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HepG2 cells support viral replication and gene expression of hepatitis C virus genotype 4 in vitro

World Journal of Gastroenterology 2006年第30期12卷 4836-4842页

作者： mostafa K el-Awady Ashraf A Tabll Yasmine S el-Abd mahmoud m Bahgat Hussein A Shoeb Samar S Youssef Noha G Bader el Din el-Rashdy m Redwan maha el-Demellawy moataza H Omran wael T el-Garf Said A Goueli Department of Biomedical Technology National Research Center Tahrir Street PO 12622 Dokki Cairo Egypt Department of medicinal Chemistry Na- tional Research Center Tahrir Street PO 12622 Dokki Cairo Egypt Department of microbiology and Immunology Faculty of Pharmacy Cairo University Cairo Egypt Genetic Engineering and Biotechnology Research Institute New Borg El-Arab City Alexandria Egypt Department of Pathology School of medicine University of Wisconsin Madison WI United States

AIm： TO establish a cell culture system with longterm replication of hepatitis C virus （HCV） genome and expression of viral antigens in vitro. mETHODS： HepG2 cell line was tested for its susceptibility to HCV by incubation with a serum from a patient with chronic hepatitis C. Cells and supernatant were harvested at various time points during the culture. Culture supernatant was tested for its ability to infect na＇ive cells. The presence of minus （antisense） RNA strand, and the detection of core and E1 antigens in cells were examined by RT-PCR and immunological techniques （flow cytometry and Western blot） respectively. RESULTS： The intracellular HCV RNA was first detected on d 3 after infection and then could be consistently detected in both cells and supernatant over a period of at least three months. The fresh cells could be infected with supernatant from cultured infected cells. Flow cytometric analysis showed surface and intracellular HCV antigen expression using in house made polyclonal antibodies （anti-core, and anti-E1）. Western blot analysis showed the expression of a cluster of immunogenic peptides at molecular weights extended between 31 and 45 kDa in an one month old culture of infected cells whereas this cluster was undetectable in uninfected HepG2 cells. CONCLUSION： HepG2 cell line is not only susceptible to HCV infection but also supports its replication in vitro. Expression of HCV structural proteins can be detected in infected HepG2 cells. These cells are also capable of shedding viral particles into culture media which in turn become infectious to uninfected cells.

关键词： Hepatitis C virus In vitro propagation Genomic replication Gene expression HepG2 cells

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Efficiency of Bio-Fertilizing as One of the Natural Alternatives to Improve the Growth of Khaya senegalensis and Swietenia mahagoni Trees and for Sustainability

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Agricultural Sciences 2024年第2期15卷 292-310页

作者： Safaa A. S. Ghorab Nashwa H. mohamed Nader A. el-Shanhorey Nabal S. el-Shahat Amr R. Rabie Forestry and Timber Trees Department Horticulture Research Institute Agricultural Research Center Ismailia Egypt Forestry and Timber Trees Department Horticulture Research Institute Agricultural Research Center Alexandria Egypt Botanical Gardens Department Horticulture Research Institute Agricultural Research Center Alexandria Egypt Forestry and Timber Trees Department Horticulture Research Institute Agricultural Research Center Giza Egypt

A field experiment was carried out at Ismailia Research Station, Ismailia Governorate from 2020-2022 to improve the growth of Khaya senegalensis and Swietenia mahagoni by using a combination of mineral fertilizer (NPK) and biological fertilizer (Azotobacter chroococcum, Bacillus megatherium, and Bacillus circulant) as recommended dose under new sandy soils conditions. Split plot designed with four treatments (Control, (50% mineral fertilizer (m.) + 50% Biological fertilizer (Bio.)), 100% m. and 100% Bio.) of each species. Vegetative growth, leaf area, tree biomass, stored carbon, basal area, tree volume, and in the soil both of microbial account and mineral content were determined. The experimental results showed no significant differences between studied species among the most studied parameters except for Khaya senegalensis which gave the highest significant difference in root biomass and below-stored carbon than Swietenia mahagoni. Evidently, the highest significant growth parameters were 100% mineral fertilizer followed by (50% m. + 50% Bio.) as compared with control. No significant difference between 100% m. and (50% m. + 50% Bio.) of shoot dry biomass (15.19 and 12.02 kg, respectively) and above-stored carbon (0.28 and 0.22 mt, respectively). microbial account and mineral content in soil were improved after cultivation of tree species compared to before planting and control, especially with 50% mineral fertilizer and 50% bio-fertilizer treatment. In conclusion, a treatment containing 50% mineral fertilizer and 50% bio-fertilizer has led to the ideal Khaya senegalensis and Swietenia mahagoni growth in sandy soil for cheaper and sustainable.

