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Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts

Horticulture Research 2023年第11期10卷 96-105页

作者： alan E.Yocca Adrian Platts Elizabeth Alger Scott Teresi Molla F.Mengist Juliana Benevenuto Luis Felipe V.Ferrão MacKenzie Jacobs Michal Babinski Maria Magallanes-Lundback Philipp Bayer Agnieszka Golicz Jodi L.Humann Dorrie Main Richard V.Espley david Chagné Nick W.Albert Sara Montanari Nicholi Vorsa James Polashock Luis Díaz-Garcia Juan Zalapa Nahla V.Bassil Patricio R.Munoz Massimo Iorizzo Patrick P.Edger Department of Horticulture Michigan State UniversityEast LansingMI48824United States Department of Plant Biology Michigan State UniversityEast LansingMI48824United States Genetics and Genome Sciences Michigan State UniversityEast LansingMI48824United States Plants for Human Health Institute North Carolina State UniversityKannapolisNC United States Horticultural Sciences Department University of FloridaGainesvilleFL 32611United States Department of Biochemistry and Molecular Biology Michigan State UniversityEast LansingMI48824United States University of Western Australia Perth 6009 Australia Justus Liebig University Giessen35390 Germany Department of Horticulture Washington State UniversityPullmanWA99163United States The New Zealand Institute for Plant and Food Research Limited(PFR) AucklandNew Zealand The New Zealand Institute for Plant and Food Research Limited(PFR) PalmerstonNew Zealand The New Zealand Institute for Plant and Food Research Limited(PFR) MotuekaNew Zealand SEBS Plant BiologyRutgers UniversityNew Brunswick NJ 01019 United States Department of Viticulture and Enology University of CaliforniaDavisDavisCA 95616United States National Clonal Germplasm Repository USDA-ARSCorvallisOR 97333United States Department of Horticulture North Carolina State UniversityKannapolisNC United States MSU AgBioResearch Michigan State UniversityEast LansingMI48824United States

Domestication of cranberry and blueberry began in the United States in the early 1800s and 1900s,respectively,and in part owing to their f lavors and health-promoting benefits are now cultivated and consumed *** industry continues to face a wide variety of production challenges(*** pressures),as well as a demand for higher-yielding cultivars with improved fruit quality ***,molecular tools to help guide breeding efforts for these species have been relatively limited compared with those for other high-value ***,we describe the construction and analysis of the first pangenome for both blueberry and *** analysis of these pangenomes revealed both crops exhibit great genetic diversity,including the presence-absence variation of 48.4%genes in highbush blueberry and 47.0%genes in *** genes,those not shared by all cultivars,are significantly enriched with molecular functions associated with disease resistance and the biosynthesis of specialized metabolites,including compounds previously associated with improving fruit quality *** discovery of thousands of genes,not present in the previous reference genomes for blueberry and cranberry,will serve as the basis of future research and as potential targets for future breeding *** pangenome,as a multiple-sequence alignment,as well as individual annotated genomes,are publicly available for analysis on the Genome Database for Vaccinium-a curated and integrated web-based relational ***,the core-gene predictions from the pangenomes will serve useful to develop a community genotyping platform to guide future molecular breeding efforts across the family.

关键词： breeding cultivar crops

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首次利用机器人研究智利阿塔卡马沙漠上的生命的实验

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控制工程（北京） 2006年第1期 47-54页

作者： david Wettergreen 李洋（译）潘科炎（校）

智刺北部的阿塔卡马沙漠可能是地球上生命最稀少的地区，但是，目前已探明，在阿塔卡马沙漠与太平洋海岸山脉的交会区存在耐干旱的微生物。但对阿塔卡马亚区的生物多样性梯度及其生长环境仍未探明。这两方面是“阿塔卡马沙漠生命”这一... 详细信息

