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An Epigenetic Role for Disrupted Paternal Gene Expression in Postz.gotic Seed Abortion in Arabidopsis Interspecific Hybrids

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Molecular Plant 2015年第12期8卷 1766-1775页

作者： Ryan C. Kirkbride Helen Hong Yu Gyoungju Nah Changqing z.ang Xiaoli Shi z. jeffrey chen Department of Molecular Biosciences Center for Computational Biology and Bioinformatics and Institute for Cellular and Molecular Biology The University of Texas at Austin Austin TX 78712 USA These authors contributed equally to this article. present address: Department of Plant Science Research Institute of Agriculture and Life Sciences Seoul National University Seou1151-921 South Korea present address: Plants for Human Health Institute North Carolina State University 600 Laureate Way Kannapolis NC 28081 USA present address: Institute of Theoretical Physics Chinese Academy of Sciences PO Box 2735 Beijing 100080 China

Interspecific hybrids often increase the levels of heteroz.gosity and hybrid vigor, but some interspecific hybrid seeds are aborted shortly after fertiliz.tion. The mechanism behind this postz.gotic seed abortion is poorly understood. Here, we report genome-wide analysis of allelic expression changes in developing siliques and seeds in three F1 interspecific crosses between Arabidopsis thaliana （Col, Ler, or C24） and Arabidopsis arenosa. The majority of maternally expressed genes （MEGs） were shared among all three F1 interspecific crosses, whereas ~90% of 272 paternally expressed genes （PEGs） were found only in one or two F1 crosses, suggesting a role for disrupted paternal gene expression in seed abortion that varies in different crosses. Consistent with this notion, 12 PEGs in the infertile interspecific hybrids matched MEGs in fertile intraspecific hybrids. This disruption of PEGs in the interspecific hybrids was consistent with the upregulation of the genes in the paternal-excess interploidy cross （2X6） between a diploid mother and a hexaploid father, leading to the seed abortion. Moreover, a subset of PEGs in the interspecific crosses were also upregulated in the intraspecific hybrid metlXWT or meaXWT, in which the mutant of MET1 （DNA METHYL TRANSFERASE1） or MEDEA, a Polycomb Repressive Complex2 gene, was used as the maternal parent. These data suggest that maternal epigenetic factors and paternal gene expression play important roles in the postz.gotic seed abortion in interspecific hybrids or neo-allopolyploids.

关键词： epigenetics imprinting paternal gene expression polyploidy hybrid incompatibility seeddevelopment

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Rice Interploidy Crosses Disrupt Epigenetic Regulation, Gene Expression, and Seed Development

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Molecular Plant 2018年第2期11卷 300-314页

作者： Limei Wang Jingya Yuan Yujie Ma Wu Jiao Wenxue Ye Dong-Lei Yang Chuandeng Yi z. jeffrey chen State Key Laboratory of Crop Genetics and Germplasm Enhancement Nanjing Agricultural University 1 Weigang Road Nanjing 210095 China Department of Molecular Biosciences Institute for Cellular and Molecular Biology Center for Computational Biology and Bioinformatics The University of Texasat Austin Austin TX 78712 USA Jiangsu Key Laboratory of Crop Genetics and Physiology Yangzhou University Yangzhou 225009 China

Seed development in angiosperms requires a 2：1 maternal-to-paternal genome ratio （2m：lp） in the endo- sperm. When the ratio is disrupted, the seed development is impaired. Rice interploidy crosses result in endosperm failures, but the underlying molecular mechanisms remain unclear. Here, we report that the defective endosperm in rice interploidy crosses was associated with nonadditive expression of small RNAs and protein-coding genes. Interestingly, 24-nt small interfering RNAs were enriched in the 5＇ and 3＇ flanking sequences of nonadditively expressed genes in the interploidy crosses and were negatively associated with the expression of imprinted genes. Furthermore, some PRC2 family genes and DNA methylaUon-related genes including OsMETlb and OsCMT3a were upregulated in the 2x4 cross （polli- nating a diploid ＂mother＂ with a tetraploid ＂father＂） but repressed in the reciprocal cross. These different epigenetic effects could lead to precocious or delayed cellulariz.tion during endosperm development. Notably, many endosperm-preferred genes, including starch metabolic and storage protein genes during grain filling, were found to be associated with DNA methylation or H3K27me3, which are repressed in both 2×4 and 4 ×2 crosses. WUSCHEL homeobox2 （WOX2）-Iike （WOX2L）, an endosperm-preferred gene, was expressed specifically in the rice endosperm, in contrast to WOX2 expression in the Arabidopsis embryo. Disruption of WOX2L in transgenic rice by CRISPR/Cas9-mediated gene editing blocked starch and protein accumulation, resulting in seed abortion. In addition to gene repression, disrupting epigenetic process in the interploidy crosses also induced expression of stress-responsive genes. Thus, maintaining the 2m：lp genome ratio in the endosperm is essential for normal grain development in rice and other cereal crops.

