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Analysis of tandem repeats in the genome of chinese shrimp Fenneropenaeus chinensis

chinese Science Bulletin 2005年第14期50卷 1462-1469页

作者： KONG Jie1 & GAO Huan2.3.1. Key Laboratory for Sustainable Utilization of Marine Fisheries Re- sources, Ministry of Agriculture, Yellow Sea Fisheris Research Insti- tute, chinese academy of Fishery Sciences, Qingdao 2.6071,{2. 2. institute of Oceanology, chinese academy of Sciences, Qingdao 2.6071,{2. 3. The Graduate School of the chinese academy of Sciences, {13. 10003.,{2. Key Laboratory for Sustainable Utilization of Marine Fisheries Resources Ministry of Agriculture Yellow Sea Fisheris Research Institute Chinese Academy of Fishery Sciences Qingdao China institute of Oceanology Chinese Academy of Sciences Qingdao China The Graduate School of the chinese academy of Sciences Beijing China

Through random sequencing, we found a total of 884000 base-pairs (bp) of random genomic sequences in the genome of chinese shrimp (Fenneropenaeus chinensis). Using bio-soft Tandem Repeat Finder (TRF) software, 2.59 tandem repeats were found, in which there were 1714 mi- crosatellites and 445 minisatellites, accounting for 79.4% and 2..6% of repeat sequences, respectively. The cumulative length of repeat sequences was found to be 116685 bp, ac- counting for 13.2. of the total DNA sequence; the cumula- tive length of microsatellites occupied 9.78% of the total DNA sequence, and that of minisatellites occupied 3.42.. In decreasing order, the 2. most abundant repeat sequence classes were as follows: AT (557), AC (471), AG (2.4), AAT (92., A (56), AAG (2.), ATC (2.), ATAG (2.), AGG (18), ACT (15), C (11), AAC (11), ACAT (11), CAGA (10), AGAA (9), AGGG (7), CAAA (7), CGCA (6), ATAA (6), AGAGAA (6). Dinucleotide repeats, not only in the aspect of the number, but also in cumulative length, were the preponderant repeat type. There were few classes and low copy numbers of repeat units of the pentanucleotide repeat type, which included only three classes: AGAGA, GAGGC and AAAGA. The classes and copy numbers of heptanucleotide, eleven-nucleotide and thirteen-nucleotide primer-number-composed repeats were distinctly less than that of repeat types beside them.

关键词：虾遗传特性遗传基因 DNA

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Chronology of Holocene lacustrine sediments in Co Ngoin, central Tibetan Plateau

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Science china Earth Sciences 2006年第9期49卷 991-1001页

作者： WU Yanhong1, WANG Sumin1& HOU Xinhua1,3.1. Key Laboratory of Lake Sedimentation and Environment, Nanjing institute of Geography and Limnology, chinese {2. of Sciences, Nanjing 2.0008, china 2. institute of Tibetan Plateau Research, chinese {2. of Sciences, beijing 10085, china 3. Graduate University of chinese {2. of Sciences, beijing 10003., china 1. Key Laboratory of Lake Sedimentation and Environment Nanjing Institute of Geography and Limnology Chinese Academy of Sciences Nanjing 210008 China 2. institute of Tibetan Plateau Research Chinese Academy of Sciences Beijing 10085 China 3. Graduate University of chinese academy of Sciences Beijing 100039 China

