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Regularized quantile regression for SNP marker estimation of pig growth curves

Journal of Animal Science and Biotechnology 2017年第4期8卷 824-832页

作者： L.M.A.Barroso M.Nascimento A.c.c.Nascimento1 f.f.Silva N.V.L.Serao c.D.cruz M.D.V.Resende f.L.Silva c.f.azevedo P.S.Lopes S.E.f.Guimaraes Department of Statistics Federal University of Vicosa Av. P H Rolfs s/nUniversity Campus Vicosa MG 36570-000 Brazil Department of Animal Science Federal University of Vicosa Av. P H Rolfs s/n University CampusVicosa MG 36570-000 Brazil Department of Animal Science Iowa State University Kildee Hall 50011 Ames Iowa USA Department of General Biology Federal University of Vicosa Av. P H Rolfs s/n University CampusVicosa MG 36570-000 Brazil Embrapa forestry Estrada da Ribeira km 111Colombo PR Brazil. Department of Plant Science Federal University of Vicosa Av. P H Rolfs s/n University Campus Vicosa MG 36570-000 Brazil

Background: Genomic growth curves are general y defined only in terms of population mean; an alternative approach that has not yet been exploited in genomic analyses of growth curves is the Quantile Regression(QR). This methodology allows for the estimation of marker effects at different levels of the variable of interest. We aimed to propose and evaluate a regularized quantile regression for SNP marker effect estimation of pig growth curves, as well as to identify the chromosome regions of the most relevant markers and to estimate the genetic individual weight trajectory over time(genomic growth curve) under different quantiles(levels).Results: The regularized quantile regression(RQR) enabled the discovery, at different levels of interest(quantiles), of the most relevant markers al owing for the identification of QTL regions. We found the same relevant markers simultaneously affecting different growth curve parameters(mature weight and maturity rate): two(ALGA0096701 and ALGA0029483)for RQR(0.2), one(ALGA0096701) for RQR(0.5), and one(ALGA0003761) for RQR(0.8). Three average genomic growth curves were obtained and the behavior was explained by the curve in quantile 0.2, which differed from the ***: RQR allowed for the construction of genomic growth curves, which is the key to identifying and selecting the most desirable animals for breeding purposes. furthermore, the proposed model enabled us to find, at different levels of interest(quantiles), the most relevant markers for each trait(growth curve parameter estimates) and their respective chromosomal positions(identification of new QTL regions for growth curves in pigs). These markers can be exploited under the context of marker assisted selection while aiming to change the shape of pig growth curves.

关键词： Genome association Growth curve Pig QTL Regularized quantile regression

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Radiology科学论著摘要(2022年11月、12月杂志)

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国际医学放射学杂志 2023年第1期46卷 103-114页

作者： D.Wendell E.Jenista H.W.Kim E.L.chen c.f.azevedo Y.Kaolawanich 陈红

乳腺成像MR扩散加权成像在预测经活检证实的乳腺导管原位癌分期中的价值(DOI:10.19300/j.2023.r1101)Diffusion-weighted Breast MRI in Prediction of Upstaging in Women with Biopsy-proven Ductal carcinoma in Situ(DOI:10.1148/radiol.213174)***,***,***,***,***,***,et al.摘要术前准确预测活检证实的乳腺导管原位癌(DcIS)的分期,对于制定手术方案至关重要,但一直缺少采用MRI特征建立的预测模型。目的纳入活检证实的DcIS病人,建立并验证基于术前乳腺MRI预测肿瘤分期的模型,并选择可能受益的高危病人在手术中进行前哨淋巴结活检。

关键词：乳腺导管原位癌前哨淋巴结活检高危病人肿瘤分期手术方案

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Rotating effects on the photoionization cross-section of a 2D quantum ring

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communications in Theoretical Physics 2024年第10期76卷 153-159页

作者： carlos Magno O Pereira frankbelson dos S azevedo Luís fernando c Pereira Edilberto O Silva Departamento de física Universidade Federal do Maranh?o

In this article, we investigate the nonrelativistic quantum motion of a charged particle within a rotating frame, taking into account the Aharonov–Bohm(AB) effect and a uniform magnetic field. Our analysis entails the derivation of the equation of motion and the corresponding radial equation to describe the system. Solving the resulting radial equation enables us to determine the eigenvalues and eigenfunctions, providing a clear expression for the energy levels. furthermore,our numerical analysis highlights the substantial influence of rotation on both energy levels and optical properties. Specifically, we evaluate the photoionization cross-section with and without the effects of rotation. To elucidate the impact of rotation on the photoionization process of the system, we present graphics that offer an appealing visualization of the intrinsic nature of the physics involved.

