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Comparative analysis of 12 water lily plastid genomes reveals genomic divergence and evolutionary relationships in early flowering plants

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Marine Life Science & Technology 2024年第3期6卷 425-441页

作者： Weicai Song Wenbo Shi Huan Wang Zirui Zhang Ruiqing Tao Jin Liu Shuo Wang Michael S.engel Chao Shi College of Marine Science and Biological Engineering Qingdao University of Science and TechnologyQingdao 266042China Plant Germplasm and Genomics Center Germplasm Bank of Wild Species in Southwest ChinaKunming Institute of BotanyThe Chinese Academy of SciencesKunming 650204China Yunnan Institute of Tropical Crops Xishuangbanna 666100China American Museum of Natural History New YorkNY 10024-5192USA Natural History Museum and Department of Ecology&Evolutionary BiologyUniversity of KansasLawrenceKS 66045USA

The aquatic plant Nymphaea,a model genus of the early flowering plant lineage Nymphaeales and family Nymphaeaceae,has been extensively ***,the availability of chloroplast genome data for this genus is incomplete,and phylogenetic relationships within the order Nymphaeales remain *** this study,12 chloroplast genomes of Nymphaea were assembled and analyzed for the first *** genomes were 158,290-160,042 bp in size and contained 113 non-repeat genes,including 79 protein-coding genes,30 tRNA genes,and four rRNA *** also report on codon usage,RNA editing sites,microsatellite structures,and new repetitive sequences in this *** genomics revealed that expansion and contraction of IR regions can lead to changes in the gene ***,it was observed that the highly variable regions of the chloroplast genome were mainly located in intergenic ***,the phylogenetic tree showed the order Nymphaeales was divided into three families,and the genus Nymphaea can be divided into five(or three)subgenera,with the subgenus Nymphaea being the *** divergence times of nymphaealean taxa were analyzed,with origins of the order Nymphaeales and family Nymphaeaceae being about 194 and 131 million years,*** results of the phylo-genetic analysis and estimated divergence times will be useful for future evolutionary studies of basal angiosperm lineages.

关键词： Aquatic plants Nymphaea Phylogenetic analysis Plastid genomics Structural variation

Cretaceous crown male ant reveals the rise of modern lineages

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Zoological Research 2024年第5期45卷 983-989页

作者： Qiong Wu Alexander G.Radchenko Michael S.engel Xiao-Qin Li Hong-Ru Yang Xing-Ru Li Chung-Kun Shih Dong Ren Tai-Ping Gao College of Life Sciences Capital Normal UniversityBeijing 100048China I.I.Schmalhausen Institute of Zoology NAS of UkraineKiev 01054Ukraine Division of Invertebrate Zoology American Museum of Natural HistoryNew York 10024-5192USA Facultad de Ciencias Biológicas Universidad Nacional Mayor de San MarcosLima 11-0058Perú Departamento de Entomología Museo de Historia NaturalUniversidad Nacional Mayor de San MarcosLima 15072Perú Department of Chemistry Analytical and Testing CenterCapital Normal UniversityBeijing 100048China Department of Paleobiology National Museum of Natural HistorySmithsonian InstitutionWashington DC 20013-7012USA

Most described Mesozoic ants belong to stem groups that existed only during the Cretaceous ***,the earliest known crown ants were dated to the Turonian(Late Cretaceous,ca.94-90 million years ago(Ma))deposits found in the USA,Kazakhstan,and ***,the recent discovery of an alate male ant in Kachin amber from the earliest Cenomanian(ca.99 Ma),representing a new genus and species,Antiquiformica alata,revises the narrative on ant *** can be distinctly differentiated from all known male stem ants by its geniculate antennae with elongated scape,extending far beyond the occipital margin of the head and half the length of the funiculus,as well as its partly reduced forewing ***,the combination of a one-segmented waist with a well-developed node,elongated scape extending beyond the occipital margin,and reduced forewing venation,particularly the completely reduced m-cu and rs-m crossveins and absence of rm and mcu closed cells,firmly places the fossil within the extant subfamily *** transform infrared spectroscopy(FTIR)confirmed that the amber containing Antiquiformica alata originated from the Kachin mines in *** discovery significantly revises our understanding of the early evolution of *** presence of Antiquiformica in Cenomanian amber indicates that the subfamily Formicinae emerged at least by the start of the Late Cretaceous,with crown ants likely originating earlier during the earliest Cretaceous or possibly the Late Jurassic,although paleontological evidence is lacking to support the latter hypothesis.

