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Community structure of aerobic anoxygenic phototrophic bacteria in algae-and macrophyte-dominated areas in Taihu Lake,China

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Journal of Oceanology and Limnology 2022年第5期40卷 1855-1867页

作者： Limei shi Yuanfeng CAI xiaoli shi Min ZHANG Qingfei ZENG Fanxiang KONG Ping XU State Key Laboratory of Lake Science and Environment Nanjing Institute of Geography and LimnologyChinese Academy of SciencesNanjing 210008China State Key Laboratory of Soil and Sustainable Agriculture Institute of Soil ScienceChinese Academy of SciencesNanjing 210008China The Philips Institute of Oral and Craniofacial Molecular Biology Virginia Commonwealth UniversityRichmondVA 23298-0566United States of America

Aerobic anoxygenic phototrophic bacteria(AAPB)repre sent a major group of bacterioplankton assemblages in many water systems and some are assumed to be closely associated with phytoplankton.However,studies on relationships between AAPB and cyanobacterial blooms are in scarcity.The dynamics of the abundance and diversity of AAPB was compared based on pufM gene in Meiliang Bay(featured by cyanobacterial blooms)and East Bay(featured by macrophyte)of Taihu Lake,a shallow subtropical lake in the East China plain.AAPB abundance was not significantly different between the two sites,and they were positively correlated with dissolved organic carbon(DOC)concentration.The ratios of AAPB to total bacteria varied from 3.4%to 11.5%and peaked in winter in both site s.No significant differences of AAPB community compositions were detected between the two sites,but there was a separation between warm seasons(June,August,and October)and cold seasons(December,February,and April).Rhizobiales and Limnohabitans-like pufM sequences were significantly contributors for the difference between two seasons,and specially enriched in cold seasons.Chlorophyll a(Ch1 a)and DOC were the most significant variables influencing the AAPB community structure.Furthermore,Porphyrobacter and Rhodospirillales-like pufM sequences were positively correlated with Ch1 a,indicating potential influence of cyanobacterial blooms on these AAPB taxa.These results suggested that diverse AAPB ecotypes coexisted in Taihu Lake,and their ecological role in carbon cycling in the lake may not be ignored.

关键词： aerobic anoxygenic phototrophic bacteria cyanobacterial blooms dissolved organic carbon Alphaproteobacteria chlorophyll a

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Cyanobacterial blooms in China:ecology,toxicity,and treatment

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Journal of Oceanology and Limnology 2022年第5期40卷 1693-1695页

作者： Renhui LI xiaoli shi Nanqin GAN Junyi ZHANG Xuechu CHEN National and Local Joint Engineering Research Center of Ecological Treatment Technology for Urban Water Pollution Wenzhou UniversityWenzhou 325035China State Key Laboratory of Lake Science and Environment Nanjing Institute of Geography and LimnologyChinese Academy of SciencesNanjing 210008China State Key Laboratory of Freshwater Ecology and Biotechnology Institute of HydrobiologyChinese Academy of SciencesWuhan 430072China Wuxi Environmental Monitoring Center Wuxi 214121China School of Ecological and Environmental Sciences East China Normal UniversityShanghai 200241China

Cyanobacterial blooms are one of the major threats to the health of aquatic ecosystems,and are increasing globally due to the synergistic eff ects of human activities and global climate change.The 7^(th) National Cyanobacteria Bloom Forum was successfully held in May 28-30,2021 in Guiyang,Guizhou Province,China.The forum established a platform for exchanging views on the concerns of cyanobacterial blooms from Chinese researchers,lake managers,and treatment engineers.This special issue,“Cyanobacterial blooms in China:ecology,toxicity,and treatment”in Journal of Oceanography and Limnology,presents a collection of 14 papers on the physiological features and the infl uence on their concurrent aquatic biology of diff erent cyanobacterial groups.