Chronology is the basis for using lacustrine sediments to reconstruct the history of en-vironmental change. Radioactive-nuclides such as 14C, 2.0Pb and 13.Cs dating are mainly used to establish the chronology for recent several ten thousand years. Because of being mixed with “dead carbon”, the measured 14C age is always older than the actual age which is recognized as “reservoir effect”. Cs is a kind of active metal element, and easy to migrate vertically in the sediment that leads to the error of the time marker. 2.0Pb dating should make sure to select CIC model or CRS model. On the Tibetan Plateau, most of the lakes are alkaline closed lake where Cs is more moveable in the sediment and the reservoir effect caused by “dead carbon” on 14C dating is stronger. Based on the analysis on results of 14C, 2.0Pb and 13.Cs of the lacustrine sediments from Co Ngoin, central Tibetan Plateau, we use the simple regression method to re-calculate the 14C calendar ages, and establish the time sequence for cores CE-1 and CE-2.with result of 2.0Pb CRS model for the upper 3. cm and re-calculated 14C calendar age for sediments bellow 3. cm. Since 1400 cal. a BP, sedimentation inter-rupted for more than 1000 years. According to this time sequence, variations of environmental proxies confidently reflect the major climatic events in Holocene.

关键词： 14C, 2.0Pb and 13.Cs, chronology, lacustrine sediments, climatic event, Co Ngoin, central Tibetan Plateau.

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Inertial theory of the mean Hadley circulation under the condition of nonstatic equilibrium

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Science china Earth Sciences 2006年第5期49卷 546-553页

作者： CHAO Jiping1 & LIU Fei2.3.1. National Marine Environmental Forecasting Center, beijing 100081, china 2. Key Laboratory Regional Climate-Environment for Temperate East Asia, {2. of Atmospheric Physics, chinese academy of Sciences, beijing 10002., china 3. Graduate University of chinese academy of Sciences, beijing 100049, china 1. National Marine Environmental Forecasting Center Beijing 100081 China 2. Key Laboratory Regional Climate-Environment for Temperate East Asia Institute of Atmospheric Physics Chinese Academy of Sciences Beijing 100029 China 3. Graduate University of chinese academy of Sciences Beijing 100049 China

Tropical atmosphere is divided into two layers, the layer near the ground is the planet boundary layer, where the motion is linear, if the radiation equilibrium temperature is given at the top of the boundary layer, the vertical motion there can be obtained. It is the non-viscous ideal atmos- pheric layer above the boundary one, where the motion is nonlinear. After getting the conservation laws of angular momentum, potential temperature and potential vortex, the inertial theory of the Hadley circulation driven by the vertical motion of the boundary layer is established, followed by sev- eral examples of its application.

关键词： Hadley circulation, inertial theory, conservation laws of angular momentum, potential temperature and potential vortex.

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Cloning and expression of putative ethylene receptor genes in soybean plant

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Progress in Natural Science:Materials International 2007年第10期17卷 1152-1160页

作者： Xie Zongming1,2.3. Lei Gang1,2. Wuriyanghan Hada1,2. Tian Aiguo1, Zhang Jinsong1 and Chen Shouyi1(1. National Key Laboratory of Plant Genomics, {3. of Genetics and Developmental Biology, chinese {2. of Sciences, beijing 100101, china 2. Graduate School of chinese {2. of Sciences, beijing 10003., china 3. Xinjiang {2. of Agricultural and Reclamation Science, Shihezi 83.0}00, china) National Key Laboratory of Plant Genomics Institute of Genetics and Developmental Biology Chinese Academy of Sciences Beijing 100101 China Graduate School of chinese academy of Sciences Beijing 100039 China Xinjiang academy of Agricultural and Reclamation Science Shihezi 832000 China

Ethylene plays important roles in plant growth, development, and stress responses, and ethylene receptors have been identified and studied extensively in various plant species. Here we report the cloning of four ethylene receptor genes from soybean, i.e. GmETR1, GmERS1, GmETR2.and GmEIN4. Construction of the phylogenic tree showed that GmETR1 and GmERS1 belong to subfamily I whereas GmETR2.and GmEIN4 belong to subfamily II. The four ethylene receptor genes showed different tissue-specific expression patterns in roots, stems, leaves, cotyledons, flowers, pods and seeds of soybean. These genes were differentially regulated by various abiotic stresses and plant hormones. The possible roles of the four genes in soybean plant were also discussed.

关键词： abiotic stress expression analysis ethylene receptor plant hormone soybean.