关键词： Formicidae Formicinae Morphology Taxonomy Antiquiformica alata Paleontology Kachin amber

Pre-emergence herbicides affect seedling emergence of tropical forest tree species

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Journal of Forestry Research 2017年第4期28卷 733-739页

作者： Diego Cerveira de Souza Vera Lex engel Forest Science Department Agronomic Sciences College-FCASao Paulo State University – UNESPP.O. Box 237BotucatuSP 18603-970Brazil

Testing techniques to reduce weed infestation is a crucial step in developing direct tree seeding systems. The use of pre-emergence herbicides may be an alternative to manual weeding techniques, but so far, information on how they affect the seeds of native tree species is scarce. We established a greenhouse experiment to evaluate the effects of four pre-emergence herbicides (atrazine, diuron, isoxaflutole and oxyfluorfen) on weed suppression and seedling emergence and early growth of seven tropical forest tree species (annona coriacea Mart., Citharexylum myrianthum Cham., Cordia ecalyculata Vell., Peltophorum dubium (Spreng.) Taub., Psidium guajava L., Pterogyne nitens Tul. and Schinus terebinthifolia Raddi). The experimental design was a randomized complete block design with five treatments and five replicates. The treatments consisted of a single dose of each pre-emergence herbicide and a control. Throughout the 60 days after sowing we evaluated weed cover and seedling emergence and early growth of tree species. Overall, our results suggest that all tested herbicides reduced weed cover; however, they also negatively affected tree species seedling emergence. Of the four herbicides tested, atrazine and diuron showed the greatest effects on tree seedling emergence, oxyfluorfen was least aggressive towards native species and isoxaflutole was most effective in weed control. Native tree species varied in their responses to herbicides, indicating that future experiments should increase the number of species tested as well as investigate how seed traits can affect the species responses to different herbicides.

关键词： Pre-emergence herbicides Weed control Direct seeding Seedling emergence Tropical seasonal forests

Ensemble-based uncertainty quantification for coordination and control of thermostatically controlled loads

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Journal of Control and Decision 2018年第2期5卷 148-168页

作者： Weixuan Li Jianming Lian Dave engel Hong Wang Pacific Northwest National Laboratory RichlandWAUSA

This work investigates an uncertainty quantification(UQ)framework that analyses the uncertainty involved in modelling control systems to improve control strategy *** framework involves solving four problems:identifying uncertain parameters,propagating uncertainty to the quantity of interest,data assimilation and making decisions under quantified uncertainties.A specific group of UQ approaches,known as the ensemble-based methods,are adopted to solve these *** UQ framework is applied to coordinating a group of thermostatically controlled loads,which relies on simulating a second-order equivalent thermal parameter model with some uncertain *** this uncertainty affects the prediction and the control of total power is *** study shows that uncertainty can be effectively reduced using the measurement of air ***,the control objective is achieved fairly accurately with a quantification of the uncertainty.

关键词： Uncertainty quantification ensemble-based method thermostatically controlled loads transactive control smart grid

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建筑学报 2024年第5期 80-83页

作者：尤根·恩格尔钟乔赵宝森托马斯·布瑟王宏亮无不详 RAWVISION studio 德国KSP尤根恩格尔建筑师国际有限公司筑博设计股份有限公司

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Mesozoic giant fleas from northeastern China (Siphonaptera):Taxonomy and implications for palaeodiversity

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Chinese Science Bulletin 2013年第14期58卷 1682-1690页

作者： HUANG DiYing engel Michael S CAI ChenYang NEL André State Key Laboratory of Palaeobiology and Stratigraphy Nanjing Institute of Geology and Palaeontology Chinese Academy of Sciences Division of Entomology Natural History Museum and Department of Ecology & Evolutionary Biology University of Kansas CNRS UMR 7205 CP 50 Entomologie Muséum National d'Histoire Naturelle

The recently discovered definite giant fleas from the Middle Jurassic Daohugou fauna and the Early Cretaceous Jehol fauna of northeastern China represent significant evidence for understanding ectoparasitism in the Mesozoic as well as the evolution of these giant blood feeders with their putative hosts (i.e. hairy or feathered vertebrates). On the basis of seven well-preserved specimens from Daohugou and Huangbanjigou we analyse the systematic classification of these primitive fleas, establishing two new genera and three new species as Pseudopulex wangi sp. nov., Hadropsylla sinica gen. et sp. nov., and Tyrannopsylla beipiaoensis gen. et sp. nov. All of them are assigned to the extinct siphonapteran family Pseudopulicidae, while the Early Cretaceous genus Tarwinia is transferred to Tarwiniidae fam. nov. The basal morphological disparities of Siphonaptera in the Mesozoic are evidenced by the occurrence of at least three distinct groups (pseudopulicids, tarwiniids, and saurophthirids). These disparate morphologies likely indicate adaptations to different hosts.

