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Targeting miRNA by CRISPR/Cas in cancer:advantages and challenges

Military Medical Research 2024年第3期11卷 345-373页

作者： Bashdar Mahmud Hussen Mohammed Fatih Rasul Snur Rasool Abdullah Hazha Jamal Hidayat Goran Sedeeq Hama Faraj Fattma Abodi Ali abbas salihi Aria Baniahmad Soudeh Ghafouri-Fard Milladur Rahman Mark C.Glassy Wojciech Branicki Mohammad Taheri Department of Biomedical Sciences Cihan University-ErbilErbilKurdistan Region 44001Iraq Department of Clinical Analysis College of PharmacyHawler Medical UniversityErbilKurdistan Region 44001Iraq Department of Pharmaceutical Basic Science Faculty of PharmacyTishk International UniversityErbilKurdistan Region 44001Iraq Medical Laboratory Science Lebanese French UniversityErbilKurdistan Region 44001Iraq Department of Biology College of EducationSalahaddin University-ErbilErbilKurdistan Region 44001Iraq Department of Medical Laboratory Science Komar University of Science and TechnologySulaymaniyah 46001Iraq Department of Medical Microbiology College of Health SciencesHawler Medical UniversityErbilKurdistan Region 44001Iraq Department of Biology College of ScienceSalahaddin University-ErbilErbilKurdistan Region 44001Iraq Center of Research and Strategic Studies Lebanese French UniversityErbil 44001Iraq Institute of Human Genetics Jena University Hospital07747 JenaGermany Department of Medical Genetics School of MedicineShahid Beheshti University of Medical SciencesTehran 374-37515Iran Department of Clinical Sciences MalmöSection for SurgeryLund University22100 MalmöSweden Translational Neuro-Oncology Laboratory San Diego(UCSD)Moores Cancer CenterUniversity of CaliforniaSan DiegoCA 94720USA Faculty of Biology Institute of Zoology and Biomedical ResearchJagiellonian University31-007 KrakówPoland Urology and Nephrology Research Center Shahid Beheshti University of Medical SciencesTehran 374-37515Iran

Clustered regulatory interspaced short palindromic repeats(CRISPR)has changed biomedical research and provided entirely new models to analyze every aspect of biomedical sciences during the last *** the study of cancer,the CRISPR/CRISPR-associated protein(Cas)system opens new avenues into issues that were once unknown in our knowledge of the non-coding genome,tumor heterogeneity,and precision ***/Cas-based geneediting technology now allows for the precise and permanent targeting of mutations and provides an opportunity to target small non-coding RNAs such as microRNAs(miRNAs).However,the development of effective and safe cancer gene editing therapy is highly dependent on proper design to be innocuous to normal cells and prevent introducing other *** study aims to highlight the cutting-edge approaches in cancer-gene editing therapy based on the CRISPR/Cas technology to target miRNAs in cancer ***,we highlight the potential challenges in CRISPR/Cas-mediated miRNA gene editing and offer advanced strategies to overcome them.

关键词： CRISPR CRISPR/Cas9 CRISPR/Cas12 Gene editing miRNAs Cancer therapy

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Heat transfer analysis in particle-laden flows using the immersed boundary method

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Particuology 2024年第7期90卷 394-403页

作者： Ali abbas Zaidi Department of Mechanical Engineering University of Manitoba75A Chancellors CircleWinnipegR3T 5V6Canada

This paper investigates an efficient immersed boundary method(IBM)for multiple-core CPU machines with local grid refinement for the calculation of heat transfer between fluids and finite-sized *** fluid momentum equations are solved by using the fractional step method,while the energy equation is solved by employing the second-order Adams-Bashforth *** efficient load balancing between the CPU cores,the coupling between particles and fluid is obtained by applying the body force in the fluid equations,which depends on the solid volume fraction of particles contained in each grid cell,and then by linearly interpolating the particle temperature and velocity on the fluid grid cell(in place of the delta function commonly used in literature).Several test cases from the literature are studied,and good agreement is observed between the simulation results and the ***,a scaling study on multiple core machines is performed,demonstrating the proposed IBM's capabilities for a significant reduction in processing time.

