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Soil CO_2 and N_2O Emissions in Maize Growing Season Under Different Fertilizer Regimes in an Upland Red Soil Region of South China

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Journal of Integrative Agriculture 2014年第3期13卷 604-614页

作者： ZHANG Xu-bo wu lian-hai SUN Nan DING Xue-shan LI Jian-wei WANG Bo-ren LI Dong-chu Key Laboratory of Crop Nutrition and Fertilization Ministry of Agriculture/Institute of Agricultural Resources and Regional Planning Chinese Academy of Agricultural Sciences Sustainable Soils and Grassland Systems Department Rothamsted Research Department of Botany and Microbiology University of Oklahoma

Upland red soils have been identified as major CO2 and N2O sources induced by human activities such as fertilization. To monitor characteristics of soil surface CO2 and N2O fluxes in cropland ecosystems after continuous fertilizer applications over decades and to separate the respective contributions of root and heterotrophic respiration to the total soil CO2 and N2O fluxes, the measurements of soil surface CO2 and N2O fluxes throughout the maize growing season in 2009 were carried out based on a fertilization experiment （from 1990） through of the maize （Zea mays L.） growing season in red soil in southern China. Five fertilization treatments were chosen from the experiment for study： zero-fertilizer application （CK）, nitrogen-phosphorus- potassium （NPK） fertilizer application only, pig manure （M）, NPK plus pig manure （NPKM） and NPK with straw （NPKS）. Six chambers were installed in each plot. Three of them are in the inter-row soil （NR） and the others are in the soil within the row （R）. Each fertilizer treatment received the same amount of N （300 kg ha-1 yr-1）. Results showed that cumulative soil CO2 fluxes in NR or R were both following the order： NPKS〉M, NPKM〉NPK〉CK. The contributions of root respiration to soil CO2 fluxes was 40, 44, 50, 47 and 35% in CK, NPK, NPKM, M and NPKS treatments, respectively, with the mean value of 43%. Cumulative soil N2O fluxes in NR or R were both following the order： NPKS, NPKM〉M〉NPK〉CK, and soil N2O fluxes in R were 18, 20 and 30% higher than that in NR in NPKM, M and NPKS treatments, respectively, but with no difference between NR and R in NPK treatment. Furthermore, combine with soil temperature at -5 cm depth and soil moisWxe （0-20 cm） together could explain 55-70% and 42-59% of soil CO2 and N2O emissions with root interference and 62- 78% and 44-63% of that without root interference, respectively. In addition, soil CO2 and N2O flUXeS per unit yield in NPKM （0.55 and 0.10 kg C t^-1） and M （0.65 and 0.13 g N t^-1） treatments were

关键词： greenhouse gas emissions carbon dioxide nitrous oxide manure mineral fertilizers straw return South China

Prediction of cell-cell communication patierns of dorsal root ganglion cells:single-cell RNA sequencing data analysis

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Neural Regeneration Research 2024年第6期19卷 1367-1374页

作者： Yanna lian Cheng wu Li Liu Xiangyao Li National Health Commission and Chinese Academy of Medical Sciences Key Laboratory of Medical Neurobiology Ministry of Education Frontier Science Center for Brain Research and Brain-Machine IntegrationSchool of Brain Science and Brain MedicineZhejiang UniversityHangzhouZhejiang ProvinceChina International Institutes of Medicine the Fourth Affiliated Hospital of Zhejiang University School of MedicineYiwuZhejiang ProvinceChina Zhejiang University-University of Edinburgh Institute Zhejiang University School of MedicineZhejiang UniversityHainingZhejiang ProvinceChina Biomedical Sciences College of Medicine and Veterinary MedicineThe University of EdinburghEdinburghUK Core Facilities of the School of Medicine Zhejiang UniversityHangzhouZhejiang ProvinceChina