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Geomorphologic evidence of phased uplift of the northeastern Qinghai-Tibet Plateau since 14 million years ago

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Science china Earth Sciences 2004年第9期47卷 822-833页

作者： LU Huayu1, WANG Xiaoyong1, AN Zhisheng1, MIAO Xiaodong1, ZHU Rixiang3. MA Haizhou2. LI Zhen4, TAN Hongbing2.& WANG Xianyan1 1. State Key Laboratory of Loess and Quaternary geology, {3. of Earth Environment, {2. academy of Sciences, Xi’an 710075 china 2. Qinghai {3. of Salt Lakes, {2. academy of Sciences. Xining 810008, china 3. {3. of geology and Geophysics, {2. academy of Sciences, beijing 10002., china 4. Department of Geography, Qinghai Normal University, Xining 810008, china chinese Acad Sci Inst Earth Environm State Key Lab Loess & Quaternary Geol Xian 710075 Peoples R China chinese Acad Sci Qinghai Inst Salt Lakes Xining 810008 Peoples R China chinese Acad Sci Inst Geol & Geophys Beijing 100029 Peoples R China Qinghai Normal Univ Dept Geog Xining 810008 Peoples R China

A typical sequence of fluvial terraces and aeolian deposits overlying these ter- races were multidisciplinary investigated. New evidences for uplift process of the northeastern Qinghai-Tibetan Plateau in the past 14 million years were obtained. At least 11 river terraces along Huangshui, the first-class tributary of Yellow River, at the Xining-Huzhu region are identi- fied. While the first one (T1) is classified as an accumulation terrace, the others are all basement river terraces, which consist of the Tertiary sandstone and siltstone bedrock, fluvial gravel and pebbles and the overlying aeolian loess-Red Clay deposit. Samples from the aeolian deposits were examined for paleomagnetic stratigraphic reconstruction (103. samples), luminescence dating (16 samples), magnetic susceptibility and grain-size distribution (more than 4000 sam- ples). The luminescence dating and stratigraphic correlation suggest that terraces of Tll, T10, T8, T7, T3. T2. T1 were formed at 14, 11.3. 1.55, 1.2. 0.15, 0.07 and 0.01 million years ago, re- spectively. Sedimentological analysis and geomorphological observation indicate that formation and evolution of these terraces were mainly driven by tectonic uplift. Therefore, the terrace se- quence provides an ideal geological record, of the uplift process of the northeastern during the past 14 million years, and the timings of the terraces formation are regarded as the timings of tectonic uplift. The significant uplifting events took place at 14, 11.3. 1.2.and 0.15 mil- lion years ago, respectively. The fluvial incision at the Xining-Huzhu region is less than 100 m during a period of ~12.million years in the Miocene era (between the Tll and T9), while the Huangshui River had incised 43.0}m during the past 1.2.million years (from T7 to the present floodplain). The river incision process clearly demonstrates that accelerated rising of the north- eastern Qinghai-Tibet Plateau during the late Cenozoic, and provides new evidence of previous thoughts

关键词： river terrace, tectonic uplift, loess-Red Clay, the past 14 million years, northeastern Qinghai-Tibet Plateau.

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Comparison of eastern paleo-Tethyan ophiolites and its geodynamic significance--Evidence from Dur'ngoi ophiolite

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Science china Earth Sciences 2004年第4期47卷 378-384页

作者： CHEN Liang1,2. SUN Yong1,2. PEI Xianzhi2. Feng Tao2.& Zhang Guowei2.1. Open Laboratory of Continental Dynamics, Ministry of Education, Northwest University, Xi抋n 710069, china 2. institute of {2. and Geophysics, chinese academy of Sciences, beijing 10002., china Open Laboratory of Continental Dynamics Ministry of Education Northwest University Xi’an 710069 China institute of geology and Geophysics Chinese Academy of Sciences Beijing 100029 China

Nd-Pb isotopic geochemistry of metabasalt from Dur抧goi ophiolite, Qinghai Prov-ince, NW china reveals the presence of DMM mixing with EMII components in its upper mantle source, which is comparable with present Indian MORB. Comparisons indicate that the geo-chemistry, chronology and source characteristics of Dur抧goi ophiolite coincide with Pa-leo-tethyan ophiolites from 揝anjiang?area. Together with evidences from regional geology in adjacent areas, this study proves that independent paleo-tethyan basins evolved contemporarily, the dynamics of which is attributed to the interaction of mantle plume with over-riding lithosphere.

