201YunnanPeople’s Republic of China Institute of Excellence in Fungal Research Chiang Rai 57100Thailand Forestry and Agricultural Biotechnology Institute(FABI) University of PretoriaPretoria 0002South Africa CBS-KNAW Fungal Biodiversity Centre Uppsalalaan 83584 CT UtrechtThe Netherlands State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing100101People_s Republicof China Mycology Section Royal Botanic GardensKewRichmondSurrey TW93DSUK department of Life Sciences The Natural History MuseumCromwell RoadLondon SW75BDUK departamento de Biología VegetalⅡ Facultad de FarmaciaUniversidad Complutense de MadridPlaza Ramón y CajalMadrid 28040Spain School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Institut Für Biologie Martin-Luther-UniversitatBereich Geobotanik Und Botanischer GartenHerbariumNeuwerk 2106099 Halle(Saale)Germany Musée National d'histoire Naturelle 25 Rue MunsterL-2160 LuxembourgLuxembourg Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesBeijing 100097People’s Republic of China department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box 2455Riyadh 11451Kingdom of Saudi Arabia department of Environmental Science and Policy George Mason University4400 University DriveFairfaxVA 22030-4444USA Science and Education Integrative Research(Botany)The Field Museum1400 South Lake Shore DriveChicagoIL 60605-2496USA Institute of Plant Sciences University of GrazHolteigasse 68010GrazAustria department of Life Science University of TriesteVia L.Giorgieri 10TriesteItaly Committee on Evolutionary Biology University of Chicago1025 E.57th StreetChicagoIL 60637USA Fungal Biodiversity Laboratory(BFBD) National Center for Gen

Article 59.1,of the International Code of Nomenclature for Algae,Fungi,and Plants(ICN;Melbourne Code),which addresses the nomenclature of pleomorphic fungi,became effective from 30 July *** that date,each fungal species can have one nomenclaturally correct name in a particular *** other previously used names for this species will be considered as *** older generic epithet takes priority over the younger *** widely used younger names proposed for use,must comply with Art.57.2 and their usage should be approved by the Nomenclature Committee for Fungi(NCF).In this paper,we list all genera currently accepted by us in Dothideomycetes(belonging to 23 orders and 110 families),including pleomorphic and nonpleomorphic *** the case of pleomorphic genera,we follow the rulings of the current ICN and propose single generic names for future *** taxonomic placements of 1261 genera are listed as an *** names and suppressed names for 34 pleomorphic genera are listed *** and justifications are provided for possible proposed names after the list of *** are also provided on recent advances in our understanding of asexual and sexual morph linkages in Dothideomycetes.A phylogenetic tree based on four gene analyses supported 23 orders and 75 families,while 35 families still lack molecular data.

关键词： Article 59.1 Ascomycota One name Phylogeny Pleomorphism

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Ecology and phylogeny of black yeast-like fungi: diversity in unexplored habitats

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Fungal Diversity 2014年第2期65卷 1-2页

作者： g.S.de hoog Centraalbureau voor Schimmelcultures KNAW Fungal Biodiversity CentreP.O.Box 851673508 AD UtrechtThe Netherlands

The known biodiversity of black yeasts and their allies has exploded over the last *** even applies to medically significant genera such as Exophiala and Cladophialophora,where the number of accepted species has grown since the 1990s of the previous century from 9 to 44 and from 5 to 34,respectively.A first source of change no doubt is dissection of many supposed ubiquitous generalists into series of narrowly circumscribed molecular siblings,which often appear to be specialists with ecological preferences differing significantly between *** early example of subdivision of classical species in black yeasts,using DNA homology techniques,concerned Exophiala *** of its siblings today is known to be a biofilm former in drinking water networks,while *** sensu stricto is thus far only known from subcutaneous infections in humans.

关键词： habitat phylogeny black

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Fungi between extremotolerance and opportunistic pathogenicity on humans

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Fungal Diversity 2018年第6期93卷 195-213页

作者： Cene gostincar Janja Zajc Metka Lenassi Ana Plemenitas sybren de hoog Abdullah M.S.Al-Hatmi Nina gunde-Cimerman department of Biology Biotechnical FacultyUniversity of LjubljanaJamnikarjeva 1011000 LjubljanaSlovenia department of Molecular and Biomedical Sciences Jozˇef Stefan InstituteJamova 391000 LjubljanaSlovenia National Institute of Biology Vecˇna pot 1111000 LjubljanaSlovenia Institute of Biochemistry Faculty of MedicineUniversity of LjubljanaVrazov trg 21000 LjubljanaSlovenia Westerdijk Fungal Biodiversity Institute UtrechtThe Netherlands Center of Expertise in Mycology of RadboudUMC/Canisius Wilhelmina Ziekenhuis NijmegenThe Netherlands Directorate general of Health Services IbriOman