Dorsal root ganglion neurons transmit peripheral somatic information to the central nervous system,and dorsal root ganglion neuron excitability affects pain *** root ganglion stimulation is a new approach for managing pain *** of the cell-cell communication among dorsal root ganglion cells may help in the development of new pain and itch management ***,we used the single-cell RNA-sequencing(scRNA-seq)database to investigate intercellular communication networks among dorsal root ganglion *** collected scRNA-seq data from six samples from three studies,yielding data on a total of 17,766 *** on genetic profiles,we identified satellite glial cells,Schwann cells,neurons,vascular endothelial cells,immune cells,fibroblasts,and vascular smooth muscle *** analysis revealed that eight types of dorsal root ganglion neurons mediated proprioceptive,itch,touch,mechanical,heat,and cold ***,we predicted several distinct forms of intercellular communication among dorsal root ganglion cells,including cell-cell contact,secreted signals,extracellular matrix,and neurotransmitter-mediated *** data mining predicted that Mrgpra3-positive neurons robustly express the genes encoding the adenosine Adora2b(A2B)receptor and glial cell line-derived neurotrophic factor family receptor alpha 1(GFRα-1).Our immunohistochemistry results confirmed the coexpression of the A2B receptor and GFRα-*** injection of the A2B receptor antagonist PSB-603 effectively prevented histamine-induced scratching behaviour in a dose-dependent *** results demonstrate the involvement of the A2B receptor in the modulation of itch ***,our findings provide insight into dorsal root ganglion cell-cell communication patterns and *** results should contribute to the development of new strategies for the regulation of dorsal root ganglion excitability.

关键词： cell-cell communications CellChat dorsal root ganglion scRNA-Seq database

Nomogram to predict severe retinopathy of prematurity in Southeast China

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International Journal of Ophthalmology(English edition) 2024年第2期17卷 282-288页

作者： Dan Liu Xing-Yong Li Hong-wu He Ka-Lu Jin Ling-Xia Zhang Yang Zhou Zhi-Min Zhu Chen-Chen Jiang hai-Jian wu Sui-lian Zheng Department of Ophthalmology the Second Affiliated Hospital and Yuying Children’s Hospital of Wenzhou Medical UniversityWenzhou 325027Zhejiang ProvinceChina Eye Hospital and School of Ophthalmology and Optometry Wenzhou Medical UniversityWenzhou 325027Zhejiang ProvinceChina Taizhou Optometry Hospital Taizhou 318001Zhejiang ProvinceChina Department of Ophthalmology Jiaxing Maternity and Child Health Care HospitalJiaxing 314009Zhejiang ProvinceChina Department of Ophthalmology Taizhou Women and Children’s Hospital of Wenzhou Medical UniversityTaizhou 318001Zhejiang ProvinceChina Clinical Medical Research Center the Second Affiliated Hospital and Yuying Children’s Hospital of Wenzhou Medical UniversityWenzhou 325027Zhejiang ProvinceChina Department of Ophthalmology Taizhou Municipal HospitalTaizhou 318099Zhejiang ProvinceChina

AIM:To define the predictive factors of severe retinopathy of prematurity(ROP)and develop a nomogram for predicting severe ROP in southeast ***:Totally 554 infants diagnosed with ROP hospitalized in the Second Affiliated Hospital and Yuying Children’s Hospital of Wenzhou Medical University and hospitalized in Taizhou Women and Children’s Hospital were *** data and 43 candidate predictive factors of ROP infants were collected *** regression model was used to identify predictive factors of severe ROP and to propose a nomogram for individual risk prediction,which was compared with WINROP model and Digirop-Birth ***:Infants from the Second Affiliated Hospital and Yuying Children’s Hospital of Wenzhou Medical University(n=478)were randomly allocated into training(n=402)and internal validation group(n=76).Infants from Taizhou Women and Children’s Hospital were set as external validation group(n=76).Severe ROP were found in 52 of 402 infants,12 of 76 infants,and 7 of 76 infants in training group,internal validation group,and external validation group,*** weight[odds ratio(OR),0.997;95%confidence interval(CI),0.996-0.999;P<0.001],multiple births(OR,1.885;95%CI,1.013-3.506;P=0.045),and non-invasive ventilation(OR,0.288;95%CI,0.146-0.570;P<0.001)were identified as predictive factors for the prediction of severe ROP,by univariate analysis and multivariate *** predicting severe ROP based on the internal validation group,the areas under receiver operating characteristic curve(AUC)was 78.1(95%CI,64.2-92.0)for the nomogram,32.9(95%CI,15.3-50.5)for WINROP model,70.2(95%CI,55.8-84.6)for Digirop-Birth *** external validation group,AUC of the nomogram was also higher than that of WINROP model and Digirop-Birth model(80.2 versus 51.1 and 63.4).The decision curve analysis of the nomogram demonstrated better clinical efficacy than that of WINROP model and Digirop-Birth *** calibration curves demonst

关键词： retinopathy of prematurity nomogram predictive factor birth weight multiple births non-invasive ventilation

Network Embedding Algorithm for Vulnerability Assessment of Power Transmission Lines Using Integrated Structure and Attribute Information

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CSEE Journal of Power and Energy Systems 2024年第1期10卷 351-360页

