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Genotype×year interaction of pod and seed mass and stability of Pongamia pinnata families in a semi-arid region

Journal of Forestry Research 2020年第4期31卷 1333-1346页

作者： G.R.Rao b.sarkar b.M.K.Raju P.Sathi Reddy A.V.M.Subba Rao Jessie Rebecca ICAR-Central Research Institute for Dryland Agriculture SantoshnagarHyderabadTelangana State 500059India Tropical Forest Research Institute(TFRI) Indian Council of Forestry Research&EducationMinistry of EnvironmentForest&Climate ChangeGovt.of IndiaJabalpur 482021India

Sixteen pongamia families were evaluated in a field experiment for eight consecutive years in dryland conditions to identify stable,high-yielding *** trial was conducted in a randomized complete block design with three *** family,consisting of nine trees per replication,was planted at a spacing of3 m x 3 *** stability was analyzed using(1)Eberhart and Russel’s regression coefficient(β_i)and deviation from regression(S_d^2),(2)Wrike’s ecovalence(W_i);(3)Shukla stability variance(σ_i^2);and(4)Piepho and Lotito’s stability index(L_i).Families were also analyzed for adaptability and stability using AMMI and GGE biplots graphical *** study revealed significant variances due to family and family x year interaction for pod and seed *** performed differently and ranked differently across *** performance of families was influenced by both genetic factor and environmental conditions in different *** families tested,TNMP20,Acc14,TNMP14 and Acc30 were high yielders for pods,and Acc14,Acc30,TNMP6,RAK19 and TNMP14 were high for seed *** to the Eberhart and Russell model,Acc30,TNMP14 and TNMP3 were stable across *** the graphical view of family x year interaction based on AMMI methods,TNMP3,TNMP4 and TNMP14 had greater stability with moderate seed yield,and Acc14 and Acc30 had moderate stability with high seed *** the other hand,GGE biplots revealed Acc14,Acc30 and TNMP14 as high yielders with moderate *** and GGE biplots were able to capture nonlinear parts of the family x year interaction that were not be captured by the Eberhart and Russel model while also identifying stable *** on different methodologies,Acc14,Acc30 and TNMP14 were identified as high yielding and stable families for promoting pongamia cultivation as a biofuel crop for semi-arid regions.

关键词： biofuel Pongamia Genetic diversity Stability AMMI (additive main effects multiplicative interaction) GGE biplots Multi-year trial SVD(singular value decomposition)

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COVID-19 mutations:An overview

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World Journal of Methodology 2024年第3期14卷 7-22页

作者： Malay sarkar Irappa Madabhavi Department of Pulmonary Medicine Indira Gandhi Medical CollegeShimla 171001Himachal PradeshIndia Department of Medical and Pediatric Oncology and Hematology J N Medical Collegeand KAHERBelagaviKarnataka 590010India Department of Medical and Pediatric Oncology and Hematology Kerudi Cancer HospitalBagalkotKarnataka 587103India

The severe acute respiratory syndrome coronavirus-2(SARS-CoV-2)belongs to the genus beta coronavirus and the family of *** is a positive-sense,non-segmented single-strand RNA *** common types of human coronaviruses circulate globally,particularly in the fall and winter *** are responsible for 10%-30% of all mild upper respiratory tract infections in *** are 229E,NL63 of the Alfacoronaviridae family,OC43,and HKU1 of the betacoronaviridae ***,there are three highly pathogenic human coronaviruses:SARS-CoV-2,Middle East respiratory syndrome coronavirus,and the latest pandemic caused by the SARS-CoV-2 *** viruses,including SARS-CoV-2,have the inherent tendency to ***-CoV-2 is still evolving in ***,due to the development of herd immunity,prior infection,use of medication,vaccination,and antibodies,the viruses are facing immune *** the replication process and due to immune pressure,the virus may undergo *** SARS-CoV-2 variants,including the variants of concern(VOCs),such as b.1.1.7(Alpha),b.1.351(beta),b.1.617/b.1.617.2(Delta),P.1(Gamma),and b.1.1.529(Omicron)have been reported from various parts of the *** VOCs contain several important mutations;some of them are on the spike *** mutations may lead to enhanced infectivity,transmissibility,and decreased neutralization efficacy by monoclonal antibodies,convalescent sera,or *** may also lead to a failure of detection by molecular diagnostic tests,leading to a delayed diagnosis,increased community spread,and delayed *** searched PubMed,EMbASE,Covariant,the Stanford variant Database,and the CINAHL from December 2019 to February 2023 using the following search terms:VOC,SARS-CoV-2,Omicron,mutations in SARS-CoV-2,*** review discusses the various mutations and their impact on infectivity,transmissibility,and neutralization efficacy.

