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design of antiviral AGO2-dependent short hairpin RNAs

Virologica Sinica 2024年第4期39卷 645-654页

作者： Yuanyuan Bie Jieling zhang Jiyao Chen Yumin zhang Muhan Huang Leike zhang Xi zhou yang Qiu Key Laboratory of Virology and Biosafety Wuhan Institute of VirologyChinese Academy of SciencesWuhan 430071China State Key Laboratory of Virology Wuhan Institute of VirologyChinese Academy of SciencesWuhan 430071China University of Chinese Academy of Sciences Beijing 100049China School of Life Sciences Division of Life Sciences and MedicineUniversity of Science and Technology of ChinaHefei 230027China

The increasing emergence and re-emergence of RNA virus outbreaks underlines the urgent need to develop effective *** interference(RNAi)is a sequence-specific gene silencing mechanism that is triggered by small interfering RNAs(siRNAs)or short hairpin RNAs(shRNAs),which exhibits significant promise for antiviral ***2-dependent shRNA(agshRNA)generates a single-stranded guide RNA and presents significant advantages over traditional siRNA and *** this study,we applied a logistic regression algorithm to a previously published chemically siRNA efficacy dataset and built a machine learning-based model with high predictive *** this model,we designed siRNA sequences targeting diverse RNA viruses,including human enterovirus A71(EV71),zika virus(zIKV),dengue virus 2(dENV2),mouse hepatitis virus(MHV)and severe acute respiratory syndrome coronavirus 2(SARS-CoV-2),and transformed them into *** validated the performance of our agshRNA design by evaluating antiviral efficacies of agshRNAs in cells infected with different *** the agshRNA targeting EV71 as an example,we showed that the anti-EV71 effect of agshRNA was more potent compared with the corresponding siRNA and ***,the antiviral effect of agshRNA is dependent on AGO2-processed guide RNA,which can load into the RNA-induced silencing complex(RISC).We also confirmed the antiviral effect of agshRNA in ***,this work develops a novel antiviral strategy that combines machine learning-based algorithm with agshRNA design to custom design antiviral agshRNAs with high efficiency.

关键词： AgshRNA Antiviral strategy Machine learning model

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dynamic responses of two buildings connected by viscoelastic dampers under bidirectional earthquake excitations

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Earthquake Engineering and Engineering Vibration 2014年第1期13卷 137-150页

作者： z.d. yang Eddie S.S. Lam department of Civil and Environmental Engineering The Hong Kong Polytechnic University

In this study,dynamic responses of two buildings connected by viscoelastic dampers under bidirectional excitations are extensively *** two buildings are a 10-story building and a 16-story building,with the shorter building on the *** dampers are installed at all fl oors of the shorter *** of motion are formulated using a fractional derivative model to represent the viscoelastic *** cases are considered with mass eccentricities at 0,10% and-10% with respect to the dimensions of the *** responses of the buildings are numerically predicted at different damper *** simulation results indicated that the maximum horizontal responses of the buildings without eccentricities are signifi cantly ***,torsional effects are adversely *** asymmetric buildings,the effectiveness of the connecting dampers is affected by building *** a result,mass eccentricities must be taken into account in damper *** compared with vibrations induced by unidirectional excitations,bidirectional excitations can increase the responses of coupled asymmetric *** addition,installing dampers only at the top fl oor of the shorter building may cause a sudden change in lateral stiffness of the taller ***,the story shear envelopes of the taller building are changed.

关键词： bidirectional excitations connecting dampers adjacent buildings fractional derivative

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Efficient and multiplex gene upregulation in plants through CRISPR-Cas-mediated knockin of enhancers

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Molecular Plant 2024年第9期17卷 1472-1483页

作者： Qi Yao Rundong Shen yang Shao Yifu Tian Peijin Han Xuening zhang Jian-Kang zhu Yuming Lu Shanghai Collaborative Innovation Center of Agri-Seeds Joint Center for Single-Cell BiologySchool of Agriculture and BiologyShanghai Jiao Tong UniversityShanghai 200240China Shanghai Center for Plant Stress Biology Center for Excellence in Molecular Plant SciencesChinese Academy of SciencesShanghai 201602China University of the Chinese Academy of Sciences BeijingChina College of Plant Science and Technology Huazhong Agricultural UniversityWuhan 430070China institute of Advanced Biotechnology and School of Medicine Southern University of Science and TechnologyShenzhen 518055China