关键词： treatment Guizhou globally

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Comparison of three flocculants for heavy cyanobacterial bloom mitigation and subsequent environmental impact

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Journal of Oceanology and Limnology 2022年第5期40卷 1764-1773页

作者： Kaixuan LIU Lei JIANG Jinsheng YANG Shuzhan MA Kaining CHEN Yufeng ZHANG xiaoli shi Department of Environmental Science and Engineering Nanjing Tech UniversityNanjing 211816China State Key Laboratory of Lake Science and Environment Nanjing Institute of Geography and LimnologyChinese Academy of SciencesNanjing 210008China University of Chinese Academy of Sciences Beijing 100049China Jiangsu Collaborative Innovation Center of Regional Modern Agriculture&Environmental Protection Huaiyin Normal UniversityHuaiyin 223001China

Cyanobacteria can accumulate as a heavy biomass on the leeward side of large eutrophic lakes,posing a potential threat to public health.The mitigating capacity of three flocculants and their potential impacts on the major environmental features of water and sediments was evaluated.Results indicate that polyaluminum chloride(PAC)and ferric chloride(FeCl)are efficient flocculants that can rapidly mitigate cyanobacterial blooms with chlorophyll-a concentrations higher tnan 1500 ug/L within 15 min.In comparison,cationic starch with chitosan could only treat cyanobacterial blooms in chlorophyll-a concentrations of less than 200μg/L.The addition of FeClcaused a decline in the pH value,while dissolved oxygen in the water column dropped to 2 mg/L during cationic starch with chitosan treatment for a high cyanobacterial biomass group.Thus,a combination of flocculants and oxygenators should be considered when treating high-concentration cyanobacterial blooms for emergency purposes.Additionally,the cell lysis of cyanobacteria caused by cationic starch with chitosan can result in an increase in total dissolved phosphorus and total dissolved nitrogen.Furthermore,the high accumlation of nutrients in sediments after the settling of cyanobacteria can cause high internal phosphorus pollution.The increase in the total organic carbon of the sediments can threaten lake restoration achieved by planting submerged macrophytes.

关键词： cyanobacterial bloom emergency control flocculants lake restoration

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The impact of the accumulation of algal blooms on reed wetlands in the littoral zones of Chaohu Lake

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Journal of Oceanology and Limnology 2022年第5期40卷 1750-1763页

作者： Shuzhan MA Yue WU Siwen CHEN Bingfa CHEN Cheng LIU Xiaozhi GU xiaoli shi Kaining CHEN State Key Laboratory of Lake Science and Environment Nanjing Institute of Geography and LimnologyChinese Academy of SciencesNanjing 210008China University of Chinese Academy of Sciences Beijing 100049China Institute of Agricultural Resources and Environmental Sciences Jiangsu Academy of Agricultural SciencesNanjing 210014China Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment Suzhou University of Science and TechnologySuzhou 215009China

In a large eutrophic lake,the littoral zone is normally an area with high-density elevated aquatic plant life,including algal blooms,where the presence of reed wetlands allows the accumulation of algae.In this study,the impact of accumulated algal blooms in reed wetlands in the littoral zone s of Chaohu Lake was investigated seasonally from 2018 to 2019.The concentrations of chlorophyll a(Chl a),total nitrogen(TN),and total phosphorus(TP)were much higher in the reed-covered littoral zones(RCLZ)than in the unvegetated littoral zones(ULZ),indicating that more algal biomass was trapped and accumulated in the RCLZ.Algal biomass could be horizontally transported to downwind littoral zones under low wind speeds,favoring the establishment of blooms.Algal accumulation levels were highest in summer due to high water temperatures and algal biomasses.Likewise,the northern littoral zones were conducive to the development of large algal blooms because of the wind pattern.The values of TN,TP,Chl a,and loss on ignition in surface sediments were higher in the RCLZ than in the ULZ.Moreover,the diffusive fluxes of ammonium and soluble reactive pho sphorus were also higher in the RCLZ than in the ULZ.Considering the capability of reed wetlands to trap algae,mechanical salvage and other physical methods should be adopted to eliminate algal biomass when massive blooms accumulate in the RCLZ.

