Pan-genomes from large natural populations can capture genetic diversity and reveal genomic *** de novo long-read assembly,we generated a graphbased super pan-genome of a 251-accession panel comprising both cultivated...
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Pan-genomes from large natural populations can capture genetic diversity and reveal genomic *** de novo long-read assembly,we generated a graphbased super pan-genome of a 251-accession panel comprising both cultivated and wild species of Asian and African *** pan-genome reveals extensive structural variations(SVs) and gene presence/absence ***,our pan-genome enables the accurate identification of nucleotide-binding leucine-rich repeat genes and characterization of their inter-and intraspecific ***,we uncovered grain weight-associated SVs which specify traits by affecting the expression of their nearby *** characterized genetic variants associated with submergence tolerance,seed shattering and plant architecture and found independent selection for a common set of genes that drove adaptation and domestication in Asian and African *** super pan-genome facilitates pinpointing of lineage-specific haplotypes for trait-associated genes and provides insights into the evolutionary events that have shaped the genomic architecture of various rice species.
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