关键词： Khaya senegalensis Swietenia mahagoni mineral Fertilizer Bio-Fertilizer Growth Parameters Tree Biomass Stored Carbon Sustainable

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Efficient Data Augmentation Techniques for Improved Classification in Limited Data Set of Oral Squamous Cell Carcinoma

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Computer modeling in Engineering & Sciences 2022年第6期131卷 1387-1401页

作者： wael Alosaimi m.Irfan Uddin Department of Information Technology College of Computers and Information TechnologyTaif UniversityTaif21944Saudi Arabia Institute of Computing Kohat University of Science and TechnologyKohat26000Pakistan

Deep Learning(DL)techniques as a subfield of data science are getting overwhelming attention mainly because of their ability to understand the underlying pattern of data in making *** techniques require a considerable amount of data to efficiently train the DL ***,when the data size is larger,the DL models perform ***,it is not possible to have a considerable amount of data in different domains such as *** healthcare,it is impossible to have a substantial amount of data to solve medical problems using Artificial Intelligence,mainly due to ethical issues and the privacy of *** solve this problem of small dataset,different techniques of data augmentation are used that can increase the size of the training ***,these techniques only change the shape of the image and hence the classification model does not increase *** Adversarial Networks(GANs)are very powerful techniques to augment training data as new samples are *** technique helps the classification models to increase their *** this paper,we have investigated augmentation techniques in healthcare image *** objective of this research paper is to develop a novel augmentation technique that can increase the size of the training set,to enable deep learning techniques to achieve higher *** have compared the performance of the image classifiers using the standard augmentation technique and *** results demonstrate that GANs increase the training data,and eventually,the classifier achieves an accuracy of 90%compared to standard data augmentation techniques,which achieve an accuracy of up to 70%.Other advanced CNN models are also tested and have demonstrated that more deep architectures can achieve more than 98%accuracy for making classification on Oral Squamous Cell Carcinoma.

关键词： Data science deep learning data augmentation classification data manipulation

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Optoelectronic and thermoelectric properties of spinel chalcogenides HgLa_(2)X_(4)(X=S and Se):A first-principles study

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Journal of Rare Earths 2024年第10期42卷 1927-1936页

作者： Aparna Dixit Inas AAhmed Jisha Annie Abraham Zeinhom mel-Bahy mumtaz manzoor Sajad Ahmad Dar Ramesh Sharma Department of Basic Science and Humanities Pranveer Singh Institute of TechnologyKanpur209305UPIndia Department of Chemistry Faculty of ScienceKing Khalid UniversityAbha62224Saudi Arabia Department of Physics National Defence AcademyPune209305MaharashtraIndia Department of Chemistry Faculty of ScienceAl-Azhar UniversityNasr City.11884CairoEgyp Institute of Physics Slovak Academy of SciencesDubravska cesta 984507BratislavaSlovakia Department of Physics Motilal Vigyan Mahavidyalya CollegeBhopal462008India Department of Applied Science Feroze Gandhi Institute of Engineering and TechnologyRaebareli229001India

We investigated spinel chalcogenides HgLa_(2)(S/Se)_(4)by using density function theory,and scrutinized the structural,optical,electrical,mechanical and thermoelectric transport characteristics of HgLa_(2)(S/Se)_(4)spinel *** enthalpy of formation,energy of cohesion,and energy volume optimum plots were used to obtain the stability as well as the perfect ground state of these *** ductility of these materials was the best illustrated with the help of Poisson's and Pugh's *** band gap results were obtained using Trans and Blaha modified Becke-Johanson potential(TB-mBJ).Both the materials present semi-conducting nature with direct band gap equal to 1.449 and 0.892 eV respectively for HgLa_(2)S_(4)and HgLa_(2)Se_(4).Calculations were also made for optical characteristics with the values of dielectric function,absorption coefficient,optical conductivity,reflectivity,and refractive *** to the findings,both of these materials are suitable for infrared optoelectronic *** materials were found to have promising optoelectronic and thermoelectric applications after their optical properties and transport aspects were *** tiny levels of temperature conductivities,substantial am ounts of power conductivities,the figure of merit(more than unity),as well as Seebecs coefficients all point to the potential use of both the materials in thermoelectric power generators.