Geneupregulation through genome editing is important for plant research and *** insertion of short transcriptional enhancers(STEs)into gene promoters may offer a universal solution akin to transgene-mediated overexpression while avoiding the drawbacks associated with ***,we introduce an“in locus activation”technique in rice that leverages well-characterized STEs for refined,heritable,and multiplexed gene *** address the scarcity of potent enhancers,we developed a large-scale mining approach and discovered a suite of STEs that are capable of enhancing gene expression in rice *** in locus integration of these STEs into eight rice genes resulted in substantial tran-scriptional upregulation in the edited plants,with up to 869.1-fold increases in their transcript ***-ploying a variety of STEs,we achieved delicate control of gene expression,enabling the fine-tuning of key phenotypic traits such as plant *** approach also enabled efficient multiplexed gene upregu-lation,with up to four genes activated simultaneously,significantly enhancing the nicotinamide mononucleotide metabolic ***,heritability studies from the To to T3 generations confirmed the stable and heritable nature of STE-driven gene ***,our work demon-strates that coupled with STE mining,leveraging genome editing for in locus activation and gene upregu-lation holds great promise to be widely adopted in fundamental plant research and crop breeding.

关键词： genome editing short transcriptional enhancers gene upregulation crop breeding

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Analysis of the Impact of the Blazhko Effect Both on the Van Hoof Effect and Radial Velocity Amplitude in the Star RR Lyr

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Research in Astronomy and Astrophysics 2024年第6期24卷 253-272页

作者： Y.El jariri F.L.Sefyani A.Benhida z.Benkhaldoun K.Kolenberg K.Chafouai A.Habib M.Sabil Observatoire de l'Oukaimeden LPHEAFSSMUniversitéCadi AyyadMarrakech2390Morocco Observatoire de l'Oukaimeden LPHEAFSTGUniversitéCadi AyyadMarrakech549Morocco département de physique Universitéd'Anvers Avenue Groenenborger 171Anvers2020Belgium LICPM ENSA-BMUniversitéSultan Moulay SlimaneBeni-Mellal23020Morocco

The Van Hoof effect is a phase shift existing between the radial velocity curves of hydrogen and metallic lines within the atmosphere of pulsating *** this article,we present a study of this phenomenon through the spectra of the brightest pulsating star RR Lyr of RR Lyrae stars recorded for 22 *** based ourselves,on the one hand,on 1268 spectra(41 nights of observation)recorded between the years 1994 and 1997 at the Observatory of Haute Provence(OHP,France)previously observed by Chadid and Gillet,and on the other hand on 1569 spectra(46nights of observation)recorded at our Oukaimeden Observatory(Morocco)between 2015 and *** this study,we have detected information on atmospheric dynamics that had not previously been ***,the Van Hoof effect which results in a clear correlation between the radial velocities of hydrogen and those of the metallic lines has been observed and analyzed at different Blazhko phases.A correlation between the radial velocities of different metallic lines located in the lower atmosphere has been observed as *** the first time,we were able to show that the amplitude of the radial velocity curves deduced from the lines of hydrogen and that of FeⅡ(λ4923.921?)increases toward the minimum of the Blazhko cycle and decreases toward the maximum of the same Blazhko ***,we found that the Van Hoof effect is also modulated by the Blazhko ***,toward the minimum of the Blazhko cycle the Van Hoof effect is more visible and at the maximum of the Blazhko cycle,this effect is *** also observed the temporal evolution of the amplitudes of the radial velocities of the lower and upper *** observed over a long time,we can interpret it as a function of the Blazhko phases.

关键词： stars:atmospheres stars:variables:RR Lyrae shock waves techniques:spectroscopic techniques:radial velocities stars:individual(RR Lyr)

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Numerical calculation of z-scan measurements for nonlinear media with large phase shift

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Optoelectronics Letters 2024年第3期20卷 177-182页

作者： M.d.zidan A.Allahham department of Physics Atomic Energy Commission of SyriaP.O.Box 6091DamascusSyria

We have reported the characteristics of a z-scan for the poly(azaneylylidene-acylene)(dAzA) polymer, as nonlinear medium with a large nonlinear phase shift using continuous-wave(CW) laser beam. It has been verified that the Fresnel diffraction model is applicable for analyses of z-scan measurements with dAzA polymer at high laser power. It was found that z-scan curves with peak-to-valley features appear as the applied light intensity increases in the case of a large nonlinear phase shift. The z-scan experiments were carried out using a CW laser to verify the theoretical calculations in the case of a large nonlinear phase shift model. Our results show good agreements between the experimental data and the proposed theoretical models.

