检索结果-南通市图书馆

Comparative analysis of metabolic network of pathogens

Frontiers in Biology 2017年第2期12卷 139-150页

作者： Kumar Gaurav yasha hasija Department of Biotechnology Delhi Technological University Delhi - 110042 India

BACKGROUND： Metabolic networks are complex and system of highly connected chemical reactions and hence it needs a system level computational approach to identify the genotype- phenotype relationship. The study of essential genes and reactions and synthetic lethality of genes and reactions plays a crucial role in explaining functional links between genes and gene function predictions. METHODS： Flux balance analysis （FBA） has been developed as a powerful method for the in silico analyses of metabolic networks. In this study, we present the comparative analysis of the genomic scale metabolic networks of the four microorganisms i.e. Salmonella typhimurium, Mycobacterium tuberculosis, Staphylococcus aureus, and Helicobacter pylori. The fluxes of all reaction were obtained and the growth rate of the organism was calculated by setting the biomass reaction as the objective function. RESULTS ＆ CONCLUSIONS： The average lethality fraction of all the four organisms studied ranged from 0.2 to 0.6. It was also observed that there are very few metabolites which are highly connected. Those metabolites that are highly connected are supposed to be the ‘global players＇ similar to the hub protein in the protein - protein interaction network.

关键词： essential genes synthetic lethal genes metabolite connectivity robustness analysis

来源：

维普期刊数据库评论

在线全文

维普期刊数据库

学校读者我要写书评

暂无评论

miRACA： A database for miRNAs associated with cancers and age related disorders （ARD）

引用

Frontiers in Biology 2018年第1期13卷 36-50页

作者： Razia Rahman Lokesh Kumar Gahlot yasha hasija Department of Biotechnology Delhi Technological University Shahbad Daulatpur Main Bawana Road Delh# l l O042 India

BACKGROUND： With the given diversity and abundance of several targets of miRNAs, they functionally appear to interact with several elements of the multiple cellular networks to maintain physiologic homeostasis. They can function as tumor suppressors or oncogenes, whose under or overexpression has both diagnostic and prognostic significance in various cancers while being implicated as prospective regulators of age-related disorders （ARD） as well. Establishing a concatenate between ARD and cancers by looking into the insights of the shared miRNAs may have a practical relevance. METHODS： In the present work, we performed network analysis of miRNA-disease association and miRNA-target gene interaction to prioritize miRNAs that play significant roles in the manifestation of cancer as well as ARD. Also, we developed a repository that stores miRNAs common to both ARD and cancers along with their target genes. RESULTS： We have comprehensively curated all miRNAs that we found to be shared in both the diseases in the human genome and established a database, miRACA （Database for microRNAs Associated with Cancers and ARD） that currently houses information of 1648 miRNAs that are significantly associated with 38 variants supported with pertinent data. It has been made available online at http：//***/miraca/for easy retrieval and utilization of data by the scientific community. CONCLUSION： To the best of our knowledge, our database is the first attempt at compilation of such data. We believe this work may serve as a significant resource and facilitate the analysis of miRNA regulatory mechanisms shared between cancers and ARD to apprehend disease etiology.

关键词： miRNA cancer age related disorders (ARD) target genes database

来源：

维普期刊数据库评论

在线全文

维普期刊数据库

学校读者我要写书评

暂无评论

欢迎您,

建议与咨询留下您的常用邮箱和电话号码，以便我们向您反馈解决方案和替代方法

时间限定

文献类型

馆藏选择

核心期刊

语言

文献类型

帮助

文字说明：

检索规则说明：

检索范例：

分类表

所选分类

限定检索结果

文献类型

馆藏范围

日期分布

学科分类号

主题

机构

作者

语言

在线全文

在线全文

请选择保存的检索档案：

请选择收藏分类：

通借通还

欢迎您,

建议与咨询 留下您的常用邮箱和电话号码，以便我们向您反馈解决方案和替代方法

时间限定

文献类型

馆藏选择

核心期刊

语言

文献类型

帮助

文字说明：

检索规则说明：

检索范例：

分类表

所选分类

限定检索结果

文献类型

馆藏范围

日期分布

学科分类号

主题

机构

作者

语言

在线全文

在线全文

请选择保存的检索档案： 新增检索档案 确定 取消

请选择收藏分类： 新增自定义分类 确定 取消

通借通还

建议与咨询留下您的常用邮箱和电话号码，以便我们向您反馈解决方案和替代方法

请选择保存的检索档案：

请选择收藏分类：