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Molecular characterization of basidiomycetes associated with the decayed mangrove tree Xylocarpus granatum in Thailand

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Fungal Diversity 2012年第5期56卷 145-156页

作者： Jariya Sakayaroj Sita Preedanon Satinee Suetrong Anupong Klaysuban e.b.gareth jones Tsutomu Hattori National Center for Genetic engineering and biotechnology(bIOTeC) 113 Thailand Science ParkPhahonyothin RoadKhlong NuengKhlong LuangPathum Thani 12120Thailand Kansai Research Center Forestry and Forest Products Research InstituteNagai-Kyutaro 68MomoyamaFushimi-kuKyoto 612-0855Japan

This study reports the frequency of decay(stem/butt rot)of Xylocarpus granatum trees at Hat Khanom-Mu Ko Thale Tai National Park,Nakhonsithammarat province,and other locations in Thailand,and the identification of purported causal basidiomycetes based on morphological and molecular *** survey plots at Hat KhanomMu Ko Thale Tai National Park were established and the incidence of butt rot *** stem/butt rot incidence of *** trees varied from 40.9 to 94.4%with an average of 85.5%along all four *** in Plot 2 supported the heaviest incidence rate(94.4%),with the lowest rate in Plot 3(40.9%).Ninety-two basidiomes were collected,and 46 fungal strains(50%)isolated into axenic culture,the majority associated with tree roots(68.5%of all collections)with 31.5%from the tree *** results,based on LSU and ITS1,2,5.8 S rDNA analyses,confirmed that all samples belonged to the poroid genus Fulvifomes in the Hymenochaetaceae within the Hymenochaetales,*** 43 specimens sequenced grouped into three clades;one clade comprised specimens isolated from only the trunks and branches(14 strains),while the remainders were from roots(29 strains)and shown to be salt *** stem/butt rot strains formed unique phylotypes which did not group with other known Fulvifomes species.

关键词： butt rot Fulvifomes Mangrove Phellinus Stem rot Xylocarpus

Taxonomy and phylogeny of operculate discomycetes: Pezizomycetes

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Fungal Diversity 2018年第3期90卷 161-243页

作者： Anusha H.ekanayaka Kevin D.Hyde e.b.gareth jones Qi Zhao Key Laboratory for Plant Diversity and biogeography of east Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201YunnanChina Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Department of entomology and Plant Pathology Faculty of AgricultureChiang Mai UniversityChiang Mai 50200Thailand

The class Pezizomycetes is monophyletic within the subdivision Pezizomycotina. The main distinguishing character of thisclass is operculate asci, although in some taxa this character has been lost. The circumscription of the families and genericlevel delimitation in Pezizomycetes is still controversial, although several molecular phylogenetic studies have beenpublished on this group. This paper reviews 21 families of Pezizomycetes including five new families, which are introduced here, viz. Kallistoskyphaceae, Pseudombrophilaceae, Pulvinulaceae, Strobiloscyphaceae and Tarzettaceae. Moreover, this study provides a modified backbone tree based on phylogenetic analysis of five combined loci. Descriptions andillustrations of representative taxa for the families are provided from collections made in China, Thailand and the UK,herbarium material from international herbaria (FH, FLAS, H, HKAS and MA) and the literature. Pezizales separates intosix major clades. Clade 1 of Pezizales includes the families Ascobolaceae and Pezizaceae. Clade 2 is the new familyKallistoskyphaceae. Clade 3 comprises the families Caloscyphaceae, Karstenellaceae and Rhizinaceae. Clade 4 representsthe families Discinaceae, Helvellaceae, Morchellaceae, Tuberaceae and Underwoodia columnaris lineage. Clade 5includes Chorioactidaceae, Sarcoscyphaceae and Sarcosomataceae and Clade 6 comprises Ascodesmidaceae, Glaziellaceae, Otideaceae, Pseudombrophilaceae, Pulvinulaceae, Pyronemataceae, Strobiloscyphaceae and Tarzettaceae. Newsequence data belonging to ITS, LSU, SSU, TeF, RPb2 gene regions from 40 pezizalian species are provided here. Thepaper provides a working document for apothecial Pezizomycetes which can be modified as new data comes to light. It ishoped that by illustrating taxa we provide stimulation and interest in the operculate discomycetes, so that further research iscarried out on this remarkable, but poorly studied group of fungi.

