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Species delimitation based on diagnosis and monophyly, and its importance for advancing mammalian taxonomy

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Zoological Research 2018年第5期39卷 301-308页

作者： eliécer e.gutiérrez Guilherme S.T.Garbino Pós-Graduacao em Biodiversidade Animal Departamento de Ecologia e Evolucao Centro de Ciências Naturais e Exatas Universidade Federal de Santa Maria Santa Maria RS 97105-900 Brazil Division of Mammals National Museum of Natural History Smithsonian Institution Washington DC 20013-7012 USA Pós-graduacao Departamento de Zoologia Instituto de Ciências Biológicas Universidade Federal de Minas Gerais Belo Horizonte Minas Gerais 31270-901 Brazil

A recently proposed taxonomic classification of extant ungulates sparked a series of publications that criticize the Phylogenetic Species Concept （PSC） claiming it to be a particularly poor species *** opinions reiteratively stated that （1） the two fundamental elements of the ＂PSC＂,i.e.,monophyly and diagnosability,do not offer objective criteria as to where the line between species should be drawn;and （2） that extirpation of populations can lead to artificial diagnosability and spurious recognitions of *** sudden eruption of criticism against the PSC is *** attributed to the PSC are common to most approaches and concepts that modern systematists employ to establish species *** controversial taxonomic propositions that sparked criticism against the PSC are indeed highly problematic,not because of the species concept upon which they are based,but because no evidence （whatsoever） has become public to support a substantial portion of the proposed *** herein discuss these topics using examples from *** areas of biological research rest upon taxonomic accuracy （including conservation biology and biomedical research）;hence,it is necessary to clarify what are （and what are not）the real sources of taxonomic inaccuracy.

关键词： Alpha taxonomy Phylogenetic SpeciesConcept Species concepts Taxonomic inertia Taxonomic inflation

Identification of plant genes putatively involved in the perception of fungal ergosterol-squalene^∞

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Journal of Integrative Plant Biology 2020年第7期62卷 927-947页

作者： Laura Lindo Rosa e.Cardoza Alicia Lorenzana Pedro A.Casquero Santiago gutiérrez Area of Microbiology University of LeónCampus of PonferradaPonferradaSpain University Group of Research in engineering and Sustainable Agriculture University of LeónLeónSpain

Trichoderma biocontrol strains establish a complex network of interactions with plants,in which diverse fungal molecules are involved in the recognition of these fungi as nonpathogenic *** molecules act as microbial-associated molecular patterns that trigger plant *** studies have reported the im-portance of ergosterol produced by Trichoderma *** the ability of these fungi to induce plant growth and *** addition,squalene,a sterol biosynthetic inter-mediate,seems to play an important role in these ***,we analyzed the effect of different concentrations of ergosterol and squalene on tomato(Solanum lycopersicum)growth and on the transcription level of defense-and growth-related *** used an RNA-seq strategy to identify several tomato genesencoding predicted pattern recognition receptor proteins or WRKY transcription factors,both of which are puta-tively involved in the perception and response to ergo-sterol and ***,an analysis of Arabidopsis thaliana mutants lacking the genes homologous to these tomato candidates led to the identification of a WRKY40 transcription factor that negatively regulates salicylic acid-related genes and positively regulates ethylene-and jasmonate-related genes in the presence of ergosterol and squalene.

关键词： plant perception pattern

Alternatives of Small-Scale Biorefineries for the Integrated Production of Xylitol from Sugarcane Bagasse

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Journal of Renewable Materials 2018年第2期6卷 139-151页

作者： Nicolás M.Clauser Soledad gutiérrez María C.Area Fernando e.Felissia María e.Vallejos Materials Institute of Misiones(IMAM) National University of Misiones–National Council of Scientific and Technical Research(UNaM–CONICET)1552 Félix de Azara St.(3300)PosadasMisionesArgentina Faculty of engineering University of the Republic(UDeLaR)565 Julio Herrera y Reissig St.(11700)MontevideoUruguay

Small-scale biorefinery from sugarcane bagasse offers new possibilities to the sugar and ethanol *** aim of this study was to evaluate the feasibility of a small-scale biorefinery for the production of xylitol from sugarcane *** liquid fraction from the autohydrolysis treatment was selected as the source of sugars for xylitol and two scenarios were analyzed for the residual solid:ethanol or pellet production.A technical-economic analysis of alternatives was *** internal rate of return(IRR)was used to compare the selected *** highest IRR values were obtained when processing 70,000 dry tons per year of *** results showed promising prospects for a small-scale biorefinery with capacities above 20,000 dry tons per year(xylitol and pellets),and above 50,000 dry tons per year(xylitol and ethanol).