关键词： seed polyploidy small RNA gene expression endosperm epigenetics

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棉纤维发育的基因组分析和基因表达谱

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棉花学报 2002年第Z1期14卷 49-页

作者： z. jeffrey chen

　　The goals of our cotton research program are to understand fiber developmental biology and improve fiber production using molecular and genomic tools. In the genome mapping project,we have developed a cotton genetic map using a moderate set of AFLP, SSR, and RFLP markers. Polymorphism was detected in two polyploid cotton cultivars, G. hirsutum L. var.　　……

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Fabrication and Mechano-sensing Characteristics of Bending Polypyrrole Actuator

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Journal of Wuhan University of Technology(Materials Science) 2025年第1期40卷 240-245页

作者： chen Jinyou HU Wei School of Automotive Engineering Hunan Financial&Industrial Vocational-technical CollegeHengyang 421002China College of Mechanical and Electrical Engineering Hunan Agricultural UniversityChangsha 410128China

To prepare a conductive polymer actuator with decent performance,a self-built experimental platform for the preparation of polypyrrole film is *** of the essential goals is to examine the mechanical characteristics of the actuator in the presence of various combinations of process parameters,combined with the orthogonal test method of"four factors and three levels".The bending and sensing characteristics of actuators of various siz.s are methodically examined using a self-made bending polypyrrole *** functional relationship between the bending displacement and the output voltage signal is established by studying the characteristics of the actuator sensor subjected to various degrees of *** experimental results reveal that the bending displacement of the actuator tip almost exhibits a linear variation as a function of length and *** the voltage reaches 0.8 V,the bending speed of the actuator tends to be ***,the mechanical properties of the self-assembled polypyrrole actuator are verified by the design and fabrication of the microgripper.

关键词： conductive polymer polypyrrole mechanical characteristics actuators sensing characteristics

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Carbon nanotube and conducting polymer composites for supercapacitors

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Progress in Natural Science:Materials International 2008年第7期18卷 777-788页

作者： Daniel Jewell George z. chen School of Chemical and Environmental and Mining Engineering University of Nottingham University ParkNottingham NG7 2RD UK

Composites of carbon nanotubes and conducting polymers can be prepared via chemical synthesis, electrochemical deposition on pre- formed carbon nanotube electrodes, or by electrochemical co-deposition. The composites combine the large pseudocapacitance of the conducting polymers with the fast charging/discharging double-layer capacitance and excellent mechanical properties of the carbon nanotubes. The electrochemically co-deposited composites are the most homogeneous and show an unusual interaction between the polymer and nanotubes, giving rise to a strengthened electron delocalisation and conjugation along the polymer chains. As a result they exhibit excellent electrochemical charge storage properties and fast charge/discharge switching, making them promising electrode mate- rials for high power supercapacitors.

关键词： Supercapacitor Carbon nanotube Conducting polymer

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Construction of 3D porous Cu_(1.81)S/nitrogen-doped carbon frameworks for ultrafast and long-cycle life sodium-ion storage

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International Journal of Minerals,Metallurgy and Materials 2025年第1期32卷 191-200页

作者： chen chen Hongyu Xue Qilin Hu Mengfan Wang Pan Shang z.yan Liu Tao Peng Deyang z.ang Yongsong Luo Key Laboratory of Microelectronics and Energy of Henan Province Henan Joint International Research Laboratory of New Energy Storage TechnologyCollege of Physics and Electronic EngineeringXinyang Normal UniversityXinyang 464000China School of Physics and Electronic Engineering Nanyang Normal UniversityNanyang 473061China