关键词： Density functional theory Direct band gap Optoelectronic Thermoelectric Semiconductors Power factor

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Prevelance of Bovine Cysticercosis in Egypt and the Cysticidal Effect of Two Extracts Obtained from Balanites aegyptiaca and moringa oleifera on mice model Affected with T. saginata Cysticerci

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Open Journal of Animal Sciences 2024年第2期14卷 39-55页

作者： Omnia m. Kandil Noha m. F. Hassan Doaa Sedky Hatem A. Shalaby Heba m. Ashry Nadia m. T. Abu el Ezz Sahar m. Kandeel mohamed S. Abdelfattah L. Ying Ebtesam m. Al-Olayan Parasitology and Animal Diseases Department Veterinary Research Institute National Research Centre Dokki Cairo Egypt Chemistry of Natural Compounds Department Pharmaceutical and Drugs Industries Research Institute National Research Centre Dokki Cairo Egypt Chemistry Department Faculty of Science Helwan University Cairo Egypt State Key Laboratory of Plateau Ecology and Agriculture Qinghai University Xining China College of Agriculture and Animal Husbandry Qinghai University Xining China Department of Zoology Collage of Science King Saud University Riyadh Saudi Arabia

The aim of the present study was to determine the prevalence of bovine cysticercosis in both cattle and buffloas, in Egypt and to assess the cysticidal efficacy of Balanites aegyptiaca fruits (B. aegyptiaca) and moringa oleifera seeds (m. oleifera) extracts in experimentally infected mice. The study detected the level of tumor necrosis factor (TNF-α) to monitor the immune and inflammatory responses of experimentally infected mice. Through meat inspection, a total number of 2125 male bovine, 2 to 5 years old, (1125 cattle and 1000 buffloes) were examined under the authority of Albsatine and Alwaraq official abattoirs in Cairo Governorate, Egypt covering the period extended from march 2022 to April 2023. The overall prevalence of the disease among bovine was 7.8% (6.31% of cattle and 9.5% of buffloes). Besides, B. aegyptiaca and m. oleifera extracts showed cysticidal activity in experimentally infected mice. A decrease in the numbers of cysticerci was found in all treated mice groups, and up to 88% reduction was achieved in the B. aegyptiaca-treated group;higher than that was recorded in both m. oleifera (72.23%) and albendazole-treated ones (80.56%). Postmortem findings proved that m. oleifera and B. aegyptiaca reduced cysticerci numbers comparable to a commercial anthelmintic. The study showed a significant decrease (P 0.001) in TNF-α levels after treatment with Balanites and moringa extracts, compared with the untreated control and the albendazole-treated groups.

关键词： Prevalence Balanites aegyptiaca moringa oleifera mice T. saginata Cysticerci

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Biochemical Liver Functions and molecular Identification of Fasciola hepatica from Experimentally Infected Rat model

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Open Journal of Animal Sciences 2024年第2期14卷 88-100页

作者： Omnia m. Kandil Emad B. Ata margarita P. Gabrashanska Hatem A. Shalaby Tamer H. Abd el-Aziz Noha m. F. Hassan Soad m. Nasr mohamed A. Helal Ebtesam m. Al-Olayan Department of Parasitology & Animal Diseases Veterinary Research Institute National Research Centre Giza Egypt Institute of Experimental morphology Pathology and Anthropology with Museum Bulgarian Academy of Sciences Sofia Bulgaria Department of Zoology Collage of Science King Saud University Riyadh Saudi Arabia