关键词： Variant of concern SARS-CoV-2 Omicron N501Y mutation E484K mutation

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A bayesian model calibration framework for stochastic compartmental models with both time-varying and timeinvariant parameters

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Infectious Disease Modelling 2024年第4期9卷 1224-1249页

作者： brandon Robinson Philippe bisaillon Jodi D.Edwards Tetyana Kendzerska Mohammad Khalil Dominique Poirel Abhijit sarkar Department of Civil and Environmental Engineering Carleton UniversityOttawaON K1S 5B6Canada School of Epidemiology and Public Health University of Ottawa and University of Ottawa Heart InstituteOttawaOntarioCanada ICES OttawaOntarioCanada The Ottawa Hospital Research Institute OttawaOntarioCanada Department of Medicine Faculty of MedicineDivision of RespirologyUniversity of OttawaOttawaOntarioCanada Quantitative Modeling&Analysis Department Sandia National LaboratoriesLivermoreCAUSA Department of Mechanical and Aerospace Engineering Royal Military College of CanadaKingstonONCanada

We consider state and parameter estimation for compartmental models having both timevarying and time-invariant *** this manuscript,we first detail a general bayesian computational framework as a continuation of our previous ***,this framework is specifically tailored to the susceptible-infectious-removed(SIR)model which describes a basic mechanism for the spread of infectious diseases through a system of coupled nonlinear differential *** SIR model consists of three states,namely,the susceptible,infectious,and removed *** coupling among these states is controlled by two parameters,the infection rate and the recovery *** simplicity of the SIR model and similar compartmental models make them applicable to many classes of infectious ***,the combined assumption of a deterministic model and time-invariance among the model parameters are two significant impediments which critically limit their use for long-term *** tendency of certain model parameters to vary in time due to seasonal trends,non-pharmaceutical interventions,and other random effects necessitates a model that structurally permits the incorporation of such time-varying *** to this,is the need for a robust mechanism for the estimation of the parameters of the resulting model from *** this end,we consider an augmented state vector,which appends the time-varying parameters to the original system states whereby the time evolution of the time-varying parameters are driven by an artificial noise process in a standard *** between time-varying and time-invariant parameters in this fashion limits the introduction of artificial dynamics into the system,and provides a robust,fully bayesian approach for estimating the timeinvariant system parameters as well as the elements of the process noise covariance *** computational framework is implemented by leveraging the robustness of the Markov chain Mont

关键词： Time-varying parameter estimation bayesian inference Stochastic compartmental models

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Study of flow characteristics within randomly distributed submerged rigid vegetation

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Journal of Hydrodynamics 2019年第2期31卷 358-367页

作者： Paromita Chakraborty Arindam sarkar School of Civil Engineering Kalinga Institute of Industrial Technology(KIIT)Deemed to be UniversityBhubaneswarOdishaIndia School of Infrastructure Indian Institute of Technology(IIT)Bhubaneswar AurgulBhubaneswarOdishaIndia

Flow through submerged rigid vegetation has been studied both analytically and *** Reynolds stress,present in the governing equation,has been modeled using one of the turbulent stress equations,adopted in numerous *** adva ntage of this turbulent stress model is to replace the mixing length non linear term of the stress with a linear relatio n between stress and the velocity *** velocity field and shear stress are obtained by solving the governing force balance equation numerically.A correlation,validated with the experimental results,has been developed for the relevant non-dimensional numbers.

