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Optimising mesh size with escape gaps in a dual-species portunid-trap fishery

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Aquaculture and Fisheries 2020年第6期5卷 308-316页

作者： matt K.Broadhurst Daniel J.Tolhurst Brian Hughes Vincent Raoult timothy m.smith Troy F.Gaston NSW Department of Primary Industries Fisheries Conservation Technology UnitNational Marine Science CentrePO Box 4321Coffs HarbourNSW2450Australia marine and Estuarine Ecology Unit School of Biological SciencesUniversity of QueenslandBrisbaneQLD4072Australia The Roslin Institute and Royal(Dick)School of Veterinary Studies University of EdinburghEaster BushMidlothianEH259RGUnited Kingdom Hunter Local Land Services PO Box 440TareeNSW2430Australia School of Environmental and Life Sciences University of NewcastleOurimbahNSW2258Australia

In south-eastern Australia,the same baited,round traps(comprising 50–57-mm mesh netting)are used to target giant mud,Scylla serrata and blue swimmer crabs,Portunus armatus in spatially separated *** fisheries are characterised by the common,problematic discarding of undersized portunids(mm carapace length;CL for *** and ***)and fish(yellowfin bream,Acanthopagrus australis).This poor selectivity was addressed here in two experiments assessing the utility of(1)traps partially or completely covered in larger mesh(91 mm to match the minimum legal size of the smaller ***),and then(2)any cumulative benefits of fitting species-specific escape *** experiment 1,there were no differences among catches of legal-sized portunids associated with either partial,or complete trap coverage with larger *** of mesh coverage,both designs of 91-mm traps also retained significantly fewer(by up to 42%)undersized *** and *** experiment 2,replicate traps completely covered in 91-mm mesh were tested against conventional traps comprising 56-mm mesh,and traps with the same mesh sizes,but also three escape gaps configured for either ***(46×120 mm)or ***(36×120 mm)(*** treatments in total).All modified traps maintained catches of legal-sized ***,and only the 91-mm traps with escape gaps caught fewer legal-sized *** undersized ***,*** and ***(mean catches reduced by up to 49%)were retained in all larger-meshed than small-meshed traps,and in all of those traps with escape gaps(by up to 95%)than *** there were no significant cumulative benefits of escape gaps in largermeshed traps(measured by a statistical interaction),there was a trend of fewer unwanted catches *** data support configuring portunid traps with mesh sizes matching the morphology of the smallest legal-sized target ***,simply retroactively fitting escape gaps in existing,smaller-m

关键词： Bycatch Escape gap mesh size Portunid

Strigolactones redefine plant hormones

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Science China(Life Sciences) 2016年第10期59卷 1083-1085页

作者： Lu Wang Steven m.smith School of Biological Sciences University of Tasmania Institute of Genetics and Developmental Biology Chinese Academy of sciences

A commonly accepted view of plant growth hormones is that their interaction with the cognate receptor protein is reversible, so that each hormone molecule can potentially interact multiple times with a receptor and so either amplify the hormone signal or maintain it over an extended period of time. The signal can be ＇cancelled＇ by degrading the hormone. Strigolactones present us with a potentially new paradigm. The receptor is a serine hydrolase-type protein which attacks the strigolactone resulting in covalent modi- fication of the receptor, while at the same time destroying the hormone. Strigolactone is apparently a one-use ＇dispos- able＇ hormone.

关键词：植物激素受体蛋白定义植物生长激素相互作用激素信号酸水解

History and evaluation of national-scale geochemical data sets for the United States

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Geoscience Frontiers 2013年第2期4卷 167-183页

作者： David B.smith Steven m.smith John D.Horton U.S.Geological Survey.Denver Federal Center MS 973.DenverCO 80225USA

Six national-scale,or near national-scale,geochemical data sets for soils or stream sediments exist for the United *** earliest of these,here termed the ＇Shacklette＇ data set,was generated by a U.S. Geological Survey（USGS） project conducted from 1961 to *** project used soil collected from a depth of about 20 cm as the sampling medium at 1323 sites throughout the conterminous *** National Uranium Resource Evaluation Hydrogeochemical and Stream Sediment Reconnaissance（NUREHSSR） Program of the *** of Energy was conducted from 1975 to 1984 and collected either stream sediments,lake sediments,or soils at more than 378,000 sites in both the conterminous *** *** sampled area represented about 65%of the *** Natural Resources Conservation Service（NRCS）,from 1978 to 1982,collected samples from multiple soil horizons at sites within the major crop-growing regions of the conterminous *** data set contains analyses of more than 3000 *** National Geochemical Survey,a USGS project conducted from 1997 to 2009,used a subset of the NURE-HSSR archival samples as its starting point and then collected primarily stream sediments, with occasional soils,in the parts of the *** covered by the NURE-HSSR *** data set contains chemical analyses for more than 70,000 *** USGS,in collaboration with the mexican Geological Survey and the Geological Survey of Canada,initiated soil sampling for the North American Soil Geochemical Landscapes Project in *** of three horizons or depths at more than 4800 sites in the *** completed in 2010,and chemical analyses are currently *** NRCS initiated a project in the 1990s to analyze the various soil horizons from selected pedons throughout the *** data set currently contains data from more than 1400 *** paper（1） discusses each data set in terms of its purpose,sample collection protocols,and analytical methods;and（2） evaluates each data set in terms