关键词： Apothecial ascomycetes Five new families Multi-gene analysis Systematics Tuberales

Trichomeriaceae, a new sooty mould family of Chaetothyriales

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Fungal Diversity 2012年第5期56卷 63-76页

作者： Putarak Chomnunti D.J.bhat e.b.gareth jones ekachai Chukeatirote Ali H.bahkali Kevin D.Hyde International Fungal Research and Development Centre The Research Institute of Resource InsectsChinese Academy of ForestryBailongsiKunmingYunnanPeople’s Republic of China 650224 Institute of excellence in Fungal Research School of ScienceMae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Institute of Ocean and earth Sciences(IOeS) C308Institute of Postgraduate Studies BuildingUniversity of Malaya50603Kuala LumpurMalaysia College of Science Botany and Microbiology DepartmentKing Saud UniversityRiyadh 1145Saudi Arabia

Trichomerium is a genus of foliar epiphytes with the appearance of sooty moulds,mostly occurring on the surface of living leaves and apparently gaining their nutrients from insect *** have ascostromata with setae and develop on a loosely interwoven mycelial mass of dark brown hyphae,while asci have a bitunicate appearance with hyaline *** this study,we made 16 collections of Trichomerium from *** were isolated,and the LSU and ITS rDNA gene regions *** analysis indicated that the Trichomerium species form a monophyletic clade within Chaetothyriales and warrant the introduction of a new family *** support for the Chaetothyriales is 100%and clearly separates Trichomeriaceae from Capnodiales which are morphologically very similar.A detailed account of Trichomerium is provided and we describe and illustrate three new species based on morphological and molecular *** propose that *** is adopted as the generic type of Trichomerium because it has been impossible to obtain the holotype specimen of *** and also no molecular data exists in worldwide databases for this species or genus.

关键词： Foliar epiphytes Phylogeny Sooty moulds Trichomerium

Classification of marine Ascomycota,basidiomycota,blastocladiomycota and Chytridiomycota

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Fungal Diversity 2015年第4期73卷 1-72页

作者： e.b.gareth jones Satinee Suetrong Jariya Sakayaroj Ali H.bahkali Mohamed A.Abdel-Wahab Teun boekhout Ka-Lai Pang Department of botany and Microbiology College of ScienceKing Saud UniversityP.O.Box:2455Riyadh 1145Saudi Arabia Fungal biodiversity Laboratory BIOTECNational Science and Technology Development Agency(NSTDA)113 Thailand Science ParkThanon PhahonyothinTombon Khlong NuengAmphoe Khlong LuangPathum Thani 12120Thailand Department of botany Faculty of ScienceSohag UniversitySohagEgypt CbS Fungal biodiversity Centre(KNAW) Uppsalalaan 83584CT UtrechtThe Netherlands Institute of Marine biology and Center of excellence for the Oceans Taiwan Ocean University2 Pei-Ning RoadKeelung 20224TaiwanRepublic of China

This paper lists the accepted names and classification of marine fungi,updating the scheme presented in *** classification includes 1,112 species(in 472 genera):Ascomycota 805(in 352 genera),basidiomycota 21 species(in 17 genera),Chytridiomycota and related phyla 26 species(in 13 genera),Zygomycota three(in two genera),blastocladiomycota one species(one genus),asexual morphs of filamentous fungi 43(in 26 genera);and marine yeasts:Ascomycota 138 species(in 35 genera),basidiomycota 75 species(in 26 genera).These fungi belong to 129 families and 65 *** Halosphaeriaceae remains the largest family of marine fungi with 141 species in 59 genera,while the most specious genera are Aspergillus(47 species),Penicillium(39 species)and the yeast genus Candida(64 species).The review includes details of recent higher order nomenclature changes,and accounts of new families,genera and species described over the past 5 years.

关键词： Fungal classification Marine fungi Molecular phylogeny New taxa Praelongicaulis gen nov Tirisporellales Torpedosporales ordo nov

Special issue:a tribute to Kevin *** on his 65th birthday

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Fungal Diversity 2021年第1期106卷 1-6页

作者： Jian-Kui Liu Sajeewa S.N.Maharachchikumbura eric H.C.McKenzie Lei Cai Jayarama D.bhat e.b.gareth jones Marc Stadler School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101China Department of botany Goa UniversityGoaIndia Department of botany and Microbiology King Saudi UniversityRiyadhSaudi Arabia Department Microbial Drugs Helmholtz Centre for Infection Research(HZI)and German Centre for Infection Research(DZIF)Partner Site Hannover-BraunschweigInhoffenstrasse 738124 BraunschweigGermany Curca Goa Velha 403108India