The current study was performed to evaluate the liver function status as well as molecular characterization of the recovered worms in rats experimentally infected with F. hepatica. Sixteen male Wister rats aged 30 days were randomly allocated into two groups (n = 8). The first group was infected orally with 15 viable encysted metacercaria of F. hepatica per animal. The other group was kept non-infected (control group). At zero time (before infection), the 2nd, 4th, 6th, 8th, 10th, 12th and 14th weeks post-infection (WPI), blood and serum samples were collected via puncture of retro-orbital plexus of veins from each rat. Serum enzyme level (AST and ALT) and total protein were measured, and the serum protein profile was carried out using agarose gel electrophoresis. During the period of the experiment, serum ALT and AST activities and serum total globulins significantly increased while serum total proteins and albumin markedly decreased in the infected group. On the 14th WPI, the data of the electropherogram showed that globulin fractions (α1-, β- and γ-globulin) levels were significantly increased while α2-globulin was markedly decreased in the infected group. The molecular analysis confirmed the amplification of the ITS1, ITS2 and NDI genes of F. hepatica recovered from the infected liver of rats with amplicon sizes of 630, 510 and 560 bp, respectively. Sequencing of the amplified ITS gene resulted in the determination of 3 strains (PP108836, PP108837, and PP108838). Also, analysis of the ITS2 gene resulted in obtaining 3 isolates under the accession numbers (PP109065, PP109066, and PP109067). In conclusion, fasciolosis in the rat model is suitable for routine experimental infections and caused a pronounced liver dysfunction with discharging of the Fasciola eggs in the faeces and the development of adult stages in the bile ducts. Furthermore, molecular techniques are a sensitive

关键词： Fasciola hepatica Liver Functions Serum Enzymes Serum Protein electrophoresis molecular Characterization

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An Improved DeepNN with Feature Ranking for Covid-19 Detection

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Computers, materials & Continua 2022年第5期71卷 2249-2269页

作者： Noha E.el-Attar Sahar F.Sabbeh Heba Fasihuddin wael A.Awad Faculty of Computers and Artificial Intelligence Benha UniversityBenha13518Egypt University of Jeddah College of Computer Science and EngineeringJeddah21493Kingdom of Saudi Arabia Faculty of Computers and Information Damietta UniversityDamietta34711Egypt

The outbreak of Covid-19 has taken the lives of many patients so *** symptoms of COVID-19 include muscle pains,loss of taste and smell,coughs,fever,and sore throat,which can lead to severe cases of breathing difficulties,organ failure,and ***,the early detection of the virus is very ***-19 can be detected using clinical tests,making us need to know the most important symptoms/features that can enhance the decision *** this work,we propose a modified multilayer perceptron(mLP)with feature selection(mLPFS)to predict the positive COVID-19 cases based on symptoms and features from patients’electronic medical records(EmR).mLPFS model includes a layer that identifies the most informative symptoms to minimize the number of symptoms base on their relative *** the model with only the highest informative symptoms can fasten the learning process and increase *** were conducted using three different COVID-19 datasets and eight different models,including the proposed *** show that mLPFS achieves the best feature reduction across all datasets compared to all other experimented ***,it outperforms the other models in classification results as well as time.

关键词： Covid-19 feature selection deep learning

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Numerical modeling and Technico-Economic Analysis of a Hybrid Energy Production System for Self-Consumption: Case of Rural Area in the Comoros

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Journal of Power and Energy Engineering 2024年第5期12卷 24-59页

作者： Fahad maoulida mohamed Aboudou Kassim Rabah Djedjig Ahmed Ihlal mohammed el Ganaoui LERmAB Laboratory of Studies and Research on Wood Material IUT of Longwy University of Lorraine Cosnes-et-Romain Longwy France LEmA Energy and Applied Mechanics Laboratory Faculty of Sciences and Techniques University of Comoros Moroni Comoros IREmIS Institute University of Mayotte Mayotte France LmER Laboratory of Materials and Renewable Faculty of Sciences University Ibn Zohr BP Agadir Morocco

This study aims to provide electricity to a remote village in the Union of Comoros that has been affected by energy problems for over 40 years. The study uses a 50 kW diesel generator, a 10 kW wind turbine, 1500 kW photovoltaic solar panels, a converter, and storage batteries as the proposed sources. The main objective of this study is to conduct a detailed analysis and optimization of a hybrid diesel and renewable energy system to meet the electricity demand of a remote area village of 800 to 1500 inhabitants located in the north of Ngazidja Island in Comoros. The study uses the Hybrid Optimization model for electric Renewable (HOmER) Pro to conduct simulations and optimize the analysis using meteorological data from Comoros. The results show that hybrid combination is more profitable in terms of margin on economic cost with a less expensive investment. With a diesel cost of $1/L, an average wind speed of 5.09 m/s and a solar irradiation value of 6.14 kWh/m2/day, the system works well with a proportion of renewable energy production of 99.44% with an emission quantity of 1311.407 kg/year. 99.2% of the production comes from renewable sources with an estimated energy surplus of 2,125,344 kWh/year with the cost of electricity (COE) estimated at $0.18/kWh, presenting a cost-effective alternative compared to current market rates. These results present better optimization of the used hybrid energy system, satisfying energy demand and reducing the environmental impact.