关键词： ophiolite, Paleo-Tethys, DUPAL anomaly, Indosinian movement.

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Characteristics and geological significance of olivine xenocrysts in Cenozoic volcanic rocks from western Qinling

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Progress in Natural Science:Materials International 2006年第12期16卷 1300-1306页

作者： SU Benxun~ 1,2.**, ZHANG Hongfu~1, XIAO Yan~ 1,2.and ZHAO Xinmiao~ 1,2.(1. State Key Laboratory of Lithospheric Evolution, {3. of geology and Geophysics, {2. academy of Sciences, beijing 10002., china 2. Graduate School of {2. academy of Sciences, beijing 10003., china) [a]State Key Laboratory of Lithospheric Evolution Institute of Geology and Geophysics Chinese Academy of Sciences Beijing China [b]Graduate School of chinese academy of Sciences Beijing China

Cenozoic volcanic rocks from the Haoti, Dangchang County of the western Qinling Mountains, contain a few clearly-zoned olivines. These olivines are relatively big in grain sizes and usually have cracks or broken features. Their cores have similar compositions （Mg#=90.4-91.0） to those for the peridotitic xenoliths entrained in host volcanic rocks and their rims are close to the compositions of olivine phenocrysts （Mg#=85.5-81.9）. The CaO contents in these zoned olivines are lower than 0.1%. These features demonstrate that the clearly-zoned olivines are xenocrysts and disaggregated from mantle peridotites. The zoned texture was the result of the interaction between the olivine and host magma. Available data show that the volcanic rocks would have been derived from the mantle source metasomatized by subducted hydrathermally-altered oceanic crust. The formation of these Cenozoic volcanic rocks was perhaps related to the rapid uplift of the Tibetan Plateau.

关键词： Western Qinling Dangchang Haoti Cenozoic volcanic rocks olivine xenocrysts zoned texture.

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Seismic wave propagating in Kelvin-Voigt homogeneous visco-elastic media

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Science china Earth Sciences 2006年第2期49卷 147-153页

作者： YUAN Chunfang1, PENG Suping1, ZHANG Zhongjie2.& LIU Zhenkuan3.1. china University of Mining & Technology, beijing 100083. china 2. institute of Geophysics, chinese academy of Sciences, beijing 100101, china 3. Exploration and Development Research institute of Daqing Oilfield, Daqing 163.12. china 1. china University of Mining & Technology Beijing 100083 China 2. institute of Geophysics Chinese Academy of Sciences Beijing 100101 China 3. Exploration and Development Research institute of Daqing Oilfield Daqing 163712 China

This paper studies, under a small disturbance, the responses of seismic transient wave in the visco-elastic media and the analytic solution of the corresponding third-order partial differential equation. A plane wave solution of Kelvin-Voigt homogeneous visco-elastic third-order partial differ-ential equation with a pulse source is obtained. By the principle of pulse stacking of particle vibration, the result is extended to the solution of Kelvin-Voigt homogeneous visco-elastic third-order partial differential equation with any source. The velocities of seismic wave propagating and the attenuation of seismic wave in Kelvin-Voigt homogeneous visco-elastic media are discussed. The velocities of seismic wave propagating and the coefficient of attenuation of seismic wave in Kelvin-Voigt homogeneous visco-elastic media are derived, expressed as functions of density of the media, elastic modulus and visco-elastic coefficient. These results can be applied in inversing lithology parameters in geophysical prospecting.

关键词： Kelvin-Voigt visco-elastic velocity attenuation seismic wave.