This special issue is dedicated to emeritus *** *** in recognition of his contributions to mycology on the occasion of his 65th *** was born on 3rd May *** a young man,his curiosity about animals and plants around his locality and gathering and identifying mushrooms shaped his later career as a great mycologist in the present *** an early desire to pursue biology,he obtained *** Zoology in 1979 from University of Wales,Cardiff,UK,his *** project being on duck *** became interested in the degradation of materials by microorganisms,and enrolled on a taught *** the biodeterioration of Materials at University of Portsmouth,UK,in *** part of the course,he undertook a dissertation in *** Portsmouth,Kevin first met Professor gareth jones,who shaped much of his career *** his passion for teaching and sharing knowledge with others,Kevin took a postgradu-ate certificate in education(PGCe)at bristol University。

关键词： gathering Wales shaped

Taxonomy,phylogeny,molecular dating and ancestral state reconstruction of Xylariomycetidae(Sordariomycetes)

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Fungal Diversity 2022年第1期112卷 1-88页

作者： Milan C.Samarakoon Kevin D.Hyde Sajeewa S.N.Maharachchikumbura Marc Stadler e.b.gareth jones Itthayakorn Promputtha Nakarin Suwannarach erio Camporesi Timur S.bulgakov Jian-Kui Liu School of Life Science and Technology Center for Informational BiologyUniversity of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Research Center in bioresources for Agriculture Industry and MedicineChiang Mai UniversityChiang Mai 50200Thailand Department of biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand Institute of Microbiology Technische Universität BraunschweigSpielmannstraße 738106 BrunswickGermany Department of botany and Microbiology College of ScienceKing Saud UniversityP.O Box 2455Riyadh 11451Kingdom of Saudi Arabia Research Center of Microbial Diversity and Sustainable Utilization Chiang Mai UniversityChiang Mai 50200Thailand A.M.b.Gruppo Micologico Forlivese"Antonio Cicognani"Via Roma 18ForliItaly Department of Plant Protection Federal Research Centre the Subtropical Scientific Centre of the Russian Academy of SciencesYana Fabritsiusa Street 2/28SochiKrasnodar RegionRussia 354002

Xylariomycetidae(Ascomycota)is a highly diversified group with variable stromatic *** research focused on inconspicuous stromatic xylarialean taxa from China,Italy,Russia,Thailand and the United *** morpho-logical descriptions,illustrations and combined ITS-LSU-rpb2-tub2-tef1 phylogenies revealed 39 taxa from our collections belonging to Amphisphaeriales and Xylariales.A new family(Appendicosporaceae),five new genera(Magnostiolata,Mela-nostictus,Neoamphisphaeria,Nigropunctata and Paravamsapriya),27 new species(Acrocordiella photiniicola,Allocryp-tovalsa sichuanensis,Amphisphaeria parvispora,Anthostomella lamiacearum,Apiospora guiyangensis,***,biscogniauxia magna,eutypa camelliae,Helicogermslita clypeata,Hypocopra zeae,Magnostiolata mucida,Melanostictus longiostiolatus,***,Nemania longipedicellata,***,***,***,Neoamphispha-eria hyalinospora,Neoanthostomella bambusicola,Nigropunctata bambusicola,***,***,Occul-titheca rosae,Paravamsapriya ostiolata,Peroneutypa leucaenae,Seiridium italicum and Vamsapriya mucosa)and seven new host/geographical records are introduced and *** time estimates indicate that Delonicicolales diverged from Amphisphaeriales+Xylariales at 161(123-197)*** and Xylariales diverged 154(117-190)MYA with a crown age of 127(92-165)MYA and 147(111-184)MYA,***(Amphisphaeriales)has a stem age of 89(65-117)*** character state reconstruction indicates that astromatic,clypeate ascomata with aseptate,hyaline ascospores that lack germ slits may probably be ancestral Xylariomycetidae having plant-fungal endo-phytic *** Amphisphaeriales remained mostly astromatic with common septate,hyaline *** variations may have developed mostly during the Cretaceous *** ascospores are common in Xylariales,but they first appeared in Amphisphaeriaceae,Melogrammataceae and Sp

关键词： 33 new taxa Amphisphaeriales Appendicosporaceae evolution Stromata Xylariales

Tubeufiales,***.,integrating sexual and asexual generic names

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Fungal Diversity 2014年第5期68卷 239-298页