关键词：中国东北地区中生代跳蚤巨型分类东北部早白垩世形态差异

Charcoal kiln sites, associated landscape attributes and historic forest conditions:DTM-based investigations in Hesse(Germany)

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Forest Ecosystems 2016年第3期3卷 174-189页

作者： Marcus Schmidt Andreas M?lder Egbert Sch?nfelder Falko engel Werner Fortmann-Valtink Northwest German Forest Research Institute Department A (Forest Growth) Kellerwald-Edersee National Park

Background： An examination of the distribution of ancient charcoal kiln sites in the forest landscape seems to be worthwhile, since general trends in the selection of suitable kiln site locations in the past might become obvious. In this way forest landscape elements with a more intense usage by charcoal burning can be identified. By doing this, we can expect to gain information on the former condition and tree species composition of woodland. Investigations on the spatial distribution of charcoal kiln sites in relation to landscape attributes are sparse, however, probably due to the high on-site mapping effort. The outstanding suitability of LiDAR-derived digital terrain models （DTMs） for the detection of charcoal kiln sites has been recently proved. Hence, DTM-based surveys of charcoal kiln sites represent a promising attempt to fill this research gap. Methods： Based on DTM-based surveys, we analyzed the spatial distribution of charcoal kiln sites in two forest landscapes in the German federal state of Hesse： Reinhardswald and Kellerwald-Edersee National Park. In doing so, we considered the landscape attibutes ＂tree species composition＂, ＂water supply status＂, ＂nutrient supply status＂, ＂soil complex classes＂, ＂altitude＂, ＂exposition＂, and ＂inclination＂. Results： We found that charcoal kiln sites were established preferably on hillside locations that provided optimal growing and regeneration conditions for European beech （Fagus sylvatico） due to their acidic brown soils and sufficient water supply. These results are in line with instructions for the selection of appropriate kiln site locations, found in literature from the 18th to the 19th century. Conclusions： We conclude that there were well-stocked, beech-dominated deciduous forest stands in northern Hesse before 1800, particularly at poorly accessible hillside locations. These large stocks of beech wood were utilized by the governments of the different Hessian territories through the establishment of ironworks

关键词： Airborne laser scanning Charcoal production Cultural remains Digital terrain model Fagus sylvatica Forest history Historical ecology Landscape history Industrial history Metallurgy

Calibration,validation,and evaluation of the Water Erosion Prediction Project(WEPP)model for hillslopes with natural runoff plot data

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International Soil and Water Conservation Research 2023年第4期11卷 669-687页

作者： Shuyuan Wang Ryan P.McGehee Tian Guo Dennis C.Flanagan Bernard A.engel Department of Agricultural&Biological Engineering Purdue UniversityWest LafayetteIN47907USA USDA-Agricultural Research Service National Soil Erosion Research LaboratoryWest LafayetteIN47907USA

The Water Erosion Prediction Project(WEPP)model has been widely used for estimating runoff and soil *** evaluation of the latest version(version 2021.133)under a range of environmental conditions can provide confidence to its *** objectives of this study were to evaluate the WEPP model for runoff and soil loss predictions using 1159 plot years of rainfall-runoff events data from field experi-mental plots with various climates,soils,topographies,and *** runoff and soil loss predictions were compared to the observations before and after input parameter *** results showed good predictions of runoff and soil loss were obtained with both the uncalibrated and calibrated WEPP model for all considered scales with Nash-Sutcliffe model efficiencies(NSE)over *** calibration of input baseline effective hydraulic conductivity(k_(e)),baseline critical shear stress(τ_(c)),baseline rill erod-ibility(k_(r)),and baseline interrill erodibility(k_(i))improved WEPP model performance with NSE values of 0.98 and 0.91 for average annual runoff and soil loss predictions,*** WEPP model tended to underestimate the runoff and soil loss for large events with runoff over 100 mm and soil loss over 120t/*** event runoff and soil loss predictions(NSE ≥0.4)were obtained for the most common cropping/management systems considered,including corn,cotton,tilled fallow,and wheat after *** study illustrates the most recent WEPP model's performance for runoff and soil loss predictions,and provides a comprehensive set of results.

关键词： WEPP Runoff Soil loss Calibration Validation

Conditional coherent risk measures and regime-switching conic pricing

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Probability, Uncertainty and Quantitative Risk 2021年第4期6卷 267-300页

作者： engel John C Dela Vega Robert J Elliott UniSA Business University of South AustraliaSA 5000 AdelaideAustralia Haskayne School of Business University of CalgaryCalgaryAlbertaT2N 1N4Canada

This paper introduces and represents conditional coherent risk measures as essential suprema of conditional expectations over a convex set of probability measures and as distorted expectations given a concave distortion function.A model is then developed for the bid and ask prices of a European-type asset by a conic *** price process is governed by a modified geometric Brownian motion whose drift and diffusion coefficients depend on a Markov *** bid and ask prices of a European-type asset are then characterized using conic quantization.

关键词： Conditional coherent risk measures Markov chains Regime-switching Conic finance European options Distortion functions Conic quantization