Transition metal sulfides have great potential as anode mterials for sodium-ion batteries(SIBs)due to their high theoretical specific ***,the inferior intrinsic conductivity and large volume variation during sodiation-desodiation processes seriously affect its high-rate and long-cyde performance,unbeneficial for the application as fast-charging and long-cycling SIBs ***,the three-dimensional porous Cu_(1.81)S/nitrogen-doped carbon frameworks(Cu_(1.81)S/NC)are synthesiz.d by the simple and facile sol-gel and annealing processes,which can accommodate the volumetric expansion of Cu_(1.81)S nanoparticles and accelerate the transmission of ions and electrons during Na^(+)insertion/extraction processes,exhibiting the excellent rate capability(250.6 mA·g^(-1)at 20.0 A·g^(-1))and outstanding cycling stability(70% capacity retention for 6000 cycles at 10.0 A·g^(-1))for ***,the Na-ion full cells coupled with Na_(3)V_(2)(PO_(4))_(3)/C cathode also demonstrate the satisfactory reversible specific capacity of 330.5 mAh·g^(-1)at 5.0 A·g^(-1)and long-cycle performance with the 86.9% capacity retention at 2.0 A·g^(-1)after 750 *** work proposes a promising way for the conversionbased metal sulfides for the applications as fast-charging sodium-ion battery anode.

关键词： copper sulfide nanoparticles porous carbon framework fast charging long-cycle performance sodium-ion full batteries

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Decoloriz.tion of Direct Black 22 by Aspergillus ficuum

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Journal of Environmental Sciences 2001年第4期13卷 472-475页

作者： Dong, X.-j. Du, z.-y. chen, z. Dept. of Biology/Environmental Sci. Wenzhou Normal College Wenzhou 325003 China

The decoloriz.tion of Direct Black 22 by Aspergillus ficuum has been studied. It was found that Aspergillus ficuum could effectively decoloriz. Direct Black 22 especially when grown as pelleted mycelia. Results showed that the media containing Direct Black 22 at 50 mg/L could be decoloriz.d by 98.05% of the initial color in 24 h. The optimum pH and temperature of decoloriz.tion are 4.0 and 33 °C respectively. Aeration was quite beneficial to decoloriz.tion. Medium composition and the concentration of Direct Black 22 could affect the rate of decoloriz.tion. The dye degraded products assayed by UV-visible spectrophotometer and macroscopic observation showed that the decoloriz.tion of Direct Black 22 by mycelial pellets includes two important processes: bioadsorption and biodegradation. The degradation experiment agree with the Michaelis-Menten kinetics equation.

关键词： Bioassay Biodegradation Color Concentration (process) Dyes pH Ultraviolet spectrophotometers

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Low-temperature chlorination roasting technology for the simultaneous recovery of valuable metals from spent LiCoO_(2)cathode material

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International Journal of Minerals,Metallurgy and Materials 2025年第1期32卷 80-91页

作者： Junjie Shi Changle Hou Jingjing Dong Dong chen Jianz.ong Li Key Laboratory for Ecological Metallurgy of Multimetallic Mineral(Ministry of Education) Northeastern UniversityShenyang 110819China School of Metallurgy Northeastern UniversityShenyang 110819China

With the continuous increase in the disposal volume of spent lithium-ion batteries(LIBs),properly recycling spent LIBs has become essential for the advancement of the circular *** study presents a systematic analysis of the chlorination roasting kinetics and proposes a new two-step chlorination roasting process that integrates thermodynamics for the recycling of LIB cathode *** activation energy for the chloride reaction was 88.41 kJ/mol according to thermogravimetric analysis–derivative thermogravimetry data obtained by using model-free,model-fitting,and z.α)function(αis conversion rate).Results indicated that the reaction was dominated by the first-order(F1)model when the conversion rate was less than or equal to 0.5 and shifted to the second-order(F2)model when the conversion rate exceeded *** conditions were determined by thoroughly investigating the effects of roasting temperature,roasting time,and the mass ratio of NH_(4)Cl to LiCoO_(2).Under the optimal conditions,namely 400℃,20 min,and NH_(4)Cl/LiCoO_(2)mass ratio of 3:1,the leaching efficiency of Li and Co reached 99.43% and 99.05%,*** of the roasted products revealed that valuable metals in LiCoO_(2)transformed into CoCl_(2) and ***,the reaction mechanism was elucidated,providing insights for the establishment of a novel low-temperature chlorination roasting technology based on a crystal structure *** technology can guide the development of LIB recycling processes with low energy consumption,low secondary pollution,high recovery efficiency,and high added value.

