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Observation of a single protein by ultrafast X-ray diffraction

Light(Science & Applications) 2024年第1期13卷 80-90页

作者： Tomas ekeberg Dameli Assalauova Johan Bielecki Rebecca Boll Benedikt J.Daurer Lutz A.eichacker Linda e.Franken Davide e.Galli Luca Gelisio Lars Gumprecht Laura H.Gunn Janos Hajdu Robert Hartmann Dirk Hasse Alexandr Ignatenko Jayanath Koliyadu Olena Kulyk Ruslan Kurta Markus Kuster Wolfgang Lugmayr Jannik Lübke Adrian P.Mancuso Tommaso Mazza Carl Nettelblad Yevheniy Ovcharenko daniel e.rivas Max Rose Amit K.Samanta Philipp Schmidt egor Sobolev Nicusor Timneanu Sergey Usenko daniel Westphal Tamme Wollweber Lena Worbs Paul Lourdu Xavier Hazem Yousef Kartik Ayyer Henry N.Chapman Jonas A.Sellberg Carolin Seuring Ivan A.Vartanyants Jochen Küpper Michael Meyer Filipe R.N.C.Maia Laboratory of Molecular Biophysics Department of Cell and Molecular BiologyUppsala UniversityHusargatan 3(Box 596)SE-75124 UppsalaSweden Deutsches electronen-Synchrotron DeSY Notkestrasse 8522607 HamburgGermany european XFeL Holzkoppel 422869 SchenefeldGermany Diamond Light Source Harwell Science&Innovation CampusDidcot OX110DEUK University of Stavanger Centre Organelle ResearchRichard-Johnsensgate 44021 StavangerNorway Leibniz Institute for experimental Virology(HPI) Centre for Structural Systems BiologyNotkestraße 8522607 HamburgGermany Dipartimento di Fisica“Aldo Pontremoli” Universitàdegli Studi di Milanovia Celoria 1620133 MilanoItaly Center for Free-electron Laser Science DESY22607 HamburgGermany Plant Biology Section School of Integrative Plant ScienceCornell UniversityIthacaNY 14853USA PNSensor GmbH Otto-Hahn-Ring 6D-81739 MünchenGermany Biomedical and X-Ray Physics Department of Applied PhysicsAlbaNova University CenterKTH Royal Institute of TechnologySE-10691 StockholmSweden eLI Beamlines/IoP Institute of Physics AS CR v.v.i.Na Slovance 218221 Prague 8Czech Republic Multi-User CryoeM Facility Centre for Structural Systems BiologyNotkestr.8522607 HamburgGermany University Medical Center Hamburg-eppendorf(UKe) Martinistrasse 5220246 HamburgGermany The Hamburg Center for Ultrafast Imaging Universität HamburgLuruper Chaussee 14922761 HamburgGermany Department of Physics Universität HamburgLuruper Chaussee 14922761 HamburgGermany Department of Chemistry and Physics La Trobe Institute for Molecular ScienceLa Trobe UniversityMelbourneVIC 3086Australia Division of Scientific Computing Science for Life LaboratoryDepartment of Information TechnologyUppsala UniversityBox 337SE-75105 UppsalaSweden european Molecular Biology Laboratory c/o DESYNotkestrasse 8522607 HamburgGermany Department of Physics and Astronomy Uppsala UniversityBox 516SE-75120 UppsalaSweden Max Planck Institute for the Structure and Dynamics of Matter Luruper Chaussee 14922761 HamburgGe

The idea of using ultrashort X-ray pulses to obtain images of single proteins frozen in time has fascinated and inspired *** was one of the arguments for building X-ray free-electron *** to theory,the extremely intense pulses provide sufficient signal to dispense with using crystals as an amplifier,and the ultrashort pulse duration permits capturing the diffraction data before the sample inevitably *** was first demonstrated on biological samples a decade ago on the giant *** then,a large collaboration has been pushing the limit of the smallest sample that can be *** ability to capture snapshots on the timescale of atomic vibrations,while keeping the sample at room temperature,may allow probing the entire conformational phase space of *** we show the first observation of an X-ray diffraction pattern from a single protein,that of escherichia coli GroeL which at 14 nm in diameter is the smallest biological sample ever imaged by X-rays,and demonstrate that the concept of diffraction before destruction extends to single *** the pattern,it is possible to determine the approximate orientation of the *** experiment demonstrates the feasibility of ultrafast imaging of single proteins,opening the way to single-molecule time-resolved studies on the femtosecond timescale.