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Formal analysis and design of multi-party fair exchange protocols

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Science in china(Series F) 2006年第2期49卷 155-174页

作者： QING Sihan1,2.3.& LI Gaicheng1,3.1. Engineering Research Center for Information Security Technology, institute of Software, chinese {2. of Sciences, beijing 100080, china 2. beijing Zhongke Ansheng Corporation of Information Technology, beijing 100080, china 3. Graduate School of the chinese {2. of Sciences, beijing 10003., china 1. Engineering Research Center for Information Security Technology Institute of Software Chinese Academy of Sciences Beijing 100080 China 2. beijing Zhongke Ansheng Corporation of Information Technology Beijing 100080 China 3. Graduate School of the chinese academy of Sciences Beijing 100039 China

Based on the origin of message items and channel combination between transacting parties, and events and relations among events, this paper presents a concise, precise, and hierarchical model for general fair exchange protocols, formally specifies various security requirements which are able to reflect inherent requirements for fair exchange protocols more rigorously, and partition these security requirements with fine granularity. This work helps analyze, debug, and design multi-party fair exchange protocols more effectively and elaborately,

关键词： fair exchange logical protocol formal model security requirement.

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Mesozoic-Cenozoic tectonic transition in Kuqa Depression-Tianshan,Northwest china:Evidence from sandstone detrital and geochemical records

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Science china Earth Sciences 2005年第9期48卷 1387-1402页

作者： LI Zhong1, GUO Hong2. WANG Daoxuan3.& LIN Wei1 1. institute of geology and Geophysics, {2. academy of Sciences, beijing 10002., china 2. Tarim Oilfield Branch, CNPC, Korla 841000, china 3. Hefei University of Industry, Tunxilu 193. Hefei 2.0009, china 1. institute of geology and Geophysics Chinese Academy of Sciences 100029 Beijing Chin 2. Tarim Oilfield Branch CNPC 841000 Korla China 3. Hefei University of Industry Tunxilu 193 230009 Hefei Chin

Similar to compositional evolution of sandstone modes and detrital heavy minerals from different profiles in the Kuqa Depression, Northwest china, major element analysis of whole sandstones from the same profiles shows four discontinuous depositional interfaces or periods, respectively corresponding to Lower Triassic\Middle Triassic, Upper Jurassic\Lower Cretaceous, Lower Cretaceous\Paleogene and Miocene\Pliocene, and indicates five-phase evolution during Mesozoic-Cenozoic: (1) From the first to fifth phase, a depositional suite changes from maroon and coarse clastic, through grey-dark grey and fine, red and coarse, red-mottled, interlayered by gypsum, to brown and coarse clastic assemblages, accompanying detrital component evolution in unstable-stable-unstable-very unstable-very unstable assem- blages. It is indicated that carbonate and complex detritus gradually dominate in sandstones in post-Late Jurassic, with rapid reduction of compositional maturity. (2. For major element geo- chemical parameters of whole sandstones, CaO and Fe2.O * 3.MgO contents show a change sequence in high-low-high-higher-highest values, with rapid increasing in post-Late Jurassic. (3. Contra some aggregative indicators for weathering indexes of sandstone detrital component, Al2.3.(CaO+Na2.) and ln(Q/(L+CE)), show a change sequence in low-high-low-lower-lowest ratios, with rapid decreasing in post-Late Jurassic. It is found that sandstone samples of the first, second and later three phases may be distinguished from the A-CN-K and A-CNK-FM diagrams respectively. Therefore, in the Kuqa Depression-Tianshan, the most important discontinuous depositional interface recording paleotectonic and paleoclimatic transition occurred in Early Triassic\Middle Triassic and Late Jurassic\Early Cretaceous, respectively, and, however, tec- tonic differentiations of basin-range system finally result in distinct depositional systems but similar detrital weathering indexes across the Lower Cretaceous\Paleogene

关键词： Tianshan, Kuqa Depression, basin-range, depositional record, tectonic transition, Mesozoic-Cenozoic.

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