关键词： Aharonov-Bohm effect photoionization cross-section quantum ring rotating effect

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There is more to the knee joint than just the quadriceps:A systematic review with meta-analysis and evidence gap map of hamstring strength,flexibility,and morphology in individuals with gradual-onset knee disorders

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Journal of Sport and Health Science 2024年第4期13卷 521-536页

作者： Helder S.Lopes Marina c.Waiteman Liliam B.Priore Neal R.Glaviano David M.Bazett-Jones Ronaldo V.Briani fabio M.azevedo School of Science and Technology Physical Therapy DepartmentSao Paulo State University(UNESP)Presidente Prudente 19060-900Brazil Department of Kinesiology College of AgricultureHealth and Natural ResourcesUniversity of ConnecticutStorrsCT 06269USA School of Exercise and Rehabilitation Sciences College of Health and Human ServicesUniversity of ToledoToledoOH 43606USA

Background:Impairments in hamstring strength,flexibility,and morphology have been associated with altered knee biomechanics,pain,and *** the presence of these impairments in individuals with gradual-onset knee disorders is important and may indicate targets for assessment and *** systematic review aimed to synthesize the literature to determine the presence of impairments in hamstring strength,flexibility,and morphology in individuals with gradual-onset knee ***:five databases(MEDLINE,Embase,cINAHL,SPORTDiscus,and Web of Science)were searched from inception to September *** studies comparing hamstring outcomes(e.g.,strength,flexibility,and/or morphology)between individuals with gradual-onset knee disorders and their unaffected limbs or pain-free controls were ***-analyses for each knee disorder were ***-level certainty was assessed using the Grading of Recommendations Assessment,Development,and Evaluation,and evidence gap maps were ***:Seventy-nine studies across 4 different gradual-onset knee disorders(i.e.,knee osteoarthritis(OA),patellofemoral pain(PfP),chondromalacia patellae,and patellar tendinopathy)were *** with knee OA presented with reduced hamstring strength compared to pain-free controls during isometric(standard mean difference(SMD)=-0.76,95%confidence interval(95%cI):-1.32 to-0.21)and concentric contractions(SMD=-0.97,95%cI:-1.49 to-0.45).Individuals with PfP presented with reduced hamstring strength compared to painfree controls during isometric(SMD=-0.48,95%cI:-0.82 to-0.14),concentric(SMD=-1.07,95%cI:-2.08 to-0.06),and eccentric contractions(SMD=-0.59,95%cI:-0.97 to-0.21).No differences were observed in individuals with patellar *** with PfP presented with reduced hamstring flexibility when compared to pain-free controls(SMD=-0.76,95%cI:-1.15 to-0.36).Evidence gap maps identified insufficient evidence for chondromalacia patel

关键词： chondromalacia patellae Knee flexors Knee osteoarthritis Patellar tendinopathy Patellofemoral pain

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All-electron basis sets for H to Xe specific for ZORA calculations:Applications in atoms and molecules

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chinese Physics B 2024年第8期33卷 238-246页

作者： c.S.Gomes f.E.Jorge A.canal Neto Departamento de fisica Universidade Federal do Espirito Santo29075-910 VitoriaESBrazil Departamento de fisica Instituto de Ciencias Exatas e BiologicasUniversidade Federal de Ouro Preto Campus Universitario Morro do Cruzeiro35402-136 Ouro PretoMGBrazil

A segmented basis set of quadruple zeta valence quality plus polarization functions(QZP)for H through Xe was developed to be used in conjunction with the ZORA *** set was augmented with diffuse functions to describe electrons farther away from the nuclei *** the ZORA-ccSD(T)/QZP-ZORA theoretical model,atomic ionization energies and bond lengths,harmonic vibrational frequencies,and atomization energies of some molecules were *** addition of core-valence corrections has been shown to improve the agreement between theoretical and experimental results for molecular *** atomization energies,a similar observation emerges when considering spin-orbit *** the augmented QZP-ZORA set,static mean dipole polarizabilities of a set of atoms were calculated and compared with previously published recommended and experimental *** evaluations of the ZORA and Douglas–Kroll–Hess Hamiltonians were made for each property studied.