关键词： Heat transfer Immersed boundary method Particle resolved direct numerical simulations Fluid solid interactions

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Seismic performance evaluation of hybrid coupled shear wall system with shear and flexural fuse-type steel coupling beams

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Earthquake Engineering and Engineering Vibration 2024年第3期23卷 691-712页

作者： Zahra Ramezandoust abbas Tajaddini Panam Zarfam Department of Civil Engineering Science and Research branchIslamic Azad UniversityTehran 14778-93855Iran Department of Civil Engineering Karaj BranchIslamic Azad UniversityKaraj 31485-313Iran

Replaceable flexural and shear fuse-type coupling beams are used in hybrid coupled shear wall(HCSW)systems,enabling concrete buildings to be promptly recovered after severe *** study aimed to analytically evaluate the seismic behavior of flexural and shear fuse beams situated in short-,medium-and high-rise RC buildings that have *** building groups hypothetically located in a high seismic hazard zone were studied.A series of 2D nonlinear time history analyses was accomplished in OpenSees,using the ground motion records scaled at the design basis earthquake *** was found that the effectiveness of fuses in HCSWs depends on various factors such as size and scale of the building,allowable rotation value,inter-story drift ratio,residual drift quantity,energy dissipation value of the fuses,*** results show that shear fuses better meet the requirements of rotations and *** contrast,flexural fuses dissipate more energy,but their sectional stiffness should increase to meet other *** was concluded that adoption of proper fuses depends on the overall scale of the building and on how associated factors are considered.

关键词： hybrid coupled shear wall steel fuse coupling beam shear and flexural fuse nonlinear dynamic analysis seismic performance

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Feedback Mechanism-driven Mutation Reptile Search Algorithm for Optimizing Interpolation Developable Surfaces

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Journal of Bionic Engineering 2024年第1期21卷 527-571页

作者： Gang Hu Jiao Wang Xiaoni Zhu Muhammad abbas Department of Applied Mathematics Xi'an University of TechnologyXi'an 710054China School of Mechanical and Precision Instrument Engineering Xi'an University of TechnologyXi'an 710048China Department of Mathematics University of SargodhaSargodha 40100Pakistan

Curvature lines are special and important curves on *** is of great significance to construct developable surface interpolated on curvature lines in engineering *** this paper,the shape optimization of generalized cubic ball developable surface interpolated on the curvature line is studied by using the improved reptile search ***,based on the curvature line of generalized cubic ball curve with shape adjustable,this paper gives the construction method of SGC-Ball developable surface interpolated on the ***,the feedback mechanism,adaptive parameters and mutation strategy are introduced into the reptile search algorithm,and the Feedback mechanism-driven improved reptile search algorithm effectively improves the solving *** IEEE congress on evolutionary computation 2014,2017,2019 and four engineering design problems,the feedback mechanism-driven improved reptile search algorithm is compared with other representative methods,and the result indicates that the solution performance of the feedback mechanism-driven improved reptile search algorithm is *** last,taking the minimum energy as the evaluation index,the shape optimization model of SGC-Ball interpolation developable surface is *** developable surface with the minimum energy is achieved with the help of the feedback mechanism-driven improved reptile search algorithm,and the comparison experiment verifies the superiority of the feedback mechanism-driven improved reptile search algorithm for the shape optimization problem.

关键词： Reptile search algorithm Feedback mechanism Adaptive parameter Mutation strategy SGC-Ball interpolation developable surface Shape optimization

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A Stochastic Model to Assess the Epidemiological Impact of Vaccine Booster Doses on COVID-19 and Viral Hepatitis B Co-Dynamics with Real Data

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Computer Modeling in Engineering & Sciences 2024年第3期138卷 2973-3012页

作者： Andrew Omame Mujahid abbas Dumitru Baleanu Department of Mathematics Federal University of TechnologyOwerri460114Nigeria Abdus Salam School of Mathematical Sciences Government College UniversityLahore54000Pakistan Department of Mathematics Government College UniversityLahore54000Pakistan Department of Computer Science and Mathematics Labanese American UniversityBeirutLebanon Institute of Space Sciences Magurele-BucharestRomania Department of Medical Research China Medical University HospitalChina Medical UniversityTaichung40402Taiwan

A patient co-infected with COVID-19 and viral hepatitis B can be atmore risk of severe complications than the one infected with a single *** study develops a comprehensive stochastic model to assess the epidemiological impact of vaccine booster doses on the co-dynamics of viral hepatitis B and *** model is fitted to real COVID-19 data from *** proposed model incorporates logistic growth and saturated incidence *** analyses using the tools of stochastic calculus,are performed to study appropriate conditions for the existence of unique global solutions,stationary distribution in the sense of ergodicity and disease *** stochastic threshold estimated from the data fitting is given by:R_(0)^(S)=*** assessments are implemented to illustrate the impact of double-dose vaccination and saturated incidence functions on the dynamics of both *** effects of stochastic white noise intensities are also highlighted.