作者： Xianglong lian Tong Qian Zepeng Li Xingyu Chen Wenhu Tang Q.H.wu School of Electric Power Engineering South China University of TechnologyGuangzhou 510640China

In power systems,failures of vulnerable lines can trigger large-scale cascading failures,and vulnerability assessment is dedicated to locating these lines and reducing the risks of such *** on a structure and attribute network embedding(SANE)algorithm,a novel quantitative vulnerability analysis method is proposed to identify vulnerable lines in this ***,a two-layered random walk network with topological and electrical properties of transmission lines is ***,based on the weighted degree of nodes in the two-layered network,the inter-layer and intra-layer walking transition probabilities are developed to obtain walk ***,a Word2Vec algorithm is applied to obtain lowdimension vectors representing transmission lines,according to obtained walk sequences for calculating the vulnerability index of transmissions ***,the proposed method is compared with three widely used methods in two test *** show the network embedding based method is superior to those comparison methods and can provide guidance for identifying vulnerable lines.

关键词： Network embedding random walk transmission lines vulnerability assessment

Benchmarking Algorithms for Gene Set Scoring of Single-cell ATAC-seq Data

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Genomics, Proteomics & Bioinformatics 2024年第2期22卷 27-42页

作者： Xi Wang Qiwei lian Haoyu Dong Shuo Xu Yaru Su Xiaohui wu Pasteurien College Suzhou Medical College of Soochow UniversitySoochow UniversitySuzhou 215000China Department of Automation Xiamen UniversityXiamen 361005China College of Mathematics and Computer Science Fuzhou UniversityFuzhou 350116China

Gene set scoring(GSS)has been routinely conducted for gene expression analysis of bulk or single-cell RNA sequencing(RNA-seq)data,which helps to decipher single-cell heterogeneity and cell type-specific variability by incorporating prior knowledge from functional gene ***-cell assay for transposase accessible chromatin using sequencing(scATAC-seq)is a powerful technique for interrogating single-cell chromatin-based gene regulation,and genes or gene sets with dynamic regulatory potentials can be regarded as cell type-specific markers as if in single-cell RNA-seq(scRNA-seq).However,there are few GSS tools specifically designed for scATAC-seq,and the applicability and performance of RNA-seq GSS tools on scATAC-seq data remain to be ***,we systematically benchmarked ten GSS tools,including four bulk RNA-seq tools,five scRNA-seq tools,and one scATAC-seq ***,using matched scATAC-seq and scRNA-seq datasets,we found that the performance of GSS tools on scATAC-seq data was comparable to that on scRNA-seq,suggesting their applicability to ***,the performance of different GSS tools was extensively evaluated using up to ten scATAC-seq ***,we evaluated the impact of gene activity conversion,dropout imputation,and gene set collections on the results of *** show that dropout imputation can significantly promote the performance of almost all GSS tools,while the impact of gene activity conversion methods or gene set collections on GSS performance is more dependent on GSS tools or ***,we provided practical guidelines for choosing appropriate preprocessing methods and GSS tools in different application scenarios.

关键词： Single-cell ATAC-seq Gene set scoring Pathway analysis Single-cell RNA-seq Benchmark

Expanding the horizons of targeted protein degradation:A non-small molecule perspective

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Acta Pharmaceutica Sinica B 2024年第6期14卷 2402-2427页

作者： Xiaowei Huang Fengbo wu Jing Ye lian Wang Xiaoyun Wang Xiang Li Gu He Department of Pharmacy and Department of Dermatology&Venerology West China HospitalSichuan UniversityChengdu 610041China Department of Urology West China HospitalSichuan UniversityChengdu 610041China Laboratory of Dermatology Clinical Institute of Inflammation and ImmunologyFrontiers Science Center for Disease-Related Molecular Network and State Key Laboratory of BiotherapyWest China HospitalSichuan UniversityChengdu 610041China

Targeted protein degradation(TPD)represented by proteolysis targeting chimeras(PROTACs)marks a significant stride in drug discovery.A plethora of innovative technologies inspired by PROTAC have not only revolutionized the landscape of TPD but have the potential to unlock functionalities beyond ***-small-molecule-based approaches play an irreplaceable role in this field.A wide variety of agents spanning a broad chemical spectrum,including peptides,nucleic acids,antibodies,and even vaccines,which not only prove instrumental in overcoming the constraints of conventional small molecule entities but also provided rapidly renewing *** we summarize the burgeoning non-small molecule technological platforms inspired by PROTACs,including three major trajectories,to provide insights for the design strategies based on novel paradigms.