关键词： nonlinear phase media

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A 128×128 SPAd LidAR sensor with column-parallel 25 ps resolution TA-AdCs

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Journal of Semiconductors 2024年第8期45卷 34-40页

作者： Na Tian zhe Wang Kai Ma Xu yang Nan Qi Jian Liu Nanjian Wu Runjiang dou Liyuan Liu State Key Laboratory of Superlattices and Microstructures Institute of SemiconductorsChinese Academy of SciencesBeijing 100049China Center of Materials Science and Optoelectronics Engineering University of Chinese Academy of SciencesBeijing 100049China

This paper presents a design of single photon avalanche diode(SPAd)light detection and ranging(LidAR)sensor with 128×128 pixels and 128 column-parallel time-to-analog-merged-analog-to-digital converts(TA-AdCs).Unlike the conventional TAC-based SPAd LidAR sensor,in which the TAC and AdC are separately implemented,we propose to merge the TAC and AdC by sharing their capacitors,thus avoiding the analog readout noise of TAC’s output buffer,improving the conversion rate,and reducing chip *** reverse start-stop logic is employed to reduce the power of the *** in a 180 nm CMOS process,our prototype sensor exhibits a timing resolution of 25 ps,a dNL of+0.30/−0.77 LSB,an INL of+1.41/−2.20 LSB,and a total power consumption of 190 mW.A flash LidAR system based on this sensor demonstrates the function of 2d/3d imaging with 128×128 resolution,25 kHz inter-frame rate,and sub-centimeter ranging precision.

关键词： 3d imaging CMOS imagers direct time-of-flight(dTOF) time-to-analog converter(TAC)

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First wetland mapping at 10-m spatial resolution in South America using multi-source and multi-feature remote sensing data

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Science China Earth Sciences 2024年第10期67卷 3252-3269页

作者： Weiwei SUN Gang yang Yuling HUANG dehua MAO Ke HUANG Lin zHU Xiangchao MENG Tian FENG Chao CHEN Yong GE department of Geography and Spatial Information Techniques Ningbo UniversityNingbo 315211China State Key Laboratory of Resources and Environmental Information System Institute of Geographic Sciences&Natural Resources ResearchChinese Academy of SciencesBeijing 100101China Natural Resources and Planning Bureau Shanghai Pudong New DistrictShanghai 200100China Key Laboratory of Wetland Ecology and Environment Northeast Institute of Geography and AgroecologyChinese Academy of SciencesChangchun 130102China Faculty of Electrical Engineering and Computer Science Ningbo UniversityNingbo 315211China School of Geography Science and Geomatics Engineering Suzhou University of Science and TechnologySuzhou 215009China

Wetland degradation has been accelerating in recent years globally. Accurate information on the geographic distribution and categories of wetlands is essential for their conservation and management. despite being the world′s fourth largest continent, South America has limited research on wetland mapping, and there is currently no available map that provides comprehensive information on wetland distribution and categories in the region. To address this issue, we used Sentinel-1, Sentinel-2 and SRTM data, developed a sample collection method and a wetland mapping method with a collection of multi-source features such as optical features, polarization features and shape features for South American wetlands. We produced a 10-m resolution wetland map based on the Google Earth Engine(GEE) platform. Our Level-1 wetland cover map accurately captured six wetland sub-categories with an overall accuracy of 96.24% and a kappa coefficient of 0.8649, while our Level-2 water cover map included five sub-categories with an overall accuracy of 97.23% and a kappa coefficient of0.9368. The results show that the total area of existing wetlands in South America is approximately 1,737,000 km~2, which is6.8% of the total land area. Among the ten wetland categories, shallow sea had the largest area(960,527.4 km~2), while aquaculture ponds had the smallest area 1513.6 km~2. Swamp had the second largest area(306,240.1 km~2). Brazil, Argentina,Venezuela, Bolivia, and Colombia were found to have the largest wetland areas, with Brazil and Colombia having the most diverse wetland categories. This product can serve as baseline data for subsequent monitoring, management, and conservation of South American wetlands.

关键词： Wetland mapping Google Earth Engine Sentinel imagery South America

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High-Efficiency dynamic Terahertz deflector Utilizing a Mechanically Tunable Metasurface

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Research 2024年第3期2023卷 585-594页

作者： zhenci Sun Chao Liang Chen Chen Xiayu Wang Enze zhou Xiaomeng Bian Yuanmu yang Rui You Xiaoguang zhao Jiahao zhao zheng You department of Precision Instrument Tsinghua UniversityBeijing 100084China State Key Laboratory of Precision Measurement Technology and Instruments Tsinghua UniversityBeijing 100084China Beijing Advanced Innovation Center for Integrated Circuits Beijing 100084China School of Instrument Science and Opto-Electronic Engineering Beijing Information Science and Technology UniversityBeijing 100016China.