关键词： QZP-ZORA and AQZP-ZORA basis sets elements from H to Xe ccSD(T)method atomic and molecular properties

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Investigation of Potential factors on South Atlantic Magnetic Anomaly

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Open Journal of Earthquake Research 2024年第1期13卷 1-26页

作者： Marilia Hagen Anibal azevedo Instituto de física Universidade do Estado do Rio de Janeiro Rio de Janeiro Brazil faculdade de ciencias Aplicadas da Unicamp Limeira Brazil

The first part of this investigation analyzes the deep earthquake occurrences in Nazca subducting under South America. The depth taken is to get information about possible influences from the unknown materials and formations under the crust. The results revealed the presence of malleable material, which is unbreakable and, therefore, unable to trigger earthquakes. The structure of those elements is diamagnetic, attracting ionized particles from the Van Allen belt region in the ionosphere. The charged particles travel towards Earth’s surface, enhanced during the geomagnetic storms. The South Atlantic Magnetic Anomaly (SAMA) found that the deformation suffered by the anomaly moving from South Africa to South America is, possibly due to a bulge of unknown flexible material buried underneath the oceanic and continental crust. The continental part is strengthening in weakness because the background also has a high amount of diamagnetic material in this region, and it would not happen over the Atlantic Ocean, where part of the deformation is placed.

关键词： Ultra-Deep Earthquakes (UDQ) Diamagnetism South Atlantic Magnetic Anomaly (SAMA)

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El Niño-Southern Oscillation (ENSO) Variations and climate changes Worldwide

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Atmospheric and climate Sciences 2024年第2期14卷 233-249页

作者： Marilia Hagen Anibal azevedo (Retired) Instituto de fí sica Universidade do Estado do Rio de Janeiro Rio de Janeiro Brazil faculdade de ciê ncias Aplicadas da Unicamp Limeira Brazil

This investigation aims to study the El-Niño-Southern Oscillation (ENSO) events in these three phases: El Niño, La Niña, and neutral. Warm and cold events relate to the Spring/Summer seasons. This paper will search for connections between the ENSO events and climate anomalies worldwide. There is some speculation that those events would be necessary for the climate anomalies observed worldwide. After analyzing the data from the reports to the ENSO, it shows almost periodicity from 1950-2023. We emphasized the occurrence of El Niño two years, when it was most prominent, and the climate anomalies (following NOAA maps), 2015 and 2023. The results indicated that the observed climate anomalies couldn’t be linked to the abnormal events observed. The worldwide temperatures in those years enhanced mostly in 2023. It shows an abnormal behavior compared with all the years scrutinized and analyzed since the records began. Therefore, there must be unknown factors beyond ENSO that rule the worldwide temperatures and the climate anomalies observed.

关键词： ENSO Southern Oscillation El Niño climate Anomalies

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External factors Influencing the Motion of Tectonic Plates

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Open Journal of Earthquake Research 2024年第3期13卷 150-169页

作者： Marilia Hagen Anibal azevedo Instituto de fsica Universidade do Estado do Rio de Janeiro Rio de Janeiro Brazil faculdade de cincias Aplicadas da Unicamp Limeira Brazil

The investigation aims to understand how external forces influence tectonic plate movement, causing earthquakes and volcanic eruptions. Our emphasis was on calculating perigee forces at various moon-Earth distances. Our initial concern is the fluctuating perigee distance between the Moon and Earth. Later, we will cover Earth’s mass fluctuations caused by crustal inhomogeneity. Gravitational force depends on distance and Earth’s mass variations. Wobbling’s Earth and translation around Sun are additional factors. Tidal variations from the Moon trigger subduction zone earthquakes. Volcanoes in the Ring of fire are influenced by plate movement on fractures and faults.