关键词： smallest intense ultrafast

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Realizing Attosecond Core-Level X-ray Spectroscopy for the Investigation of Condensed Matter Systems

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Ultrafast Science 2023年第4期3卷 1-13页

作者： Adam M.Summers Stefano Severino Maurizio Reduzzi Themistoklis P.H.Sidiropoulos daniel e.rivas Nicola Di Palo Hung-Wei Sun Ying-Hao Chien Iker Leon Barbara Buades Seth L.Cousin Stephan M.Teichmann Tobias Mey Klaus Mann Barbara Keitel elke Plonjes Dmitri K.efetov Heinrich Schwoerere Jens Biegert ICFO-Institut de Ciencies Fotoniques The Barcelona Institute of Science and Technology08860 CastelldefelsBarcelonaSpain Linac Coherent Light Source SLAC National Accelerator LaboratoryMenlo ParkCA 94025USA european XFeL Holzkoppel 422869 SchenefeldGermany Institut für Nanophotonik Göttingen e.V. Hans-Adolf-Krebs-Weg 137077 GöttingenGermany Deutsches elektronen-Synchrotron Notkestraße 8522607 HamburgGermany Max-Planck-Institut für Struktur und Dynamik der Materie 22761 HamburgGermany ICReA Pg.Lluís Companys 2308010 BarcelonaSpain

Unraveling the exact nature of nonequilibrium and correlated interactions is paramount for continued progress in many areas of condensed matter science. Such insight is a prerequisite to develop an engineered approach for smart materials with targeted properties designed to address standing needs such as efficient light harvesting, energy storage, or information processing. For this goal, it is critical to unravel the dynamics of the energy conversion processes between carriers in the earliest time scales of the excitation dynamics. We discuss the implementation and benefits of attosecond soft x-ray core-level spectroscopy up to photon energies of 600 eV for measurements in solid-state systems. In particular, we examine how the pairing between coherent spectral coverage and temporal resolution provides a powerful new insight into the quantum dynamic interactions that determine the macroscopic electronic and optical response. We highlight the different building blocks of the methodology and point out the important aspects for its application from condensed matter studies to materials as thin as 25 nm. Furthermore, we discuss the technological developments in the field of tabletop attosecond soft x-ray sources with time-resolved measurements at the near and extended edge simultaneously and investigate the exciting prospective of extending such technique to the study of 2-dimensional materials.

关键词： Attosecond Science Core-level x-ray Spectroscopy High Harmonic Generation X-ray Absorption Ultrafast solid-state dynamics

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A systematic review of real-time detection and classification of power quality disturbances

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Protection and Control of Modern Power Systems 2023年第1期8卷 30-66页

作者： Joaquín e.Caicedo daniel Agudelo-Martínez edwin rivas-Trujillo Jan Meyer Faculty of engineering Universidad Distrital Francisco Joséde CaldasBogotáColombia Institute of electrical Power Systems and High Voltage engineering Technische Universität DresdenDresdenGermany Bogotá Colombia

This paper offers a systematic literature review of real-time detection and classification of Power Quality Disturbances(PQDs).A particular focus is given to voltage sags and notches,as voltage sags cause huge economic losses while research on voltage notches is still very incipient.A systematic method based on scientometrics,text similarity and the analytic hierarchy process is proposed to structure the review and select the most relevant literature.A biblio-metric analysis is then performed on the bibliographic data of the literature to identify relevant statistics such as the evolution of publications over time,top publishing countries,and the distribution by relevant topics.A set of articles is subsequently selected to be critically *** critical review is structured in steps for real-time detection and classification of PQDs,namely,input data preparation,preprocessing,transformation,feature extraction,feature selec-tion,detection,classification,and *** associated with the type of disturbance(s)addressed in the literature are also explored throughout the review,including the perspectives of those studies aimed at multiple PQDs,or specifically focused on voltage sags or voltage *** real-time performance of the reviewed tools is also ***,unsolved issues are discussed,and prospects are highlighted.