作者： Saranyaphat boonmee Amy Y.Rossman Jian-Kui Liu Wen-Jing Li Don-Qing Dai Jayarama D.bhat e.b.gareth jones eric H.C.McKenzie Jian-Chu Xu Kevin D.Hyde Key Laboratory for Plant Diversity and biogeography of east Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanChina World Agro forestry Centre east and Central Asia Office 132 Lanhei RoadKunming 650201China Institute of excellence in Fungal Research Mae Fah Luang UniversityMuangChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityMuangChiang Rai 57100Thailand Systematic Mycology and Microbiology Laboratory USDA-ARSBeltsvilleMD 20705USA Formerly at Department of botany Goa UniversityGoa 403206India Department of botany and Microbiology King Saudi UniversityRiyadhSaudi Arabia Landcare Research AucklandNew Zealand

Tubeufiaceae is based on the generic type Tubeufia,which is characterized by superficial,oval and bright ascomata,bitunicate asci,mostly long fusiform to filiform,transeptate ascospores and hyphomycetous asexual states with helicosporous *** species in this family are saprobic on terrestrial woody substrates and some are *** distinct morphology as well as combined LSU,SSU and TeF1 sequence analysis show that Tubeufiaceae should be accommodated in a new order Tubeufiales,which is introduced in this *** analyses of combined LSU and ITS sequences were used to resolve genera and species within the family *** this study,we examine and incorporate sexual and asexual states of genera in Tubeufiales to provide a modern treatment,based on single *** epitype for Tubeufia javanica,the type species of Tubeufia,is designated and represents Tubeufia sensu *** genera Acanthophiobolus,Acanthostigma,boerlagiomyces,Chlamydotubeufia,Kamalomyces,Podonectria,Thaxteriella and Thaxteriellopsis are accepted,Acanthostigmina is reinstated,and the asexual genera Aquaphila,Helicoma,Helicomyces,Helicosporium and Tamhinispora are accepted in *** new genera Acanthohelicospora,Helicangiospora and Neoacanthostigma are *** genus bifrontia is added to the family based on morphological *** incongruous morphological genera Acanthostigmella,Amphinectria,Chaetocrea,Chaetosphaerulina,Glaxoa,Malacaria,Melioliphila,Paranectriella,Puttemansia,Rebentischia and Uredinophila are excluded from Tubeufiaceae despite having characteristic ascomata with setae and multiseptate long spores.A key to genera accepted in Tubeufiaceae is provided.

关键词： Dothideomycetes Helicospores New genus Phylogeny Taxonomy Tubeufiaceae

Taxonomic and phylogenetic contributions to fungi associated with the invasive weed Chromolaena odorata (Siam weed)

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Fungal Diversity 2020年第2期101卷 1-175页

作者： Ausana Mapook Kevin D.Hyde eric H.C.McKenzie e.b.gareth jones D.Jayarama bhat Rajesh Jeewon Marc Stadler Milan C.Samarakoon Maitree Malaithong benjawan Tanunchai François buscot Tesfaye Wubet Witoon Purahong Key Laboratory for Plant biodiversity and biogeography of east Asia(KLPb) Kunming Institute of BotanyChinese Academy of Science KunmingKunming 650201YunnanPeople’s Republic of China Department of Soil ecology UFZ-Helmholtz Centre for Environmental ResearchTheodor‑Lieser‑Str.406120 Halle(Saale)Germany Center of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Department Microbial Drugs Helmholtz Centre for Infection Researchand German Centre for Infection Research(DZIF)Partner Site Hannover-BraunschweigInhoffenstrasse 738124 BrunswickGermany Institute of Plant Health Zhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225People’s Republic of China Manaaki Whenua-Landcare Research Private Bag 92170AucklandNew Zealand Department of botany and Microbiology College of ScienceKing Saud UniversityP.O Box 2455Riyadh 11451Kingdom of Saudi Arabia No.128/1‑J Azad Co‑Op Housing SocietyCurcaGoa Velha 403108India Department of Health Sciences Faculty of ScienceUniversity of MauritiusReduit 80837Mauritius Present Address:Department of Community ecology UFZ-Helmholtz Centre for Environmental ResearchTheodor‑Lieser‑Str.406120 Halle(Saale)Germany German Centre for Integrative biodiversity Research(iDiv) Halle-Jena-LeipzigDeutscher Platz 5e04103 LeipzigGermany