关键词： Sun Moon-Earth forces Tectonic Plate Motion Seismic Activity Volcanoes

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Opposite latitudinal gradients for species richness and phylogenetic diversity of endemic snakes in the Atlantic forest

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current Zoology 2024年第4期70卷 522-530页

作者： JoséThales da Motta Portillo JosuéAnderson Rēgo azevedo fausto Erritto Barbo Ricardo J.Sawaya Programa de Pos-Graduacao em Biologia Animal Instituto de BiocienciasLetras e Ciencias ExatasUniversidade Estadual Paulista"Julio de Mesquita Filho"Rua Cristovao Colombo2265Sao Josédo Rio PretoSao Paulo 15054-000Brazil Programa de colecoes cientificas Biologicas Coordenagao de BiodiversidadeInstituto Nacional de Pesquisas da AmazoniaAvenida AndréAraujo2936ManausAmazonas 69067-375Brazil Gothenburg Global Biodiversity centre University of GothenburgBox 461GothenburgVastra Gotaland SE-40530Sweden Instituto federal de Educacao Ciencia e Tecnologia de Minas GeraisRodovia Machado-Paraguacukm 3MachadoMinas Gerais 37750-000Rraizil centro de ciencias Naturais e Humanas UniversidadeFederaldo ABCRua Arcturus03Sao Bernardo do CampoSao Paulo09606-070Brazil

The decrease in species richness toward higher latitudes is an expected biogeographical *** pattern could be related to particular envi-ronmental constraints and the evolutionary history of ***,species richness does not fully represent the evolutionary history of the clades behind their *** diversity better clarifies the role of historical factors in biogeographical *** analyzed envi-ronmental and historical drivers related to latitudinal variation in species richness and phylogenetic diversity of Atlantic forest endemic *** implemented species distribution models,from voucherbased locality points,to map the snake ranges and *** used generalized additive mixed models to evaluate the relationships among the diversity metrics and area,topographical roughness,and past climate change velocity since the Last Maximum Glacial in the Atlantic forest latitudinal *** to the expected general pattern,species richness was higher toward higher latitudes,being positively related to past climatic *** richness also increased with total area and higher topographical *** diversity,on the other hand,showed opposite relationships related to the same *** diversity increased with lower climatic stability in lower ***,dimensions of diversity were affected in different ways by historical and environmental constraints in this unique and threatened biodiversity hotspot.

关键词： biodiversity latitudinal gradient neotropical region phylogenetic diversity serpents species richness.

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Effects of dust controls on respirable coal mine dust composition and particle sizes:case studies on auxiliary scrubbers and canopy air curtain

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International Journal of coal Science & Technology 2024年第3期11卷 86-101页

作者： f.Animah c.Keles W.R.Reed E.Sarver Department of Mining and Minerals Engineering Virginia Polytechnic Institute&State UniversityBlacksburgVAUSA National Institute of Occupational Safety and Health(NIOSH) PittsburghPAUSA

control of dust in underground coal mines is critical for mitigating both safety and health *** decades,the National Institute of Occupational Safety and Health(NIOSH)has led research to evaluate the effectiveness of various dust control technologies in coal *** studies have included the evaluation of auxiliary scrubbers to reduce respirable dust downstream of active mining and the use of canopy air curtains(cAcs)to reduce respirable dust in key operator *** detailed dust characterization was not a focus of such studies,this is a growing area of *** preserved filter samples from three previous NIOSH studies,the current work aims to explore the effect of two different scrubbers(one wet and one dry)and a roof bolter cAc on respirable dust composition and particle size *** this,the preserved filter samples were analyzed by thermogravimetric analysis and/or scanning electron microscopy with energy dispersive *** indicate that dust composition was not appreciably affected by either scrubber or the ***,the wet scrubber and cAc appeared to decrease the overall particle size *** an effect of the dry scrubber was not consistently observed,but this is probably related to the particular sampling location downstream of the scrubber which allowed for significant mixing of the scrubber exhaust and other return *** from the insights gained with respect to the three specific dust control case studies revisited here,this work demonstrates the value of preserved dust samples for follow-up investigation more broadly.

关键词： Respirable dust Dust control SEM–EDX Scrubber canopy air curtain Silica

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