关键词： Submerged vegetation Reynolds stress drag force stream wise velocity

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Laser-induced plasma electron number density:Stark broadening method versus the Saha-boltzmann equation

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Plasma Science and Technology 2017年第2期19卷 43-51页

作者： Arnab.sarkar Manjeet SINGH Fuel Chemistry Division Bhabha Atomic Research CentreMumbai 400 085India

We report spectroscopic studies on plasma electron number density of laser-induced plasma produced by ns-Nd：YAG laser light pulses on an aluminum sample in air at atmospheric pressure. The effect of different laser energy and the effect of different laser wavelengths were compared. The experimentally observed line profiles of neutral aluminum have been used to extract the excitation temperature using the boltzmann plot method, whereas the electron number density has been determined from the Stark broadened as well as using the Saha-boltzmann equation （SbE）. Each approach was also carried out by using the AI emission line and Mg emission lines. It was observed that the,SbE method generated a little higher electron number density value than the Stark broadening, method, but within the experimental uncertainty range. Comparisons of Ne determined by the two methods show the presence of a linear relation which is independent of laser energy or laser wavelength. These results show the applicability of the SbE method for Are determination, especially when the system does not have any pure emission lines whose electron impact factor is known, Also use of Mg lines gives superior results than Al lines.

关键词： plasma parameter laser induced plasma plasma electron density Saha-boltzmannmethod Stark broadening method

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Equivariant Cobordism of Torus Orbifolds

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Chinese Annals of Mathematics,Series b 2021年第6期42卷 861-890页

作者： Soumen sarkar DongYoup SUH Department of Mathematics Indian Institute of Technology MadrasChennai 600036India Department of Mathematical Sciences KAISTDaejeon 305701Republic of Korea

Torus orbifolds are topological generalizations of symplectic toric *** authours give a construction of smooth orbifolds with torus actions whose boundary is a disjoint union of torus orbifolds using a toric topological *** a result,they show that any orientable locally standard torus orbifold is equivariantly cobordant to some copies of orbifold complex projective *** also discuss some further equivariant cobordism results including the cases when torus orbifolds are actually torus manifolds.

关键词： Manifold with corners Torus action Torus orbifolds Equivariant cobordism

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On Universality of Quantum Fourier Transform

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Chinese Physics Letters 2012年第3期29卷 17-20页

作者： Arpita Maitra Santanu sarkar Applied Statistics Unit Indian Statistical Institute203 B T RoadKolkata 700108India

A methodology is presented to obtain the basis of qudits which are admissible to quantum Fourier transform(QFT)in the sense that the set of such kets are related by the QFT in the same way as the kets of the computational *** first study this method for qubits to characterize the ensemble that works for the Hadamard transformation(QFT for two dimension).In this regard we identify certain incompleteness in the result of Maitra and Parashar(*** Inform.4(2006)653).Next we characterize the ensemble of qutrits for which QFT is ***,some theoretical results related to higher dimensions are also *** the unitary matrix Un related to QFT,the issue boils down to the problem of characterizing matrices that commute with Un.