关键词： Viral hepatitis B COVID-19 stochastic model extinction ergodicity real data

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Predicting density log from well log using machine learning techniques and heuristic optimization algorithm:A comparative study

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Petroleum Research 2024年第2期9卷 176-192页

作者： Mehdi Rahmati Ghasem Zargar abbas Ayatizadeh Tanha National Iranian Drilling Company Well Logging DepartmentAhwazIran Faculty Member of Petroleum University of Technology Iran Department of Petroleum Engineering Tarbiat Modares UniversityTehranIran

In the petroleum industry,the analysis of petrophysical parameters is critical for efficient reservoir management,production optimization,development strategies,and accurate hydrocarbon reserve *** recent years,the integration of machine learning methodologies has revolutionized the field,addressing challenges in geology,geophysics,and petroleum engineering,even when confronted with limited or imperfect *** study focuses on the prediction of density logs,a pivotal factor in evaluating reservoir hydrocarbon *** is important to note that during well logging operations,log data for specific depths of interest may be missing or incorrect,presenting a significant *** tackle this issue,we employed the Adaptive Neuro-Fuzzy Inference System(ANFIS)and Artificial Neural Networks(ANN)in combination with advanced optimization algorithms,including Particle Swarm Optimization(PSO),Imperialist Competitive Algorithms(ICA),and Genetic Algorithms(GA).These methods exhibit promising performance in predicting density logs from gamma-ray,neutron,sonic,and photoelectric log ***,our results highlight that the Genetic Algorithms-based Artificial Neural Network(GA-ANN)approach outperforms all other methods,achieving an impressive Mean Squared Error(MSE)of *** comparison,ANFIS records an MSE of 0.0015,ICA-ANN 0.0090,PSO-ANN 0.0093,and ANN 0.0183.

关键词： Density log Machine learning approaches Artificial neural networks(ANN) Adaptive neuro-fuzzy inference system(ANFIS) Optimization algorithm

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CRX-527 as a candidate adjuvant in a recombinant BCG-based malaria vaccine

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Asian Pacific Journal of Tropical Biomedicine 2024年第1期14卷 1-7页

作者： Nor Munirah Zakaria Muhammad Adamu abbas Rapeah Suppian School of Health Sciences Universiti Sains MalaysiaHealth Campus16150 Kubang KerianKota BharuKelantanMalaysia Department of Medical Microbiology and Parasitology College of Health SciencesBayero University KanoP.M.B.3011BUKKano Nigeria

Objective:To investigate the role of CRX-527,a Toll-like receptor 4 agonist,as the possible adjuvant for recombinant Mycobacterium bovis Bacillus Calmette-Guerin expressing merozoite surface protein 1C(BCG-MSP-1C).Methods:The mice were immunized with BCG and BCG-MSP-1C in the presence and absence of *** untreated mice(injected with PBS-T80 only)were the negative *** ability of CRX-527 to enhance IgG and its subclasses,as well as IL-4 and IFN-γproduction in the serum and spleen supernatant was evaluated using ***:Mice immunized with BCG-MSP-1C exhibited the highest production of IgGs,IL-4 and IFN-γafter third *** addition,CRX-527 further promoted the production of total IgG and IgG subclasses as well as IFN-γand IL-4 in the serum and splenocytes of immunized ***:CRX-527 has the potential as an adjuvant candidate for the candidate *** study is needed to verify appropriate dosage for immunization and its efficacy.

关键词： CRX-527 BCG BCG-MSP-1C TLR-4 agonists Cytokine IgG Malaria

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Facile synthesis of samarium and cerium doped double perovskite cobaltite with enhanced dielectric response

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Journal of Rare Earths 2024年第7期42卷 1317-1327,I0005页

作者： Yasir abbas M.Kamran M.Anis-ur-Rehman Applied Thermal Physics Laboratory Department of PhysicsCOMSATS University IslamabadIslamabad 45550Pakistan