关键词： Bibliometric analysis Classification Detection Power quality(PQ) Real-time Systematic review Voltage sag Voltage notch

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early‑life milk replacer feeding mediates lipid metabolism disorders induced by colonic microbiota and bile acid profiles to reduce body weight in goat model

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Journal of Animal Science and Biotechnology 2025年第1期16卷 300-315页

作者： Ke Zhang Ting Zhang Mengmeng Guo Awang Cuoji Yangbin Xu Yitong Zhao Yuxin Yang daniel Brugger Xiaolong Wang Langda Suo Yujiang Wu Yulin Chen Key Laboratory of Animal Genetics Breeding and Reproduction of Shaanxi ProvinceCollege of Animal Science and TechnologyNorthwest A&F UniversityYangling 712100China College of Animal engineering Yangling Vocational and Technical CollegeYanglingShaanxi 712100China Institute of Animal Sciences Tibet Academy of Agricultural and Animal Husbandry SciencesLhasa 850009China Institute of Animal Nutrition and Dietetics Vetsuisse‑FacultyUniversity of ZurichZurich 8057Switzerland Key Laboratory of Animal Genetics and Breeding On Tibetan Plateau Ministry of Agriculture and Rural AffairsLhasa 850009China.

Background Dysregulation of lipid metabolism and its consequences on growth performance in young ruminants have attracted attention,especially in the context of alternative feeding *** study aims to elucidate the effects of milk replacer(MR)feeding on growth,lipid metabolism,colonic epithelial gene expression,colonic microbiota composition and systemic metabolism in goat kids compared to breast milk(BM)feeding,addressing a critical knowledge gap in early life *** Ten female goat kids were divided into 2 groups:those fed breast milk(BM group)and those fed a milk replacer(MR group).Over a period of 28 d,body weight was monitored and blood and tissue samples were collected for biochemical,transcriptomic and metabolomic *** of the colonial microbiota was performed using 16S rRNA gene *** microbiota transplantation(IMT)experiments in gnotobiotic mice were per-formed to validate *** MR-fed pups exhibited reduced daily body-weight gain due to impaired lipid metabolism as evidenced by lower serum and liver total cholesterol(TC)and non-esterified fatty acid(NeFA)*** analysis of the colonic epithelium revealed upregulated genes involved in negative regulation of lipid metabolism,concomitant with microbiota shifts characterized by a decrease in Firmicutes and an increase in ***,genera such as Bifidobacterium and Prevotella were enriched in the MR group,while Clostridium and Fae-calibacterium were *** analyses confirmed alterations in bile acid and fatty acid metabolic *** experiments in mice recapitulated the metabolic phenotype observed in MR-fed goats,confirming the role of the microbiota in modulating host lipid *** Milk replacer feeding in goat kids disrupts lipid metabolism and gut microbiota dynamics,result-ing in reduced growth rates and metabolic *** findings highlight the importance of e

关键词： Bile acid Colon microbiota Goat model Lipid metabolism Milk replacer

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Can sexual selection and disassortative mating contribute to the maintenance of a shell color polymorphism in an inter- tidal marine snail？

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Current Zoology 2012年第3期58卷 463-474页

作者： emilio ROLALVAReZ Maria SAURA Angel e DIZ Marfa JOSe.rivas MargaALVAReZ Beatriz CORTeS Alicia de COO daniel eSTeVeZ Laura IGLeSIAS Departamento de Bioqufmica Genetica e Inmunologfa Facultad de Biologfa Universidad de Vigo Campus de Vigo 36310 VigoSpain

Littorina fabalis is an intertidal snail commonly living on the brown algae Fucus vesiculosus and showing frequent shell-color polymorphisms in the wild. The evolutionary mechanism underlying this polymorphism is currently unknown. Shell color variation was studied in mated and non-mated specimens of this species from different microareas in one locality from NW Spain, in order to estimate sexual selection and assortative mating that may （still） be operating in this population. The analyses across microareas allowed us to investigate frequency-dependent selection and assortative mating components, mechanisms that could maintain the polymorphism. The presence of shell scars caused by crab attacks, an environmental variable not related with sexual selection or assortative mating, was used as experimental control. This study provides new evidence of significant disas- sortative mating and some degree of sexual selection against some shell colors, supporting the results found 21 years ago in a similar study, i.e. in the same species and locality. The similarity of these estimates during the studied period suggests that this experimental approach is consistent and valid to be extended to other populations and organisms. In addition, sexual selection and assortative mating estimates did not change across microareas differing in shell color frequencies, suggesting than the polymor- phism can not be maintained by a frequency-dependent （sexual selection-based） mechanism. Our main hypothesis is that negative assortative mating could contribute to the maintenance of the polymorphism, perhaps by males showing distinct female color preferences when searching for mates [Current Zoology 58 （3）： 463-474, 2012].