Numerous agents of infections in humans and other mammals are found among fungi that are able to survive extreme environmental conditions and to quickly adapt to novel ***,the relationship between opportunistic potential and polyextremotolerance was not yet studied systematically in ***,the link between polyextremotolerance and opportunistic pathogenicity is shown in a kingdom-wide phylogenetic analysis as a statistically significant co-occurrence of extremotolerance(*** and psychrotolerance)and opportunism at the level of fungal *** addition to extremotolerance,fungal opportunists share another characteristic—an apparent lack of specialised virulence *** is illustrated by a comparative genomic analysis of 20 dothideomycetous and eurotiomycetous black *** the genomes of specialised fungal plant pathogens were significantly enriched in known virulence-associated genes that encode secreted proteases,carbohydrate active enzyme families,polyketide synthases,and non-ribosomal peptide synthetases,no such signatures were observed in human *** the presented results have several *** infection of human hosts is a side effect of fungal stress tolerance and adaptability,the human body is most likely neither the preferred habitat of such species,nor important for their evolutionary *** defines opportunism as opposed to pathogenicity,where infection is advantageous for the species’*** opportunists are generally incapable of the host-to-host transmission,any host-specific adaptations are likely to be lost with the resolution of the infection,explaining the observed lack of specialised virulence *** this scenario opportunistic infections should be seen as an evolutionary dead end and unlikely to lead to true pathogenicity.

关键词： Virulence factor Extremotolerance Stress tolerance Mycosis Opportunistic infection Black yeast

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global ITS diversity in the Sporothrix schenckii complex

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Fungal Diversity 2014年第3期66卷 153-165页

作者： Xun Zhou Anderson M.Rodrigues Peiying Feng g.S.de hoog department of dermatology Affiliated Hospital of Chongqing Medical UniversityChongqingChina Centraalbureau voor Schimmelcultures KNAW Fungal Biodiversity Centre PO Box 851673508 AD UtrechtThe Netherlands department of Microbiology Immunology and Parasitology-DMIPCellular Biology DivisionFederal University of São Paulo-UNIFESPSão PauloBrazil Third Affiliated Hospital Sun Yat-sen UniversityGuangzhouChina Sun Yat-Sen Memorial Hospital Sun Yat-Sen UniversityGuangzhouChina Institute for Biodiversity and Ecosystem Dynamics University of AmsterdamAmsterdamThe Netherlands Peking University Health Science Center Research Center for Medical MycologyBeijingChina

Molecular phylogeny has revealed that sporotrichosis is caused by several Sporothrix species which differ in clinical *** complex is embedded within Ophiostoma,a genus mainly comprising fungi that live in association with bark beetles,but differs by a high virulence towards humans and other *** different ecology is corroborated by phylogenetic *** aim of the present study was to determine the validity of the rDNA internal transcribed spacer(ITS)region as a marker for diagnostics of species in the clinical group,using betatubulin sequences to calibrate species *** topology of the two gene trees was concordant,and all clinically relevant Sporothrix species could easily be recognized by means of the ITS *** increased geographic sampling did not affected delimitation success in the clinical clade of the *** complex.

关键词： Sporothrix schenckii Sporotrichosis Taxonomy Phylogeny ITS Barcoding

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A multigene phylogeny reveals that Ochroconis belongs to the family Sympoventuriaceae (Venturiales,Dothideomycetes)

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Fungal Diversity 2014年第2期65卷 77-88页

作者： M.Machouart K.Samerpitak g.S.de hoog C.gueidan Service de Parasitologie-Mycologie CHU de NancyHôpital Brabois11 allée du Morvan54511 Vandoeuvre-les-NancyFrance CBS-KNAW Fungal Biodiversity Centre P.O.Box 851673508 AD UtrechtThe Netherlands department of Microbiology Faculty of MedicineKhon Kaen University123 Mittraparp HighwayMuang DistrictKhon Kaen 40002Thailand department of Life Sciences Division of Genomic&Microbial DiversityThe Natural History MuseumCromwell roadLondon SW75BDUnited Kingdom

Ochroconis is a genus of ascomycete fungi that includes oligotrophic saprobes and some opportunistic species causing infections in *** most important of these opportunists is the neurotropic species Ochroconis gallopava,which occurs in birds and occasionally in immunocompromised *** Ochroconis species have been isolated from superficial infections of cats,dogs and *** their natural environment,these species are found in litter,soil,and on moist *** thermophilic species have been isolated from hot springs,industrial effluents,and self-heated plant *** their ecology and epidemiology has been investigated,their classification within the ascomycetes is still ***,the phylogenetic placement of Ochroconis is investigated using a four-gene phylogeny(nuLSU,nuSSU,mtSSU and RPB2).The results show that Ochroconis and its recently described sister genus Verruconis belong to the order Venturiales(Dothideomycetes)and are nested within the Sympoventuriaceae,a family recently erected for a group of plant-saprobes or-pathogens sister to the *** form a well-supported monophyletic group together with five species of the anamorphic genus Fusicladium isolated from leaf and needle litters.

关键词： Dactylaria Fusicladium Classification Molecular phylogenetics Opportunistic vertebrate pathogens

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