智刺北部的阿塔卡马沙漠可能是地球上生命最稀少的地区，但是，目前已探明，在阿塔卡马沙漠与太平洋海岸山脉的交会区存在耐干旱的微生物。但对阿塔卡马亚区的生物多样性梯度及其生长环境仍未探明。这两方面是“阿塔卡马沙漠生命”这一科研项目的重点。为了开展这项研究，必须携带相关仪器设备穿越长长的阿塔卡马沙漠，进行地质和生物测量。在本文中，我们从天体生物学和机器人学角度探索“阿塔卡马沙漠上的生命”这一课题。我们需着重解决目前面临的一些研究难题，以便在该沙漠上实现持续导航，探明其资源，从而实现在沙漠上长期生存。我们利用移动机器人“土卫七”，在智利开展了首次科学研究和技术试验，介绍了这些实验，最后发表了我们的分析结果。这些分析结果使我们能深入了解一位著名机器人天体生物学家的设计和我们在下一个野外实验阶段进行科学研究所使用的方法。

关键词：机器人学野外实验沙漠生命智利塔天体生物学科学研究所分析结果生物多样性

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细胞内免疫

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世界科学 1990年第3期 20-21页

作者： david Baltimore ,许仁林

Ⅰ.黑尔斯考兹(Ira Herskowitz)在去年出版的《自然》杂志上发表的一篇文章中指出。研究克隆基因功能的最好途径是刨制那些能够提供一种显性负表型的突变体,当能表达这种突变基因的质粒在细胞内稳定下来时,它的产物就能显性地干扰宿主... 详细信息

Ⅰ.黑尔斯考兹(Ira Herskowitz)在去年出版的《自然》杂志上发表的一篇文章中指出。研究克隆基因功能的最好途径是刨制那些能够提供一种显性负表型的突变体,当能表达这种突变基因的质粒在细胞内稳定下来时,它的产物就能显性地干扰宿主基因产物所表现的功能。这将有助于阐明野生型等位基因的功能。在本期《自然》杂志上,A·弗里德曼等(alan Friedman)的工作通过向细胞内移植一个编码疱疹病毒蛋白

关键词：逆转录病毒蛋白质编码弗里德细胞内细胞内免疫艾滋病获得性免疫缺陷综合征性病

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淡水沉积物中的生物多样性和生态系统过程

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人类环境杂志 1997年第8期26卷 563-569页

作者： Margaret A.Palmer alan P.Covich Bland J.Finlay Janine Gibert Kevin D.Hyde Richard K.Johnson Timo Kairesalo Sam Lake Charles R.Lovell Robert J.Naiman Claudia Ricci Francese Sabater david Strayer 习晓环马里兰大学自科罗拉多州立大学淡水生态研究所微生物室里昂大学香港大学真菌学瑞典农业科学大学赫尔辛基大学 Monash大学南卡罗来纳大学华盛顿大学渔业学校国立米兰大学巴塞罗那大学生态系统研究所

所有的淡水在穿过或经过沉积物生境后最终流入海洋或进入大气圈。在这些淡水沉积物带中含有大量制造和加工有机碳化合物的生物种。有的物种担负着特定的功能,如氮的固定和循环,其它物种则分解污染物或将沉积物混匀以改变生态系统过程的... 详细信息

所有的淡水在穿过或经过沉积物生境后最终流入海洋或进入大气圈。在这些淡水沉积物带中含有大量制造和加工有机碳化合物的生物种。有的物种担负着特定的功能,如氮的固定和循环,其它物种则分解污染物或将沉积物混匀以改变生态系统过程的速率。现在已描述了大约175000个物种,但新的物种仍不断被发现。它们的多样性及分布随深度梯度、溶解氧、所在纬度和湿地、湖泊、河流及地下水高度的不同而不同。独特的特有种,特别是那些分散能力有限的物种,多分布在深度大且隔离的生境。应该在全球范围培养合格的科学家,以促进物种丰富的生物群和生态系统基本关系方面的研究。

