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Comparative Transcriptomic Analysis of Salt Adaptation in Roots of Contrasting Medicago truncatula Genotypes

Molecular Plant 2012年第5期5卷 1068-1081页

作者： Ons Zahaf Sandrine Blanchet Axel de Zelicourt Benoit Alunni Julie Plet Carole Laffont Laura de Lorenzo Sandrine Imbeaud Jean-Laurent lchante Anouck Diet Mounawer Badri Ana Zabalza Esther M. Gonzalez Herve Delacroix veronique gruber Florian Frugier Martin Crespi Institut des Sciences du Vegetal (ISV) CNRS 91198 Gif-sur-Yvette France Universite Paris Diderot Paris 7 75205 Paris Cedex 13 France Departamento de Microbiologia y Parasitologia Universidad de Sevilla 41012 Sevilla Spain Present address: Centro Nacional de Biotecnologia (CNB) CSIC 28049 Madrid Spain Centre de Genetique Moleculaire (CGM) CNRS Gif/Orsay DNA Microarray Platform (GODMAP) Universite Paris-Sud 11 91190 Gif-sur-Yvette France Present address: Genomique Fonctionnelle des tumeurs solides INSERM IUH Universit~ Paris Descartes 75010 Paris France Laboratory of Legumes Centre of Biotechnology of Borj Cedria BP 901 2050 Hammam-Lif Tunisia Departamento de Ciencias del Medio Natural Universidad P~blica de Navarra 31006 Pamplona Spain

Evolutionary diversity can be driven by the interaction of plants with different environments. Molecular bases involved in ecological adaptations to abiotic constraints can be explored using genomic tools. Legumes are major crops worldwide and soil salinity is a main stress affecting yield in these plants. We analyzed in the Medicago truncatula legume the root transcriptome of two genotypes having contrasting responses to salt stress： TN1.11, sampled in a salty Tunisian soil, and the reference Jemalong A17 genotype. TN1.11 plants show increased root growth under salt stress as well as a differential accumulation of sodium ions when compared to A17. Transcriptomic analysis revealed specific gene clusters preferentially regulated by salt in root apices of TN1.11, notably those related to the auxin pathway and to changes in histone variant isoforms. Many genes encoding transcription factors （TFs） were also differentially regulated between the two genotypes in response to salt. Among those selected for functional studies, overexpression in roots of the A17 ge- notype of the bHLH-type TF most differentially regulated between genotypes improved significantly root growth under salt stress. Despite the global complexity of the differential transcriptional responses, we propose that an increase in this bHLH TF expression may be linked to the adaptation of M. truncatula to saline soil environments.

关键词： root architecture abiotic stress legume transcriptome bHLH.

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