关键词： Chaohu Lake littoral zone reed wetlands algal blooms

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Thoracic interstitial injection of drug-liposomes in mice for treating atherosclerosis

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Nano Research 2023年第4期16卷 5311-5321页

作者： Tun Yan Huizhen Sun Yahong shi Ya Gao Xi Lu Kai Li Yuting Zhu Qiang Zhang Tingting Li Zhongxian Li Xiaohan Zhou Yuting Guo Yinglu Ji xiaoli shi Dong Han College of Life Science Beijing University of Chinese MedicineBeijing 100029China CAS Center for Excellence in Nanoscience National Center for Nanoscience and TechnologyBeijing 100190China College of Pharmacy Baotou Medical CollegeBaotou 10040China Hebei Key Laboratory of Nanobiotechnology Yanshan UniversityQinhuangdao 066004China University of Chinese Academy of Sciences Beijing 100049China

Intervaginal space injection(ISI)is a novel mode of administration investigated over the last decade.After injecting nanoparticles into the intervaginal space,they can be transported along low flow resistance channels into the interstitial space.This transport has a certain delivery direction,and site-specific injection can work on specific organs or tissues.In this study,the thorax,a new ISI site in the interstitial surrounding the internal thoracic artery named the thoracic interstitial injection(tISI)was investigated.To prove the targeting ability of the tISI,two sizes of gold nanoparticles(AuNPs)(47 and 87 nm)were administered to mice.After 1 h,the biodistribution of AuNPs in the tissues was measured via single particle inductively coupled plasma mass spectrometry(spICP-MS).The results showed that the concentration of AuNPs in the aorta after tISI injection was significantly higher than that after intravenous injection.Moreover,fewer nanoparticles with larger particle sizes were observed to have entered the blood and were better targeted to the aorta.Thereafter,tanshinone IIa sodium sulfonate liposomes were administered for the treatment of aortic atherosclerosis.The proportion of aortic plaques in atherosclerotic Apoe-/-mice administered via tISI was significantly lower than that in other model animals(P<0.001).Furthermore,the proteoglycan content and CD68-positive cell count in the plaques were significantly reduced.The vascular elastic fibers at the plaque site were thickened,and fractures were reduced.tISI was,therefore,determined to be an effective strategy for the treatment of atherosclerotic aortic plaques.

关键词： thoracic intervaginal space injection(tISI) gold nanoparticle(AuNP) tanshinone IIa sodium sulfonate liposome atherosclerosis adventitia

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Current advances in genome sequencing of common wheat and its ancestral species

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The Crop Journal 2018年第1期6卷 15-21页

作者： xiaoli shi Hong-Qing Ling State Key Laboratory of Plant Cell and Chromosome Engineering Institute of Genetics and Developmental Biology Chinese Academy of Sciences College of Life Sciences University of Chinese Academy of Sciences

Common wheat is an important and widely cultivated food crop throughout the world.Much progress has been made in regard to wheat genome sequencing in the last decade.Starting from the sequencing of single chromosomes/chromosome arms whole genome sequences of common wheat and its diploid and tetraploid ancestors have been decoded along with the development of sequencing and assembling technologies. In this review, we give a brief summary on international progress in wheat genome sequencing, and mainly focus on reviewing the effort and contributions made by Chinese scientists.

关键词： Genome sequencing Diploid wheat Tetraploid wheat Triticum aestivum

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Quantification of microcystin-producing and non-microcystin producing Microcystis populations during the 2009 and 2010 blooms in Lake Taihu using quantitative real-time PCR

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Journal of Environmental Sciences 2012年第2期24卷 284-290页

作者： Daming Li Fanxiang Kong xiaoli shi Linlin Ye Yang Yu Zhen Yang State Key Laboratory of Lake Science and Environment Nanjing Institute of Geography and Limnology Chinese Academy of Sciences Nanjing 210008 China Graduate University of Chinese Academy of Sciences Beijing 100049 China