关键词：淡水沉积物生物多样性生态系统过程

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墙上的别样风景

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现代装饰（家居） 2016年第3期 68-75页

作者： alan Wisniewski àlvaro Goula&Pablo Figuera Anette Stabel david Quan Erika Kovesdi Edward Lee Filippo Mambretti Jordan Murphy Joel Yatscoff Moe Takemura Michelle Ivankovic Michelle Ivankovic&Laura Carwardine rebobdesign Sung Wook Park Wesley Chau 伏平范嘉苑

墙是一种象征,在远离文明的荒滩野漠,它会滋生家的联想;墙是一段历史,在纵横古今的变迁时代,它承载着一个王朝的盛哀;墙是一个屏障,在进退攻守的人际交往中,它是守护心灵的桥头堡;墙是一道风景,在四季轮回的辗转交织间,它呈现着大自然... 详细信息

墙是一种象征,在远离文明的荒滩野漠,它会滋生家的联想;墙是一段历史,在纵横古今的变迁时代,它承载着一个王朝的盛哀;墙是一个屏障,在进退攻守的人际交往中,它是守护心灵的桥头堡;墙是一道风景,在四季轮回的辗转交织间,它呈现着大自然的万般风情。如今,随着现代人对家居环境的要求日益提高,如何将家装扮得既有个性又富有内涵和独特的品味。

关键词：风景墙人际交往家居环境桥头堡大自然现代人承载

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Naming and outline of Dothideomycetes-2014 including proposals for the protection or suppression of generic names

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Fungal Diversity 2014年第6期69卷 1-55页

作者： Nalin N.Wijayawardene Pedro W.Crous Paul M.Kirk david L.Hawksworth Saranyaphat Boonmee Uwe Braun Dong-Qin Dai Melvina J.D’souza Paul Diederich Asha Dissanayake Mingkhuan Doilom Singang Hongsanan E.B.Gareth Jones Johannes Z.Groenewald Ruvishika Jayawardena James D.Lawrey Jian-Kui Liu Robert Lücking Hugo Madrid Dimuthu S.Manamgoda Lucia Muggia Matthew P.Nelsen Rungtiwa Phookamsak Satinee Suetrong Kazuaki Tanaka Kasun M.Thambugala Dhanushka N.Wanasinghe Saowanee Wikee Ying Zhang Andre Aptroot H.A.Ariyawansa Ali H.Bahkali D.Jayarama Bhat Cécile Gueidan Putarak Chomnunti G.Sybren De Hoog Kerry Knudsen Wen-Jing Li Eric H.C.McKenzie Andrew N.Miller alan J.L.Phillips Marcin Piatek Huzefa A.Raja Roger S.Shivas Bernad Slippers Joanne E.Taylor Qing Tian Yong Wang Joyce H.C.Woudenberg Lei Cai Walter M.Jaklitsch Kevin D.Hyde Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China World Agroforestry Centre East and Central AsiaKunming 650201YunnanPeople’s Republic of China Institute of Excellence in Fungal Research Chiang Rai 57100Thailand Forestry and Agricultural Biotechnology Institute(FABI) University of PretoriaPretoria 0002South Africa CBS-KNAW Fungal Biodiversity Centre Uppsalalaan 83584 CT UtrechtThe Netherlands State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing100101People_s Republicof China Mycology Section Royal Botanic GardensKewRichmondSurrey TW93DSUK Department of Life Sciences The Natural History MuseumCromwell RoadLondon SW75BDUK Departamento de Biología VegetalⅡ Facultad de FarmaciaUniversidad Complutense de MadridPlaza Ramón y CajalMadrid 28040Spain School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Institut Für Biologie Martin-Luther-UniversitatBereich Geobotanik Und Botanischer GartenHerbariumNeuwerk 2106099 Halle(Saale)Germany Musée National d'histoire Naturelle 25 Rue MunsterL-2160 LuxembourgLuxembourg Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesBeijing 100097People’s Republic of China Department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box 2455Riyadh 11451Kingdom of Saudi Arabia Department of Environmental Science and Policy George Mason University4400 University DriveFairfaxVA 22030-4444USA Science and Education Integrative Research(Botany)The Field Museum1400 South Lake Shore DriveChicagoIL 60605-2496USA Institute of Plant Sciences University of GrazHolteigasse 68010GrazAustria Department of Life Science University of TriesteVia L.Giorgieri 10TriesteItaly Committee on Evolutionary Biology University of Chicago1025 E.57th StreetChicagoIL 60637USA Fungal Biodiversity Laboratory(BFBD) National Center for Gen