关键词： Fitness estimate Mate choice Mate propensity Negative assortative mating Sexual selection Frequency-dependentselection

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A pharmacologist's journey in medical education:a personal history

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Acta Pharmacologica Sinica 2004年第9期25卷 102-106页

作者： e e daniel AB T6G 2H7 Canada Department of Pharmacology Room 9-10 edmonton MSB University of Alberta

My journey as an educator in Pharmacology began in 1949, when, after finishing my MA in Biology at Johns Hopkins, Ⅰ decided that Ⅰ wanted to be involved in science with more relevance to humans. Ⅰhad been chasing f... 详细信息

关键词： ACe A pharmacologist’s journey in medical education

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Alcohol use disorder and its impact on chronic hepatitis C virus and human immunodeficiency virus infections

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World Journal of Hepatology 2016年第31期8卷 1295-1308页

作者： daniel Fuster Arantza Sanvisens Ferran Bolao Inmaculada rivas Jordi Tor Robert Muga Department of Internal Medicine Addiction Unit Hospital Univer-sitari Germans Trias i Pujol Department of Internal Medicine Hospital Univer-sitari de Bellvitge IDIBELL Municipal Center for Substance Abuse Treatment (Centro Delta) IMSP

Alcohol use disorder(AUD) and hepatitis C virus(HCV) infection frequently co-occur. AUD is associated with greater exposure to HCV infection, increased HCV infection persistence, and more extensive liver damage due to interactions between AUD and HCV on immune responses, cytotoxicity, and oxidative stress. Although AUD and HCV infection are associated with increased morbidity and mortality, HCV antiviral therapy is less commonly prescribed in individuals with both conditions. AUD is also common in human immunodeficiency virus(HIV) infection, which negatively impacts proper HIV care and adherence to antiretroviral therapy, and liver disease. In addition, AUD and HCV infection are also frequent within a proportion of patients with HIV infection, which negatively impacts liver disease. This review summarizes the current knowledge regarding pathological interactions of AUD with hepatitis C infection, HIV infection, and HCV/HIV co-infection, as well as relating to AUD treatment interventions in these individuals.

关键词： Hepatitis C virus Human immunodeficiency virus Hepatitis C virus/human immunodeficiency virus co-infection Liver Alcohol

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Diversity, endemism and Conservation of Ferns(Polypodiales) in the Mexican Mountain Component

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Journal of Mountain Science 2015年第4期12卷 891-904页

作者： SANGINéS-FRANCO Celia LUNA-VeGA Isolda CONTReRAS-MeDINA Raúl eSPINOSA David TeJeRO-DíeZ José daniel rivas Gerardo Laboratorio de Biogeografía y Sistemática Departamento de Biología Evolutiva Facultad de Ciencias Universidad Nacional Autónoma de México (UNAM) escuela de Ciencias Universidad Autónoma "Benito Juárez" de Oaxaca (UABJO) Av.Universidad s/n Ex Hacienda de Cinco Se?ores Oaxaca de Juárez CP 68120 Oaxaca México Facultad de estudios Superiores Zaragoza Unidad Multidisciplinaria de Investigación Experimental ZaragozaUniversidad Nacional Autónoma de México (UNAM) Carrera de Biología Facultad de Estudios Superiores Iztacala Universidad Nacional Autónoma de México MéxicoAvenida de los Barrios Número 1 Colonia Los Reyes Iztacala Tlalnepantla CP 54090 Estado de México México Laboratorio de Biogeografía Acuática Departamento de Biología Comparada Facultad de Ciencias Universidad Nacional Autónoma de México (UNAM)