Lake Taihu,a large,shallow hypertrophic freshwater lake in eastern China,has experienced lake-wide toxic cyanobacterial blooms annually during summer season in the past decades.Spatial changes in the abundance of hepatotoxin microcystin-producing and nonmicrocystin producing Microcystis populations were investigated in the lake in August of 2009 and 2010.To monitor the densities of the total Microcystis population and the potential microcystin-producing subpopulation,we used a quantitative real-time PCR assay targeting the phycocyanin intergenic spacer（PC-IGS） and the microcystin synthetase gene（mcyD）,respectively.On the basis of quantification by real-time PCR analysis,the abundance of potential toxic Microcystis genotypes and the ratio of the mcyD subpopulation to the total Microcystis varied significantly,from 4.08×104 to 5.22×107 copies/mL,from 5.7% to 65.8%,respectively.Correlation analysis showed a strong positive relationship between chlorophyll-a,toxic Microcystis and total Microcystis;the abundance of toxic Microcystis correlated positively with total phosphorus and ortho-phosphate concentrations,but negatively with TN：TP ratio and nitrate concentrations.Meanwhile the proportion of potential toxic genotypes within Microcystis population showed positive correlation with total phosphorus and ortho-phosphate concentrations.Our data suggest that increased phosphorus loading may be a significant factor promoting the occurrence of toxic Microcystis bloom in Lake Taihu.

关键词： microcystin-producing Microcystis real-time PCR toxic cyanobacterial bloom microcystin synthetase gene cluster

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Effects of elevated CO_2 on dynamics of microcystin-producing and non-microcystin-producing strains during Microcystis blooms

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Journal of Environmental Sciences 2015年第1期27卷 251-258页

作者： Li Yu Fanxiang Kong xiaoli shi Zhen Yang Min Zhang Yang Yu State Key Laboratory of Lake Science and Environment Nanjing Institute of Geography and Limnology Chinese Academy of Sciences University of Chinese Academy of Sciences

In an attempt to elucidate the effects of different CO2concentrations（270, 380, and 750 μL/L） on the competition of microcystin-producing（MC-producing） and non-MC-producing Microcystis strains during dense cyanobacteria blooms, an in situ simulation experiment was conducted in the Meiliang Bay of Lake Taihu in the summer of 2012. The abundance of total Microcystis and MC-producing Microcystis genotypes was quantified based on the 16 S r DNA and mcy D gene using real-time PCR. The results showed that atmospheric CO2 elevation would significantly decrease the p H value and increase the dissolved inorganic carbon（DIC） concentration.Changes in CO2 concentration did not show significant influence on the abundance of total Microcystis population. However, CO2 concentrations may be an important factor in determining the subpopulation structure of Microcystis. The enhancement of CO2 concentrations could largely increase the competitive ability of non-MC-producing over MC-producing Microcystis, resulting in a higher proportion of non-MC-producing subpopulation in treatments using high CO2 concentrations. Concurrently, MC concentration in water declined when CO2 concentrations were elevated. Therefore, we concluded that the increase of CO2 concentrations might decrease potential health risks of MC for human and animals in the future.

关键词： Microcystis Microcystin Inorganic carbon Real-time PCR Harmful cyanobacterial blooms

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Fine mapping and validation of a stable QTL for thousand-kernel weight in wheat(Triticum aestivum L.)

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作物学报:英文版 2023年第5期11卷 1491-1500页

作者： Deyuan Meng Aamana Batool Yazhou Xuan Ruiqing Pan Na Zhang Wei Zhang Liya Zhi xiaoli Ren Wenqing Li Jijie Li Yanxiao Niu Shuzhi Zheng Jun Ji xiaoli shi Lei Wang Hongqing Ling Chunhua Zhao Fa Cui Xigang Liu Junming Li Liqiang Song Center for Agricultural Resources Research Institute of Genetics and Developmental BiologyThe Innovative Academy of Seed DesignChinese Academy of SciencesShijiazhuang 050022HebeiChina Ministry of Education Key Laboratory of Molecular and Cellular Biology Hebei Research Center of the Basic Discipline of Cell BiologyHebei Key Laboratory of Molecular and Cellular BiologyCollege of Life SciencesHebei Normal UniversityShijiazhuang 050024HebeiChina State Key Laboratory of North China Crop Improvement and Regulation College of AgronomyHebei Agricultural UniversityBaoding 071000HebeiChina State Key Laboratory of Plant Cell and Chromosome Engineering Chinese Academy of SciencesBeijing 100101China Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong School of AgricultureLudong UniversityYantai 264025ShandongChina Hebei Collaboration Innovation Center for Cell Signaling Shijiazhuang 050024HebeiChina College of Life Science University of Chinese Academy of SciencesBeijing 100049China