Article 59.1,of the International Code of Nomenclature for Algae,Fungi,and Plants(ICN;Melbourne Code),which addresses the nomenclature of pleomorphic fungi,became effective from 30 July *** that date,each fungal species can have one nomenclaturally correct name in a particular *** other previously used names for this species will be considered as *** older generic epithet takes priority over the younger *** widely used younger names proposed for use,must comply with Art.57.2 and their usage should be approved by the Nomenclature Committee for Fungi(NCF).In this paper,we list all genera currently accepted by us in Dothideomycetes(belonging to 23 orders and 110 families),including pleomorphic and nonpleomorphic *** the case of pleomorphic genera,we follow the rulings of the current ICN and propose single generic names for future *** taxonomic placements of 1261 genera are listed as an *** names and suppressed names for 34 pleomorphic genera are listed *** and justifications are provided for possible proposed names after the list of *** are also provided on recent advances in our understanding of asexual and sexual morph linkages in Dothideomycetes.A phylogenetic tree based on four gene analyses supported 23 orders and 75 families,while 35 families still lack molecular data.

关键词： Article 59.1 Ascomycota One name Phylogeny Pleomorphism

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alan Baker 1939-2018

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数学译林 2020年第2期39卷 157-161页

作者： david Masser 赵振江(译) 张崇(校) 瑞士Basel大学不详

Fields(菲尔兹)奖获得者alan Baker(贝克)2018年2月4日在英国剑桥逝世,几天之前他突发了严重的中风.他在超越性理论上获得了一项更大突破,并用它得到了新的和重要的一大类超越数(开辟了后来发现另外几个这样类的途径);发展了定量描述(qu... 详细信息

Fields(菲尔兹)奖获得者alan Baker(贝克)2018年2月4日在英国剑桥逝世,几天之前他突发了严重的中风.他在超越性理论上获得了一项更大突破,并用它得到了新的和重要的一大类超越数(开辟了后来发现另外几个这样类的途径);发展了定量描述(quantitative version),并把它们用于许多经典的Diophantus(丢番图)方程的有效解以及关于虚二次数域类数的著名的Gauss(高斯)猜想的解决;并启动了扩展到椭圆曲线的研究(开辟了后来对Able(阿贝尔)簇和交换群簇的推广,随之而来的是它们对Diophantus几何学中旧的和新的问题的应用).

关键词：阿贝尔丢番图超越数椭圆曲线有效解几何学二次数域

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Families of Dothideomycetes

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Fungal Diversity 2013年第6期63卷 1-313页