关键词： Biorefinery sugarcane bagasse xylitol ethanol pellets

Prediction of seakeeping in the early stage of conventional monohull vessels design using artificial neural network

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Journal of Ocean engineering and Science 2023年第4期8卷 344-366页

作者： P.Romero-Tello J.e.gutiérrez-Romero B.Serván-Camas Departamento de Física Aplicada y Tecnología Naval Universidad Politécnica de Cartagena(UPCT)CartagenaMurciaSpain Centre Internacional de Mètodes Numèrics en enginyeria(CIMNe) BarcelonaSpain

Nowadays seakeeping is mostly analyzed by means of model testing or numerical *** require a significant amount of time and the exact hull geometry,and therefore seakeeping is not taken into account at the early stages of ship *** the main objective of this work is the development of a seakeeping prediction tool to be used in the early stages of ship *** tool must be fast,accurate,and not require the exact hull *** this end,an artificial intel-ligence(AI)algorithm has been *** algorithm is based on Artificial Neural Networks(ANNs)and only requires a number of ship coefficients of *** methodology developed to obtain the predictive algorithm is presented as well as the database of ships used for training the *** data were generated using a frequency domain seakeeping code based on the boundary element method(BeM).Also,the AI predictions are compared to the BeM results using both,ship hulls included and not included in the *** a result of this work it has been obtained an AI tool for seakeeping prediction of conventional monohull vessels.

关键词： artificial neural database

enhancing perianal disease management with integrated physical and psychological approaches

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World Journal of Clinical Cases 2025年第2期13卷 59-63页

作者： Uchenna e Okpete Haewon Byeon Department of Digital Anti-aging Healthcare(BK21) Inje UniversityGimhae 50834South Korea

This article provides a comprehensive analysis of the study by Hou et al,focusing on the complex interplay between psychological and physical factors in the postoperative recovery(POR)of patients with perianal *** study sheds light on how illness perception,anxiety,and depression significantly influence recovery *** et al developed a predictive model that demonstrated high accuracy in identifying patients at risk of poor *** article explores the critical role of pre-operative psychological assessment,highlighting the need for mental health support and personalized recovery plans in enhancing POR quality.A multidisciplinary approach,integrating mental health professionals with surgeons,anesthesiologists,and other specialists,is emphasized to ensure comprehensive care for *** study’s findings serve as a call to integrate psychological care into surgical practice to optimize outcomes for patients with perianal diseases.

关键词： Perianal disease Post-operative recovery Anxiety Depression Pain management emotional well-being Multidisciplinary approach

Lanthanide molecular nanomagnets as probabilistic bits

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npj Computational Materials 2023年第1期9卷 322-330页

作者： Gerliz M.gutiérrez-Finol Silvia Giménez-Santamarina Ziqi Hu Lorena e.Rosaleny Salvador Cardona-Serra Alejandro Gaita-Ariño Instituto de Ciencia Molecular(ICMol) Universitat de ValènciaPaternaSpain Department of Materials Science and engineering CAS Key Laboratory of Materials for Energy ConversionAnhui Laboratory of Advanced Photon Science and TechnologyUniversity of Science and Technology of China230026 HefeiPeople’s Republic of China

Over the decades,the spin dynamics of a large set of lanthanide complexes have been ***-based molecular nanomagnets are bistable spin systems,generally conceptualised as classical bits,but many lanthanide complexes have also been presented as candidate quantum bits(qubits).Here,we offer a third alternative and model them as probabilistic bits(p-bits),where their stochastic behaviour constitutes a computational resource instead of a *** an ad-hoc modelling tool for molecular spin p-bits and molecular nanomagnets,we simulate a minimal p-bit network under realistic ***,we go back to a recently published dataset and screen the best lanthanide complexes for p-bit behaviour,lay out the performance of the different lanthanide ions and chemical families and offer some chemical design considerations.

关键词： lanthanide magnets Lanthanide

Intruder familiarity and not duet similarity influences the territory defense in a year-round territorial bird species

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Avian Research 2022年第2期13卷 152-158页

作者： Tihana Hamzaj Brendan Graham Katherine Bonilla Ignacio gutiérrez Luis Sandoval Institute of evolutionary ecology and Conservation Genomics University of UlmUlm Gemany Laboratorio de ecología Urbana y Comunicación Animal Escuela de BiologíaUniversidad de Costa RicaMontes de Oca CP11501-2060 Costa Rica Department of Biological Sciences University of Lethbridge4401 University Dr WLethbridgeABTIK 3M4anada