关键词： Hybrid System Rural Area electrification Comoros Techno-Economic Analysis PV-Wind-Diesel-Battery meteorological Data HOmER Energy Pro

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Bird species present in urban parks are more colorful than urban avoiders:A test in the Argentinian Pampas

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Avian Research 2024年第1期15卷 22-26页

作者： Lucas m.Leveau Departamento de Ecología Genetica y EvolucionFacultad de Ciencias Exactas y NaturalesUniversidad de Buenos Aires-IEGEBA(CONICET-UBA)Intendente Güiraldes 2160Ciudad UniversitariaC1428EGABuenos AiresArgentina

Bird plumage color has been assessed as a possible trait driving the presence of bird species in urban *** some species can see the ultraviolet(UV) spectrum,the mentioned studies did not take into account UV reflectance when characterizing bird *** study aimed to use a recent database of the colorfulness in passerines that incorporated the UV spectrum to compare bird colorfulness and other traits between urban parks and rural areas in Central-East *** in urban parks were surveyed in 51 parks in 6 cities during breeding and non-breeding seasons.A list of Passeriformes species from parks was created,and a list of urban avoider species was created from the *** traits were body mass,clutch size,migratory status,nesting site,diet and habitat breadth,and plumage colorfulness.A total of 85 species were detected in the regional pool,of which 30 species were detected in urban *** species present in urban parks were more colorful than bird species only present in rural *** addition,bird presence in urban parks was positively related to their regional frequency and diet ***,urban presence was related to nesting on trees and buildings,whereas species not present in urban parks nested on the *** results obtained showed that bird color is significantly associated with presence of bird species in urban parks.

关键词： Avian Filter Phenotype Selection Ultraviolet

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Complement-dependent neuroinflammation in spinal cord injury:from pathology to therapeutic implications

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Neural Regeneration Research 2025年第5期20卷 1324-1335页

作者： Hassan Saad Bachar el Baba Ali Tfaily Firas Kobeissy Juanmarco Gutierrez Gonzalez Daniel Refai Gerald R.Rodts Christian mustroph David Gimbel Jonathan Grossberg Daniel L.Barrow matthew F.Gary Ali m.Alawieh Department of Neurosurgery Emory University School of MedicineAtlantaGAUSA Department of Neurology Yale UniversityNew HavenCTUSA Center for Neurotrauma Multiomics&Biomarkers(CNMB)Morehouse School of MedicineAtlantaGAUSA

Spinal cord injury remains a major cause of disability in young adults,and beyond acute decompression and rehabilitation,there are no pharmacological treatments to limit the progression of injury and optimize recovery in this *** the thorough investigation of the complement system in triggering and propagating cerebral neuroinflammation,a similar role for complement in spinal neuroinflammation is a focus of ongoing *** this work,we survey the current literature investigating the role of complement in spinal cord injury including the sources of complement proteins,triggers of complement activation,and role of effector functions in the *** study relevant data demonstrating the different triggers of complement activation after spinal cord injury including direct binding to cellular debris,and or activation via antibody binding to damage-associated molecular *** effector functions of complement have been implicated in spinal cord injury,and we critically evaluate recent studies on the dual role of complement anaphylatoxins in spinal cord injury while emphasizing the lack of pathophysiological understanding of the role of opsonins in spinal cord *** this pathophysiological review,we systematically review the different translational approaches used in preclinical models of spinal cord injury and discuss the challenges for future translation into human *** review emphasizes the need for future studies to dissect the roles of different complement pathways in the pathology of spinal cord injury,to evaluate the phases of involvement of opsonins and anaphylatoxins,and to study the role of complement in white matter degeneration and regeneration using translational strategies to supplement genetic models.

关键词： complement neuroinflammation neuroplasticity regeneration spinal cord injury targeted therapy

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