关键词： Targeted protein degradation Proteolysis targeting chimera Endocytosis Autophagy Proximity-inducing modality Post-translational modification

Primary Amebic Meningoencephalitis Caused by Naegleria fowleri in China: A Case Report

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Infectious Microbes & Diseases 2024年第1期6卷 43-45页

作者： Qihuan wu Chensong Chen Jie Li Xiang lian Department of Infectious Diseases The Affiliated Xiangshan Hospital of Wenzhou Medical UniversityNingboChina Department of Critical Care Medicine The Affiliated Xiangshan Hospital of Wenzhou Medical UniversityNingboChina Laboratory Medicine The Affiliated Xiangshan Hospital of Wenzhou Medical UniversityNingboChina

Naegleria fowleri is a thermophilic,free-living ameba that is commonly known as the“brain-eating ameba.”This parasite invades the central nervous system and causes an acute fulminant infection,which results in a fatal form of primary amebic meningoencephalitis(PAM).Here,we report a case of PAM by an unexpected transmission ***,the patient deteriorated swiftly and passed away subsequent to diagnosis,despite our exhaustive ***,we compiled a summary of 11 cases of PAM survivors who have all been treated with amphotericin,rifampicin and *** this regimen,miltefosine was also used successfully to treat PAM in an *** precise understanding of the survival rate and contributing factors can be established with further validation on ad-ditional cases.

关键词： Naegleria fowleri primary amebic meningoencephalitis metagenomic next-generation sequencing

强排水复合型动力固结法在铁路路基地基加固中的应用

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铁道标准设计 2013年第3期33卷 26-28,42页

作者：王剑吴连海铁道第三勘察设计院集团有限公司天津300142

强夯法在处理低饱和度的软弱土地基时是一种比较经济、快捷的加固地基方法,但当地下水位埋藏较浅,或地基土处于高饱和度时该法受到了限制。通过真空轻型井点降水的强排水措施,降低地下水位,使地基土体部分得到固结沉降的同时再加以强夯... 详细信息

强夯法在处理低饱和度的软弱土地基时是一种比较经济、快捷的加固地基方法,但当地下水位埋藏较浅,或地基土处于高饱和度时该法受到了限制。通过真空轻型井点降水的强排水措施,降低地下水位,使地基土体部分得到固结沉降的同时再加以强夯措施,即强排水复合型动力固结法可以突破这种限制。以邯黄铁路一工点为例,阐述该法加固地基的机理,并详细介绍其设计与施工。

关键词：铁路路基强排水复合型动力固结法加固地基机理设计施工

Evolution of Cenozoic sedimentary architecture in Central and Southern South China Sea basins

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Journal of Palaeogeography 2024年第1期13卷 35-53页

作者： wu Tang Xiao-Jun Xie Yi-Bo Wang lian-Qiao Xiong Jia Guo Xin Li China National Offshore Oil Corporation Research Institute Beijing 100028China

The Central and Southern South China Sea(CSSCS) has a complex tectonic dynamic background and abundant oil and gas resources, which has always been a hot topic of academic and industrial ***, systematic analyses are still lacking regarding its sediment filling structure and evolution, mostly due to limited borehole penetration and poor quality of seismic reflection data for deeply buried sequences. No consensus has been reached yet on the sedimentary infilling processes, which impeded the reconstruction of the palaeogeography of Southeast Asia and the oil-and-gas exploration undertakings. Here, we illustrate the Cenozoic sedimentary evolution of the CSSCS region by synthesizing relevant data from previous literature and our own observations and displaying the evolution of depositional systems in sequential reconstructions. Besides, the controlling factors of preferred sedimentary scenarios in the CSSCS incorporate the latest interpretations of the spreading of South China Sea(SCS) as well as the demise of the hypothetical Proto-South China Sea(PSCS). The results show that there are three types of sedimentary basins in the CSSCS(foreland,strike-slip, and rift basins) with different sedimentary filling structures. The foreland basins formed a depositional pattern of ‘transition from deep water to shallow water environments', dominated by deep-water depositional systems which were formed before the Early Oligocene with submarine fans developed. Later,the foreland basins were gradually dominated by shallow-water depositional systems with deltas and shallow marine facies. The strike-slip basins showed the depositional architecture of ‘transition from lake to marine environments', i.e. the basins were dominated by lacustrine deposits during the Eocene and evolved into the marine depositional environment since Oligocene with delta developed in the western part of the basin. The depositional evolution of rift basins illustrated the characteristics of 'transiti

关键词： Central and Southern South China Sea Sedimentary filling Main controlling factors Proto-South China Sea South China Sea