We analyzed the distributional patterns of95 selected species of leptosporangiate ferns inhabiting the Mexican Mountain Component, using grid-cells of one geographical degree as unit areas,applying endemism indices and richness and beta diversity *** data were obtained from several herbaria and specialized *** grid-cells appear to be important for fern species richness, as they contain 35 to 49 *** gridcells are located in the Sierra Madre Oriental(SMO),Trans-Mexican Volcanic Belt(TMVB) and the Sierra Madre del Sur(SMS).Mean richness by latitudinal belts of one degree showed that the belts with highest values are related to the TMVB and SMS.A total of 13grid-cells were recognized as important from theperspective of endemism; most of them are located also in the SMO, TMVB and *** richest gridcells coincided with one of the main centres of endemism for ferns obtained in this study, located in the convergence of the southern part of the SMO, the eastern portion of the TMVB and the northern part of the SMS, reflecting the high humidity existing on the mountain slopes facing the Gulf of *** important grid-cells recognized from richness and endemism analyses coincide with Mexican Natural Protected *** beta diversity analysis showed a low degree of similarity among grid-cells, implying a high species replacement, as the result of environmental heterogeneity occurring in the Mexican mountain *** the other hand, the spatial analysis suggested a pattern of phytogeographical regionalization comprising twomain areas: the Mexican Transition Zone and the Mexican Central *** play an important role in the Mexican biodiversity and contributing to the beta diversity of Mexico.

关键词： Biogeography Distributional patterns Leptosporangiate ferns Mexico

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Interpenetrating polymers supported on microporous polypropylene membranes for the transport of chromium ions

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Chinese Journal of Chemical engineering 2017年第7期25卷 938-946页

作者： Yesid Tapiero Julio Sánchez BernabéL.rivas Polymer Department Faculty of ChemistryUniversity of ConcepdonCasilla 160-C ConcepcionChile

Modifying polypropylene membranes with interpenetrating polymer networks(IPNs) through the incorporation of poly(glycidyl methacrylate-N-methyl-D-glucamine)(P(GMA-NMG)) was performed by in situ synthesis via radical polymerization. The surface of the polypropylene membrane was activated by hydrophilic grafted polyelectrolyte, and then, pressure injection was used for the impregnation of the reactive solution in the *** types of pore-filled membranes were synthesized, chelating interpenetrating homopolymer networks of P(GMA-NMG), and chelating-ion exchange interpenetrating polymer networks(e.g., P(GMA-NMG)/P(AA),P(GMA-NMG)/P(AMPSA), and P(GMA-NMG)/P(Cl VBTA)). After their synthesis, the modified polypropylene membranes were characterized using techniques such as the electrokinetic potential, SeM, FT-IR, and Donnan dialysis to corroborate the chromium ion transport. The P(GMA-NMG) and complex network membranes exhibited a hydrophilic character with a water-uptake capacity between 20% and 35% and a percentage of modification between 4.0% and 7.0% in comparison with the behavior of the unmodified polypropylene *** chromium ions were efficiently transported from the food chamber at p H 9.0 when the 65.2%MTA1 P(Cl VBTA) homopolymer IPN membrane and 48.5% MTAG P(GMA-NMG)/P(Cl VBTA) IPN membrane were used. Similarly, hexavalent chromium ions were removed from the food chamber at pH 3.0 when MTAG(63.30%) and MTA1(35.68%) were used in 1 mol·L^(-1)Na Cl solution as the extraction reagent.

关键词： Polypropylene N-methyI-D-glucamine Ion exchange Donnan dialysis Interpenetrating polymer networks Chromium

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Utilizing zebrafish and okadaic acid to study Alzheimer's disease

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Neural Regeneration Research 2018年第9期13卷 1538-1541页

作者： daniel Koehler Frederick e.Williams Department of Pharmacology and experimental Therapeutics University of Toledo

Despite the many years of extensive research using rodent models to study Alzheimer＇s disease （AD）, no cure or disease halting drug exists. An increasing number of people are suffering from the disease and a therapeutic intervention is needed. Therefore, it is necessary to have complementary models to aid in the drug discovery. The zebrafish animal model is emerging as a valuable model for the investigation of AD and neurodegenerative drug discovery. The main genes involved in human AD have homologous counter- parts in zebrafish and have conserved function. The basic brain structure of the zebrafish is also conserved when compared to the mammalian brain. Recently an AD model was established by administering okadaic acid to zebrafish. It was used to test the efficacy of a novel drug, lanthionine ketimine-5-ethyl ester, and to elucidate its mechanism of action. This demonstrated the ability of the okadaic acid-induced AD zebrafish model to be implemented in the drug discovery process for therapeutics against AD.

关键词： Alzheimer's disease Zebrafish okadaic acid protein phosphatase 2A learning and memory lanthionine ketimine-5-ethyl ester

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