Thousand-kernel weight(TKW)is a measure of grain weight,a target of wheat breeding.The object of this study was to fine-map a stable quantitative trait loci(QTL)for TKW and identify its candidate gene in a recombinant inbred line(RIL)population derived from the cross of Kenong 9204(KN9204)and Jing411(J411).On a high-density genetic linkage map,24,26 and 25 QTL were associated with TKW,kernel length(KL),and kernel width(KW),respectively.A major and stable QTL,QTkw-2D,was mapped to an8.3 cM interval on chromosome arm 2DL.By saturation of polymorphic markers in its target region,QTkw-2D was confined to a 9.13 Mb physical interval using a secondary mapping population derived from a residually heterozygous line(F6:7).This interval was further narrowed to 2.52 Mb using QTkw-2D near-isogenic lines(NILs).NILs~(KN9204)had higher fresh and dry weights than NILsJ411at various grain-filling stages.The TKW and KW of NILs~(KN9204)were much higher than those of NILsJ411in field trials.By comparison of both DNA sequence and expression between KN9204 and J411,TraesCS2D02G460300.1(TraesKN2D01HG49350)was assigned as a candidate gene for QTkw-2D.This was confirmed by RNA sequencing(RNA-seq)of QTkw-2D NILs.These results provide the basis of map-based cloning of QTkw-2D,and DNA markers linked to the candidate gene may be used in marker-assisted selection.

关键词： Wheat Thousand-kernel weight Fine mapping Candidate gene

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An Epigenetic Role for Disrupted Paternal Gene Expression in Postzygotic Seed Abortion in Arabidopsis Interspecific Hybrids

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Molecular Plant 2015年第12期8卷 1766-1775页

作者： Ryan C. Kirkbride Helen Hong Yu Gyoungju Nah Changqing Zhang xiaoli shi Z. Jeffrey Chen Department of Molecular Biosciences Center for Computational Biology and Bioinformatics and Institute for Cellular and Molecular Biology The University of Texas at Austin Austin TX 78712 USA These authors contributed equally to this article. present address: Department of Plant Science Research Institute of Agriculture and Life Sciences Seoul National University Seou1151-921 South Korea present address: Plants for Human Health Institute North Carolina State University 600 Laureate Way Kannapolis NC 28081 USA present address: Institute of Theoretical Physics Chinese Academy of Sciences PO Box 2735 Beijing 100080 China

Interspecific hybrids often increase the levels of heterozygosity and hybrid vigor, but some interspecific hybrid seeds are aborted shortly after fertilization. The mechanism behind this postzygotic seed abortion is poorly understood. Here, we report genome-wide analysis of allelic expression changes in developing siliques and seeds in three F1 interspecific crosses between Arabidopsis thaliana （Col, Ler, or C24） and Arabidopsis arenosa. The majority of maternally expressed genes （MEGs） were shared among all three F1 interspecific crosses, whereas ~90% of 272 paternally expressed genes （PEGs） were found only in one or two F1 crosses, suggesting a role for disrupted paternal gene expression in seed abortion that varies in different crosses. Consistent with this notion, 12 PEGs in the infertile interspecific hybrids matched MEGs in fertile intraspecific hybrids. This disruption of PEGs in the interspecific hybrids was consistent with the upregulation of the genes in the paternal-excess interploidy cross （2X6） between a diploid mother and a hexaploid father, leading to the seed abortion. Moreover, a subset of PEGs in the interspecific crosses were also upregulated in the intraspecific hybrid metlXWT or meaXWT, in which the mutant of MET1 （DNA METHYL TRANSFERASE1） or MEDEA, a Polycomb Repressive Complex2 gene, was used as the maternal parent. These data suggest that maternal epigenetic factors and paternal gene expression play important roles in the postzygotic seed abortion in interspecific hybrids or neo-allopolyploids.

关键词： epigenetics imprinting paternal gene expression polyploidy hybrid incompatibility seeddevelopment

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