作者： Kevin D.Hyde E.B.Gareth Jones Jian-Kui Liu Hiran Ariyawansa Eric Boehm Saranyaphat Boonmee Uwe Braun Putarak Chomnunti Pedro W.Crous Dong-Qin Dai Paul Diederich Asha Dissanayake Mingkhuan Doilom Francesco Doveri Singang Hongsanan Ruvishika Jayawardena James D.Lawrey Yan-Mei Li Yong-Xiang Liu Robert Lücking Jutamart Monkai Lucia Muggia Matthew P.Nelsen Ka-Lai Pang Rungtiwa Phookamsak Indunil C.Senanayake Carol A.Shearer Satinee Suetrong Kazuaki Tanaka Kasun M.Thambugala Nalin N.Wijayawardene Saowanee Wikee Hai-Xia Wu Ying Zhang Begoña Aguirre-Hudson S.Aisyah Alias AndréAptroot Ali H.Bahkali Jose L.Bezerra D.Jayarama Bhat Erio Camporesi Ekachai Chukeatirote Cécile Gueidan david L.Hawksworth Kazuyuki Hirayama Sybren De Hoog Ji-Chuan Kang Kerry Knudsen Wen-Jing Li Xing-Hong Li Zou-Yi Liu Ausana Mapook Eric H.C.McKenzie Andrew N.Miller Peter E.Mortimer alan J.L.Phillips Huzefa A.Raja Christian Scheuer Felix Schumm Joanne E.Taylor Qing Tian Saowaluck Tibpromma Dhanushka N.Wanasinghe Yong Wang Jian-Chu Xu Supalak Yacharoen Ji-Ye Yan Min Zhang Key Laboratory for Plant Biodiversity and Biogeography of East Asia(KLPB) Kunming Institute of BotanyChinese Academy of ScienceKunming 650201Yunnan China World Agroforestry Centre East Asia NodeHeilongtanKunming 650201China Institute of Excellence in Fungal Research Chiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Institute Ocean Earth Sciences Kuala Lumpur 50603SelangorMalaysia Department of Botany and Microbiology King Saudi UniversityRiyadhSaudi Arabia 42 Longacre Drive LivingstonNJ 07039USA Institut für Biologie Bereich Geobotanik und Botanischer GartenHerbariumMartin-Luther-UniversitätNeuwerk 2106099 Halle(Saale)Germany CBS-KNAW Fungal Biodiversity Centre Uppsalalaan 83584CT UtrechtThe Netherlands Musée National d’histoire Naturelle 25 rue Munster2160 LuxembourgLuxembourg Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesBeijing 100097People’s Republic of China Via dei Funaioli 22 57126 LivornoItaly Department of Environmental Science and Policy George Mason University4400 University DriveFairfaxVA 22030-4444USA International Fungal Research and Development Centre Key Laboratory of Resource Insect Cultivation&Utilization State Forestry AdministrationKunming 650224People’s Republic of China The Research Institute of Resource Insects Chinese Academy of ForestryKunming 650224People’s Republic of China Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyangGuizhou 550006People’s Republic of China Science and Education Integrative Research(Botany)The Field Museum1400 South Lake Shore DriveChicagoIL 60605-2496USA Institute of Plant Sciences University of GrazHolteigasse 68010 GrazAustria Department of Life Science University of TriesteVia L.Giorgieri 10TriesteItaly Committee on Evolutionary Biology University of Chicago1025 E.57th StreetChicagoIL 60637USA Institute ofMarine Biology and Center of Excellence for the Oceans Taiwan

Dothideomycetes comprise a highly diverse range of fungi characterized mainly by asci with two wall layers(bitunicate asci)and often with fissitunicate *** species are saprobes,with many asexual states comprising important plant *** are also endophytes,epiphytes,fungicolous,lichenized,or lichenicolous *** occur in terrestrial,freshwater and marine habitats in almost every part of the *** accept 105 families in Dothideomycetes with the new families Anteagloniaceae,Bambusicolaceae,Biatriosporaceae,Lichenoconiaceae,Muyocopronaceae,Paranectriellaceae,Roussoellaceae,Salsugineaceae,Seynesiopeltidaceae and Thyridariaceae introduced in this *** family is provided with a description and notes,including asexual and asexual states,and if more than one genus is included,the type genus is also *** family is provided with at least one figure-plate,usually illustrating the type genus,a list of accepted genera,including asexual genera,and a key to these genera.A phylogenetic tree based on four gene combined analysis add support for 64 of the families and 22 orders,including the novel orders,Dyfrolomycetales,Lichenoconiales,Lichenotheliales,Monoblastiales,Natipusillales,Phaeotrichales and *** paper is expected to provide a working document on Dothideomycetes which can be modified as new data comes to *** is hoped that by illustrating types we provide stimulation and interest so that more work is carried out in this remarkable group of fungi.