The investigation of Sm-Ce doping on structure,conduction,and dielectric response of Bi_(2)Ca_(2-2x)Sm_(x)CexCoO_(6)(x=0.000,0.025,0.050,0.075)(BCSCCO)are *** the specimens were synthesized by a facile synthesis technique named the co-precipitation route.X-ray diffraction(XRD)reveals that BCSCCO crystallizes into one phase with space group P21/*** crystallite size,dislocation density,lattice parameters,lattice strain,unit cell volume,and bulk density were determined using XRD *** structural properties of Bi_(2)Ca_(2)CoO_(6)were examined using calculations based on the density functional *** and experimental values discrepancy is less than 1%.A scanning electron microscope was used for performing a microstructural *** SEM images demonstrate the homogeneous distribution of grains with a range of sizes(0.054-0.090μm).The alternating current(ac)conductivity,dielectric permittivity,and tangent loss were also studied as a function of frequency(20 Hz-3 MHz)at different temperatures(100-500℃).All synthesized samples were examined using non-linear Debye's function to determine their spreading factor and relaxation *** specimen with the lowest crystallite size(∼23 nm)exhibits a high dielectric permittivity(∼3.80×10^(6)).The conduction mechanism was examined in the studied samples with the use of Jonscher's power *** power law indicates that the BCSCCO(x=0.000,0.025)follows correlated barrier hopping,whereas the x=0.050 and 0.075 compositions follow non-overlapping polaron *** studied specimen Bi_(2)Ca_(1.9)0Sm_(0.05)0Ce_(0.05)_(0)CoO_(6)with the highest density(∼5.65 g/cm^(3))displays a high electrical conductivity(∼46.1 S/cm).These findings correspond to those published for ceramics made from calcium cobaltite using solid-state reactions(5.0-26.0 S/cm).

关键词： Bismuth calcium samarium cerium cobaltite (BCSCCO) Spreading factor Conduction mechanism Rare earths

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DeBERTa-GRU: Sentiment Analysis for Large Language Model

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Computers, Materials & Continua 2024年第6期79卷 4219-4236页

作者： Adel Assiri Abdu Gumaei Faisal Mehmood Touqeer abbas Sami Ullah Department of Informatics for Business College of BusinessKing Khalid UniversityAbha61421Saudi Arabia Department of Computer Science College of Computer Engineering and SciencesPrince Sattam bin Abdulaziz UniversityAl-Kharj11942Saudi Arabia School of Electrical and Information Engineering Zhengzhou UniversityZhengzhou450001China Department of Computer Science and Technology Beijing University of Chemical TechnologyBeijing100029China Department of Computer Science Government College University FaisalabadFaisalabadPunjab38000Pakistan

Modern technological advancements have made social media an essential component of daily *** media allow individuals to share thoughts,emotions,and *** analysis plays the function of evaluating whether the sentiment of the text is positive,negative,neutral,or any other personal emotion to understand the sentiment context of the *** analysis is essential in business and society because it impacts strategic *** analysis involves challenges due to lexical variation,an unlabeled dataset,and text distance *** execution time increases due to the sequential processing of the sequence ***,the calculation times for the Transformer models are reduced because of the parallel *** study uses a hybrid deep learning strategy to combine the strengths of the Transformer and Sequence models while ignoring their *** particular,the proposed model integrates the Decoding-enhanced with Bidirectional Encoder Representations from Transformers(BERT)attention(DeBERTa)and the Gated Recurrent Unit(GRU)for sentiment *** the Decoding-enhanced BERT technique,the words are mapped into a compact,semantic word embedding space,and the Gated Recurrent Unit model can capture the distance contextual semantics *** proposed hybrid model achieves F1-scores of 97%on the Twitter Large Language Model(LLM)dataset,which is much higher than the performance of new techniques.

关键词： DeBERTa GRU Naive Bayes LSTM sentiment analysis large language model

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Feasibility and reliability of agricultural crop height measurement using the laser sensor array

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Information Processing in Agriculture 2024年第2期11卷 228-236页

作者： Pejman Alighaleh Tarahom Mesri Gundoshmian Saeed Alighaleh abbas Rohani Department of Biosystems Engineering Faculty of AgricultureFerdowsi University of MashhadMashhadIran Department of Biosystems Engineering University of Mohaghegh ArdabiliArdabilIran Auckland Bioengineering Institute University of AucklandNew Zealand

Crop height measurement is widely used to analyze and estimate the overall crop condition and the amount of biomass *** only is manual measurement on a large scale time-consuming but also it is not ***,advanced equipment is available but they require technical skills and are not reasonable for *** article investigates the feasibility of a simple and low-cost measurement system that can monitor crops height of paddy rice and wheat using laser *** designing and fabricating,this system was tested and evaluated in both laboratory and farm *** the laboratory,paddy rice height was measured,and in the field section,the height detection system measured wheat *** results showed that the coefficient of determination(R3)between manual measurement and height detection system measurement for paddy rice was 0.96 and for wheat was ***,there was no significant difference between the two datasets at the level of 5%.Hence,this system can be a useful and accurate tool to monitor crops height in different growing steps.

关键词： Plant height Laser Rice Wheat Crop monitoring

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