Terahertz (THz) wave manipulation, especially the beam deflection, plays an essential role in various applications, such as next-generation communication, space exploration, and high-resolution imaging. Current THz optical components and devices are hampered by their large bulk sizes and passive responses, limiting the development of high-performance, miniaturized THz microsystems. Tunable metasurfaces offer a powerful dynamic optical platform for controlling the propagation of electromagnetic waves. In this article, we presented a mechanically tunable metasurface (MTM), which can achieve terahertz beam deflection and vary the intensity of the anomalous reflected terahertz wave by changing the air gap between the metallic resonator (MR) array with phase discontinuities and Au ground plane. The absence of lossy spacer materials substantially enhances deflection efficiency. The device was fabricated by a combination of the surface and bulk-micromachining processes. The THz beam steering capability was characterized using terahertz time domain spectroscopy. When the air gap is 50 μm, the maximum deflection coefficient reaches 0.60 at 0.61 THz with a deflection angle of ~44.5°, consistent with theoretical predictions. We further established an electrically tunable miniaturized THz device for dynamic beam steering by introducing a micro voice coil motor to control the air gap continuously. It is shown that our designed MTM demonstrates a high modulation depth of deflection coefficient (~ 62.5%) in the target steered angle at the operating frequency. Our results showcase the potential of the proposed MTM as a platform for high-efficiency THz beam manipulation.

关键词： tunable Efficiency resonator

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A Review on Engineering Transition Metal Compound Catalysts to Accelerate the Redox Kinetics of Sulfur Cathodes for Lithium–Sulfur Batteries

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Nano-Micro Letters 2024年第5期16卷 300-332页

作者： Liping Chen Guiqiang Cao Yong Li Guannan zu Ruixian duan yang Bai Kaiyu Xue Yonghong Fu Yunhua Xu Juan Wang Xifei Li Shaanxi Key Laboratory of Nanomaterials and Nanotechnology Xi’an University of Architecture and TechnologyXi’an 710055People’s Republic of China Institute of Advanced Electrochemical Energy and School of Materials Science and Engineering Xi’an University of TechnologyXi’an 710048People’s Republic of China Yulin University Yulin 719000People’s Republic of China School of Materials Science and Engineering Fuzhou UniversityFuzhou 350108People’s Republic of China

Engineering transition metal compounds(TMCs)catalysts with excellent adsorption-catalytic ability has been one of the most effec-tive strategies to accelerate the redox kinetics of sulfur ***,this review focuses on engineering TMCs catalysts by cation doping/anion doping/dual doping,bimetallic/bi-anionic TMCs,and TMCs-based heterostructure *** is obvious that introducing cations/anions to TMCs or constructing heterostructure can boost adsorption-catalytic capacity by regulating the electronic structure including energy band,d/p-band center,electron filling,and valence ***,the elec-tronic structure of doped/dual-ionic TMCs are adjusted by inducing ions with different electronegativity,electron filling,and ion radius,resulting in electron redistribution,bonds reconstruction,induced vacancies due to the electronic interaction and changed crystal structure such as lat-tice spacing and lattice *** from the aforementioned two strategies,heterostructures are constructed by two types of TMCs with different Fermi energy levels,which causes built-in electric field and electrons transfer through the interface,and induces electron redistribution and arranged local atoms to regulate the electronic ***,the lacking studies of the three strategies to comprehensively regulate electronic structure for improving catalytic performance are pointed *** is believed that this review can guide the design of advanced TMCs catalysts for boosting redox of lithium sulfur batteries.

关键词： Lithium–sulfur battery Redox kinetic Transition metal compounds catalyst Multiple metals/anions

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Water Vapour Solubility in Tundish Slags

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Journal of Iron and Steel Research International 1998年第2期5卷 9-16页

作者： yang Yindong daya z A Sommerville I d McLean A dept.of Metallurgy and Materials Science University of TorontoOntarioCanada M5S 3E4

In the present work,the solubility of water vapour in tundish slag has been studied in the temperature range from 1 400 C to 1 600 C by a thermogravimetric *** water vapour capacity of the slags was calculated and compared with the data from earlier *** results confirm that the solubility of water vapour in slags increases with increasing water vapour *** relation between the two parameters obeys Sievert’s *** slags with optical basicities from 0.5 to 0.8,a regression equation was obtained to express the relation between the water vapour capacity and optical basicity of slags.A tundish slag system with the desired properties can be designed according to the correlations between the optical basicity and various capacities of slags.

关键词： tundish slag water vapour capacity optical basicity

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