To avoid unnecessary energy expenditures in territorial defense,many species(e.g.,insects,amphibians,birds,and mammals)have developed the capability to distinguish between different intruder types using visual,acoustic,and/or chemical *** the mechanism used for intruder recognition is key to understanding the dynamics of territorial *** birds that use vocalizations for territorial defense,the frequency and duration of vocalizations or the familiarity with the intruder may be the main mechanism used for intruder ***,we conducted a playback experiment with territorial White-eared Ground-sparrows(Melozone leucotis),to analyze if territorial pairs recognize intruders using frequency and duration characteristics(a bird’s response is based on how structurally similar the intruders’duets are to their own)or by familiarity with the intruders(neighbors ***-neighbors).We focused on duets because this species uses duets exclusively for territorial *** broadcasted a duet from a territorial neighbor,two duets from non-neighbors(with different frequency and duration characteristics),and a duet from a control species in 39 territorial pair from three *** playback we measured five behavioral responses:latency of the first vocalization,latency of the approach to the speaker,time spent close the speaker(within 5 m),number of individuals that approached the speaker,and the number of *** found that territorial White-eared Ground-sparrow pairs responded stronger to neighbors than non-neighbors,and this response is not influenced by duet duration or frequency *** result suggests that neighbors represent a greater territorial threat for White-eared Ground-sparrows than *** work is necessary to understand how common this observation is for tropical species that defend small territories year-round.

关键词： Dear enemy Duets Neighbor-stranger discrimination Territory defense White-eared ground-sparrows

NeCAB family of neuronal calcium-binding proteins in health and disease

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Neural Regeneration Research 2025年第5期20卷 1236-1243页

作者： Diones Bueno Michael K.e.Schafer Sudena Wang Michael J.Schmeisser Axel Methner Institute for Molecular Medicine University Medical Center of the Johannes Gutenberg-UniversityMainzGermany Department of Anesthesiology University Medical Center of the Johannes Gutenberg-UniversityMainzGermany Institute of Anatomy University Medical Center of the Johannes Gutenberg-UniversityMainzGermany

The N-terminal eF-hand calcium-binding proteins 1–3(NeCAB1–3) constitute a family of predominantly neuronal proteins characterized by the presence of at least one eF-hand calcium-binding domain and a functionally less well characterized C-terminal antibiotic biosynthesis monooxygenase domain. All three family members were initially discovered due to their interactions with other proteins. NeCAB1 associates with synaptotagmin-1, a critical neuronal protein involved in membrane trafficking and synaptic vesicle exocytosis. NeCAB2 interacts with predominantly striatal G-protein-coupled receptors, while NeCAB3 partners with amyloid-β A4 precursor protein-binding family A members 2 and 3, key regulators of amyloid-β production. This demonstrates the capacity of the family for interactions with various classes of proteins. NeCAB proteins exhibit distinct subcellular localizations: NeCAB1 is found in the nucleus and cytosol, NeCAB2 resides in endosomes and the plasma membrane, and NeCAB3 is present in the endoplasmic reticulum and Golgi apparatus. The antibiotic biosynthesis monooxygenase domain, an evolutionarily ancient component, is akin to atypical heme oxygenases in prokaryotes but is not wellcharacterized in vertebrates. Prokaryotic antibiotic biosynthesis monooxygenase domains typically form dimers, suggesting that calcium-mediated conformational changes in NeCAB proteins may induce antibiotic biosynthesis monooxygenase domain dimerization, potentially activating some enzymatic properties. However, the substrate for this enzymatic activity remains uncertain. Alternatively, calcium-mediated conformational changes might influence protein interactions or the subcellular localization of NeCAB proteins by controlling the availability of protein–protein interaction domains situated between the eF hands and the antibiotic biosynthesis monooxygenase domain. This review summarizes what is known about genomic organization, tissue expression, intracellular localization, interac

关键词： calcium eF hand mitochondria nervous system signal transduction

A Protocol for Fractal Studies on Porosity of Porous Media: High Quality Soil Porosity Images

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Journal of earth Science 2017年第5期28卷 888-896页

作者： Carlos García-gutiérrez Fernando San José Martínez J.Caniego Dpto.Matemática Aplicada E.T.S.I.Navales Universidad Politécnica de Madrid Dpto.Matemática Aplicada E.T.S.I.Agrónomos Universidad Politécnica de Madrid

A protocol for obtaining digital images from natural porous media with a wide range of pore sizes, intended for fractal studies of the porosity, is proposed. Soil porosity is used as para- digm of complex natural porous media in this study. The use of several imaging devices and fluores- cent compounds to enhance the contrast between the solid and the pore phase is tested. Finally a protocol is reached using a photo camera and a confocal microscope. It is the first time that confocal microscopy is used for this purpose. Artificial porous images are created through random Sierpinski carpet fractals and the statistical information of real soil images. These ground truth images are used in an objective comparison of automatic segmentation algorithms for the obtained images. A statistical classification on the performance of several automatic segmentation algorithms for this tv^e of images is reached.

关键词： porous media micromorphology image segmentation confocal microscope fractal,porosity photography.