关键词： ensemble admissible dimensions

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A remote sensing based analysis of climate change in Sikkim supported by evidence from the field

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Journal of Mountain Science 2021年第5期18卷 1256-1267页

作者： Rumia bASU Gourav MISRA Dipto sarkar Department of Earth and Ocean Sciences National University of IrelandH91TK33 GalwayIreland Department of Geography University College CorkT12K8AF CorkIreland Department of Geography and Environmental Studies Carleton UniversityK1S5B6 OttawaCanada

The Himalayas hailed as the‘water towers of the world’feed many perennial rivers which form the lifeline of the Indian *** change induced rising global temperatures and changing rainfall patterns are currently threatening the glaciers that feed the *** combination of these factors is causing water stresses to a part of the world which is usually considered water *** there are some large-scale studies done in the Himalayas,regional analysis of changing rainfall patterns and their impacts on vegetation and agriculture is *** we focus on the Indian state of Sikkim located in the Eastern Himalayas to evaluate these issues using mixed *** use satellite data from PERSIANN and MODIS to characterise the regional rainfall,vegetation,and surface temperature trends between 2001 and *** the analysis shows overall declining rainfall trends across most land cover classes,the trends in temperature are mostly positive for the period of study,with winter Land Surface Temperature(LST)values showing the largest area with marginally significant(pbserved for ***,the interviews corroborate that even agriculture is impacted,implying that the trends continue at finer spatial scales *** lack of government support for adaptation and mitigation is also lamented placing the communities at a precarious position to continuing climate change.

关键词： Climate change Rainfall Temperature Vegetation Mixed methods Sikkim

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Recent advances in semimetallic pnictogen (As, Sb, bi) based anodes for sodium-ion batteries: Structural design, charge storage mechanisms, key challenges and perspectives

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Nano Research 2021年第11期14卷 3690-3723页

作者： Samrat sarkar Swagata Roy Yufeng Zhao Jiujun Zhang Institute for Sustainable Energy & College of Sciences Shanghai University Shanghai China

In the recent times sodium ion batteries(SIbs)have come to the forefront as an economic and resourceful alternative to lithium-ion batteries(LIbs)for powering portable electronic devices and large-scale grid *** the specific capacity,energy density and long cycle life of batteries depend upon the performance of anode materials;their quest is the ultimate need of the *** the anode materials,the semimetallic pnictogens(As,Sb,bi)and their compounds offer high gravimetric/volumetric capacities,but suffer from undesired volume expansion and inferior electrical ***,this paper reviews the recent progress in semimetallic pnictogens as alloying anodes and their compounds mainly as conversion-alloying *** debatable sodiation mechanisms(intercalation or alloying)have been presented with emphasis on in situ/ex situ advanced characterization methods well supported by theoretical modeling and *** reviewed electrochemical reaction mechanisms,coherent structural designs and engineering provide a vital understanding of the electrochemical processes of Na^(+) ion *** existing challenges and perspectives are also presented,and several research directions are proposed from the aspects of special morphological design,employing conductive substrates,electrolyte additives and reducing particle size for technical and commercial success of SIbs.

关键词： sodium-ion battery anode pnictogen arsenic antimony bismuth

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Providing meaningful survival benefit to hepatocellular carcinoma patients:combination therapy of future

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Hepatobiliary Surgery and Nutrition 2022年第5期11卷 779-781页

作者： Devanand sarkar Department of Human and Molecular Genetics Massey Cancer Center and VCU Institute of Molecular Medicine(VIMM)Virginia Commonwealth UniversityRichmondVAUSA

Hepatocellular carcinoma(HCC)is a highly fatal disease,the mortality of which runs parallel to its ***,viral hepatitis has been the major cause of HCC(1).Vaccine is available for hepatitis b virus(HbV)and a drug cocktail is effective in bringing down blood hepatitis C virus(HCV)level to *** successful application of mRNA vaccine for COVID-19,it is a matter of time before an effective vaccine for HCV is *** these positive advancements,the incidence of HCC is continuing to rise because of HCC development as a direct consequence of non-alcoholic steatohepatitis(NASH)caused by obesity(1).While viral hepatitis is waning in the Western countries,obesity is now a global problem,requiring impactful treatment regimen for HCC that can provide meaningful survival benefit.

关键词： vaccine obesity mortality

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