This article provides morphological descriptions and illustrations of microfungi associated with the invasive weed,Chro-molaena odorata,which were mainly collected in northern ***-seven taxa distributed in ten orders,23 families(of which Neomassarinaceae is new),12 new genera(Chromolaenicola,Chromolaenomyces,Longiappendispora,Pseudocapulatispora,Murichromolaenicola,Neoophiobolus,Paraleptospora,Pseudoroussoella,Pseudostaurosphaeria,Pseudothyridariella,Setoarthopyrenia,Xenoroussoella),47 new species(Aplosporella chromolaenae,Arthrinium chromolae-nae,Chromolaenicola chiangraiensis,***,***,***,Chromolaenomyces appendiculatus,Diaporthe chromolaenae,Didymella chromolaenae,Dyfrolomyces chromolaenae,Leptospora chromolaenae,***,Longiappendispora chromolaenae,Memnoniella chromolaenae,Montagnula chiangraiensis,***,***-laenicola,***,Murichromolaenicola chiangraiensis,***,Muyocopron chromolaenae,***-laenicola,Neomassarina chromolaenae,Neoophiobolus chromolaenae,Neopyrenochaeta chiangraiensis,***,***,***,Nigrograna chromolaenae,Nothophoma chromolaenae,Paraleptospora chromolaenae,***,Patellaria chromolaenae,Pseudocapulatispora longiappendiculata,Pseudoroussoella chromolaenae,Pseudostaurosphaeria chromolaenae,***,Pseudothyridariella chromolaenae,Pyrenochaetopsis chromolae-nae,Rhytidhysteron chromolaenae,Setoarthopyrenia chromolaenae,Sphaeropsis chromolaenicola,Tremateia chiangraiensis,***,***,Xenoroussoella triseptata,Yunnanensis chromolaenae),12 new host records,three new taxonomic combinations(Chromolaenicola siamensis,Pseudoroussoella elaeicola,Pseudothyridariella mahakashae),and two reference specimens(Torula chromolaenae,***)are described and *** some other hosts,***(Poaceae)and Pandanaceae,the dominant group of fungi on Siam weed were *** 15 species previously

关键词： 60 new taxa Antimicrobial activity Ascomycota Checklist Dothideomycetes evolutionary divergence times Multi-gene phylogenetics Sordariomycetes

Towards a natural classification and backbone tree for Pleosporaceae

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Fungal Diversity 2015年第2期71卷 85-139页

作者： Hiran A.Ariyawansa Kasun M.Thambugala Dimuthu S.Manamgoda Ruvishika Jayawardena erio Camporesi Saranyaphat boonmee Dhanushka N.Wanasinghe R.Phookamsak Singang Hongsanan Chonticha Singtripop ekachai Chukeatirote Ji-Chuan Kang e.b.gareth jones Kevin D.Hyde Key Laboratory for Plant Diversity and biogeography of east Asia Kunming Institute of BotanyChinese Academy of SciencesKunming 650201People’s Republic of China World Agroforestry Centre East Asia and CentralHeilongtanKunming 650201People’s Republic of China The engineering and Research Center for Southwest bio-Pharmaceutical Resources of National education Ministry of China Guizhou UniversityGuiyang 550025Guizhou ProvinceChina School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Institute of excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand A.M.b.Gruppo Micologico Forlivese"Antonio Cicognani" Via Roma 18ForlìItaly Department of botany and Microbiology King Saudi UniversityRiyadhSaudi Arabia

The family Pleosporaceae includes numerous saprobic,opportunistic human,and plant pathogenic *** classification of genera and species Pleosporaceae has been a major challenge due to the lack of a clear understanding of the importance of the morphological characters used to distinguish taxa as well as the lack of reference *** treatments concluded that Pleospora and some other genera in Pleosporaceae are likely *** order to establish the evolutionary relationships and to resolve the polyphyletic nature of Pleospora and allied genera,we sequenced the 18S nrDNA,28S nrDNA,ITS,GAPDH,RPb2 and TeF1-alpha gene regions of Pleosporaceae species and phylogenetically analysed this *** phylogenies strongly support the monophyletic nature of Pleosporaceae among the other families in Pleosporales,and the acceptance of the genera Alternaria,bipolaris,Clathrospora,Comoclathris,Curvularia,Dactuliophora,Decorospora,Diademosa,exserohilum,extrawettsteinina,Gibbago,Neocamarosporium,Paradendryphiella,Platysporoides,Pleospora,Porocercospora,Pseudoyuconia and ***,Dendryphion,edenia and Macrospora are excluded from the family based on morphology coupled with molecular *** novel species,Alternaria murispora in this paper and Comoclathris sedi are *** sexual morph of Alternaria alternata is re-described and illustrated using modern concepts from fresh *** paraphyletic nature of Pleospora is resolved based on the available morpho-molecular data,but further sampling with fresh collections,reference or ex-type strains and molecular data are needed to obtain a natural classification of genera and the family.

关键词： backbone tree Dothideomycetes Pleosporales Plant pathogens Saprobes