关键词： Geochemical mapping National-scale geochemical data Geochemical baselines United States

Breeding high-yield superior quality hybrid super rice by rational design

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National Science Review 2016年第3期3卷 283-294页

作者： Qian Qian Longbiao Guo Steven m.smith Jiayang Li State Key Laboratory for Rice Biology China National Rice Research InstituteChinese Academy of Agricultural Sciences State Key Laboratory of Plant Genomics and National Center for Plant Gene Research(Beijing) Institute of Genetics and Developmental BiologyChinese Academy of Sciences Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences School of Biological Sciences University of Tasmania

The challenge of meeting the increasing demand for worldwide rice production has driven a sustained quest for advances in rice breeding for yield. Two breakthroughs that led to quantum leaps in productivity last century were the introduction of semidwarf varieties and of hybrid rice. Subsequent gains in yield have been incremental. The next major leap in rice breeding is now upon us through the application of rational design to create defined ideotypes. The exploitation of wide-cross compatibility and intersubspecific heterosis,combined with rapid genome sequencing and the molecular identification of genes for major yield and quality traits have now unlocked the potential for rational design.

关键词： Oryza sativa L super rice hybrids molecular breeding grain yield grain quality

Water balloon-induced orbital fracture in an aviator

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military medical Research 2020年第2期7卷 245-248页

作者： timothy E.Holland David m.smith Guy N.Gibson Jared G.Brinkerhoff Flight and Operational medical Clinic 78th Medical Group655 Seventh StreetRobins Air Force BaseRobinsGA 31098USA Department of Radiology Ehrling Bergquist Clinic2501 Capehart RdOffutt AFBNEOffutt 68113-2160USA Flight and Operational medical Clinic 5th Medical Group194 Missilie AveMinot AFBNDMinot 58705USA

Background:Orbital fractures are common injuries found in facial *** etiologies of orbital fractures include motor vehicle collisions and *** report the case of a 32-year-old male who suffered an orbital fracture from a water ***,we describe the aeromedical complications that may result from this ***,we attempt to answer the question of when a patient may return to flying after sustaining such an injury through review of the *** presentation:A 32-year-old male pilot with the United States Air Force was at an outdoor event with his unit when he was struck with a water balloon launched from a sling shot into his left *** afterwards,he had an onset of subcutaneous emphysema and was escorted to a nearby Emergency *** tomography identified an orbital fracture with associated orbital and subcutaneous *** patient was evaluated by a plastic surgeon and was determined not to be a surgical *** weeks later,he returned to flying ***:Water balloons are thought to be safe and harmless ***,when coupled with sling shots,water balloons can become formidable projectiles capable of significant orbital injury including orbital *** injuries are concerning to aviators,as the most common sites for fractures of the orbit are the thin ethmoid and maxillary bones adjacent to the *** altitude,gases in the sinuses may expand and enter the orbit through these fractures,which may suddenly incapacitate the *** is important for flight surgeons to identify and assess these individuals to determine suitability for flying.

关键词： Boyle’s law Orbital emphysema Facial fracture

Automated SNP Genotype Clustering Algorithm to Improve Data Completeness in High-Throughput SNP Genotyping Datasets from Custom Arrays

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Genomics, Proteomics & Bioinformatics 2007年第3期5卷 256-259页

作者： Edward m.smith Jack Littrell michael Olivier Human and molecular Genetics Center Medical College of WisconsinMilwaukeeWI 53226USA.

High-throughput SNP genotyping platforms use automated genotype calling algorithms to assign genotypes. While these algorithms work efficiently for individual platforms, they are not compatible with other platforms, and have individual biases that result in missed genotype calls. Here we present data on the use of a second complementary SNP genotype clustering algorithm. The algorithm was originally designed for individual fluorescent SNP genotyping assays, and has been optimized to permit the clustering of large datasets generated from custom-designed Affymetrix SNP panels. In an analysis of data from a 3K array genotyped on 1,560 samples, the additional analysis increased the overall number of genotypes by over 45,000, significantly improving the completeness of the experimental data. This analysis suggests that the use of multiple genotype calling algorithms may be advisable in high-throughput SNP genotyping experiments. The software is written in Perl and is available from the corresponding author.