关键词： spent lithium-ion battery thermodynamics chlorination roasting kinetics circular economy

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Arabidopsis thaliana histone deacetylase1(AtHD1)is localiz.d in euchromatic regions and demonstrates histone deacetylase activity in vitro

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Cell Research 2006年第5期16卷 479-488页

作者： Paulus M Fong z.jeffrey chen Department of Soil and Crop Sciences Texas A&M UniversityCollege StationTX 77843USA Molecular Cell and Developmental Biology University of Texas at AustinAustinTX78712USA

Arabidopsis thaliana histone deacetylase 1 (AtHD1 or AtHDA19),a homolog of yeast RPD3,is a global regulator ofmany physiological and developmental processes in *** spite of the genetic evidence for a role of AtHD1 in plantgene regulation and development,the biochemical and cellular properties of AtHD1 are poorly *** we reportcellular localiz.tion patterns of AtHD1 in vivo and histone deacetylase activity in *** transient and stable expres-sion of a green fluorescent protein (GFP)-tagged AtHD1 in onion cells and in roots,seeds and leaves of the transgenicArabidopsis,respectively,revealed that AtHD1 is localiz.d in the nucleus presumably in the euchromatic regions andexcluded from the *** localiz.tion patterns of AtHD1 are different from those of AtHD2 and AtHDA6 thatare involved in nucleolus formation and silencing of transgenes and repeated DNA elements,*** addition,a histone deacetylase activity assay showed that the recombinant AtHD1 produced in bacteria demonstrated a specifichistone deacetylase activity in *** data suggest that AtHD1 is a nuclear protein and possesses histone deacetylaseactivities responsible for global transcriptional regulation important to plant growth and development.

关键词： Arabidopsis histone deacetylase RPD3 subcellular localiz.tion gene silencing chromatin

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Electrochemical manufacturing of nanocarbons from carbon dioxide in molten alkali metal carbonate salts： roles of alkali metal cations

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Advances in Manufacturing 2016年第1期4卷 23-32页

作者： Happiness V. Ijije George z. chen Department of Chemical and Environmental Engineering Faculty of Engineering University of NottinghamNottingham NG7 2RD UK Department of Chemical and Environmental Engineering and Centre for Sustainable Energy Technologies Faculty ofScience and Engineering University of Nottingham NingboChina Ningbo 315100 People's Republic of China

One simple and fast way to manufacture a useful product from CO2 is to capture the gas by, and then carry out electrolysis in molten alkali metal carbonates. Carbon electro-deposition in molten Li2CO3-Na2CO3- KaCO3 （molar ratio： 43.5：31.5：25.0） has been widely reported in literature. However, studies in each of the individual alkali metal carbonates either have received less attention or are simply lacking in literature. Electrochem- ical studies of these molten carbonates are important to understand their underlying processes and reactions during the electrolysis. In this work, cyclic voltammograms （CVs） were recorded in each of the above-mentioned molten alkali carbonate salts using a 0.25 mm diameter Pt wire working electrode. In molten Na2CO3 and K2CO3, the main cathodic reaction was likely the formation of alkali metal, while that in Li2CO3 was carbon deposition. The results also suggest that other competing reactions such as CO and alkali metal carbide formation are possible as well in dif- ferent molten salts. On the CVs, the anodic current peaks observed are mostly associated with the oxidation of cathodic products. Flake/ring/sheet-like structures and quasi-spherical particles were observed in the produced carbon. The morphology of the carbon contained both amorphous and graphitic structures, which varied with different electrolysis variables.

关键词： Carbon capture and utilisation Electro-deposition Cyclic voltammetry Nanocarbons Moltensalts Alkali metal carbonates

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