关键词： clustering SNP genotyping algorithm

Epidemiology of ocular surface squamous neoplasia in veterans: a retrospective casecontrol study

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Eye and Vision 2019年第1期6卷 99-104页

作者： Logan m.smith Shiv Lamba Carol L.Karp Anat Galor miami Veterans Administration medical Center 1201 NW 16th StMiamiFL 33125USA Bascom Palmer Eye Institute Department of OphthalmologyUniversity of Miami900 NW 17th StreetMiamiFL 33136USA Flint Hill School OaktonVirginiaUSA

Background:A number of risk factors have been evaluated in ocular surface squamous neoplasia,but few studies have assessed risk factors specific to the armed forces veteran ***:We conducted a retrospective case-control study on 55 patients and 55 age-matched controls with biopsy-proven ocular surface squamous neoplasia from the miami Veterans Administration Hospital Eye Clinic to investigate potential risk factors encountered by veterans,including service-specific ***-specific risk factors included ionizing radiation exposure,Agent Orange exposure,deployment to Southwest Asia,and exposure to the series of biochemical warfare tests known as Project Shipboard Hazard and *** was analyzed with SPSS(SPSS Inc.,Chicago,IL)using t-tests,chi-squared,and logistic regression analysis,with a p-value ofmous neoplasia was lifetime sun exposure both directly assessed via historical quantification of exposure by dermatology practitioners(Odds Ratio(OR)5.4,95%Confidence Interval(CI)2.27–12.847,pmarkers of basal cell carcinoma(OR 3.157,95%CI 1.286–7.748,p=0.010)and pingueculae(OR 5.267,95%CI 2.104–13.186,pment were not associated with an increased risk of ocular surface squamous *** to ionizing radiation and involvement in Project Shipboard Hazard and Defense were not documented among any cases or ***:The results of our study are consistent with prior established risk factors,namely highlighting the important role of sun exposure in ocular surface squamous neoplasia among veterans.

关键词： Ocular surface squamous neoplasia Risk factors Veteran population

Proton-Resistant Quantum Dots: Stability in Gastrointestinal Fluids and Implications for Oral Delivery of Nanoparticle Agents

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Nano Research 2009年第6期2卷 500-508页

作者： Aaron m.mohs Hongwei Duan Brad A.Kairdolf Andrew m.smith Shuming Nie Departments of Biomedical Engineering and Chemistry Emory University and Georgia Institute of Technology101 Woodruff Circle NESuite 2001AtlantaGeorgia 30322USA

Semiconductor quantum dots(QDs)have shown great promise as fluorescent probes for molecular,cellular and in vivo ***,the fluorescence of traditional polymer-encapsulated QDs is often quenched by proton-induced etching in acidic *** is a major problem for applications of QDs in the gastrointestinal tract because the gastric(stomach)environment is strongly acidic(pH 12).Here we report the use of proton-resistant surface coatings to stabilize QD fl uorescence under acidic *** both hyperbranched polyethylenimine(PEI)and its polyethylene glycol derivative(PEG-grafted PEI),we show that the fl uorescence of coreshell CdSe/CdS/ZnS QDs is effectively protected from quenching in simulated gastric *** comparison,amphiphilic lipid or polymer coatings provide no protection under similarly acidic *** proton-resistant QDs are found to cause moderate membrane damage to cultured epithelial cells,but PEGylation(PEG grafting)can be used to reduce cellular toxicity and to improve nanoparticle stability.

关键词： Nanoparticle quantum dot oral delivery gastrointestinal polyethylenimine(PEI) polyethylene glycol(PEG)

Estimation of the density of neural,glial,and endothelial lineage cells in the adult mouse dentate gyrus

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Neural Regeneration Research 2022年第6期17卷 1286-1292页

作者： Joshua D.Rieskamp Patricia Sarchet Bryon m.smith Elizabeth D.Kirby Neuroscience Graduate Program The Ohio State UniversityColumbusOHUSA Department of Psychology The Ohio State UniversityColumbusOHUSA Department of Neuroscience The Ohio State UniversityColumbusOHUSA Chronic Brain Injury Program The Ohio State UniversityColumbusOHUSA

The dentate gyrus subregion of the mammalian hippocampus is an adult neural stem cell niche and site of lifelong *** regarding the role of adult-born neuron synaptic integration in hippocampal circuit function are framed by robust estimations of adultborn versus pre/perinatally-born neuron *** contrast,the non-neurogenic functions of adult neural stem cells and their immediate progeny,such as secretion of bioactive growth factors and expression of extracellular matrix-modifying proteins,lack similar framing due to few estimates of their number versus other prominent secretory ***,we apply immunohistochemical methods to estimate cell density of neural stem/progenitor cells versus other major classes of glial and endothelial cell types that are potentially secretory in the dentate gyrus of adult *** the cell types quantified,we found that GFAP^(+)SOX2^(+)stellate astrocytes were the most numerous,followed by CD31^(+)endothelia,GFAP-SOX2^(+)intermediate progenitors,Olig2^(+)oligodendrocytes,Iba1+microglia,and GFAP^(+)SOX2^(+)radial glia-like neural stem *** did not observe any significant sex differences in density of any cell ***,neural stem/progenitor cells were present at a similar density as several cell types known to have potent functional roles via their *** findings may be useful for refining hypotheses regarding the contributions of these cell types to regulating hippocampal function and their potential therapeutic *** experimental protocols were approved by the Ohio State University Institutional Animal Care and Use Committee(protocol#2016A00000068)on July 14,2016.

关键词： adult neurogenesis dentate gyrus endothelia glia hippocampus neural stem cell secretome stereology