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Gut microbial interactions based on network construction and bacterial pairwise cultivation

science china(Life sciences) 2024年第8期67卷 1751-1762页

作者： Min-Zhi jiang Chang liu Chang Xu He jiang Yulin Wang {3.-jiang liu State Key Laboratory of Microbial Technology Shandong UniversityQingdao 266000China State Key Laboratory of Microbial Resources and Environmental Microbiology Research Center(EMRC)Institute of MicrobiologyChinese Academy of SciencesBeijing 100101China University of chinese academy of sciences Beijing 100049China

Association networks are widely applied for the prediction of bacterial interactions in studies of human gut ***,the experimental validation of the predicted interactions is challenging due to the complexity of gut microbiomes and the limited number of cultivated *** this study,we addressed this challenge by integrating in vitro time series network(TSN)associations and cocultivation of TSN taxon *** samples were collected and used for cultivation and enrichment of gut microbiome on YCFA agar plates for 13.*** cells were harvested for DNA extraction and metagenomic sequencing.A total of 198 metagenome-assembled genomes(MAGs)were *** dynamics of bacteria growing on the YCFA agar were used to infer microbial association *** experimentally validate the interactions of taxon pairs in networks,we selected 24 and 19 bacterial strains from this study and from the previously established human gut microbial biobank,respectively,for pairwise *** co-culture experiments revealed that most of the interactions between taxa in networks were identified as neutralism(51.67%),followed by commensalism(21.67%),amensalism(18.3.%),competition(5%)and exploitation(3.3.%).Genome-centric analysis further revealed that the commensal gut bacteria(helpers and beneficiaries)might interact with each other via the exchanges of amino acids with high biosynthetic costs,short-chain fatty acids,and/or *** also validated 12 beneficiaries by adding 16 additives into the basic YCFA medium and found that the growth of 66.7%of these strains was significantly *** approach provides new insights into the gut microbiome complexity and microbial interactions in association *** work highlights that the positive relationships in gut microbial communities tend to be overestimated,and that amino acids,short-chain fatty acids,and vitamins are contributed to the positive relationships.

关键词： human gut microbiome gut microbial pairwise interaction co-culture association network microbial community

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Mechanical behavior of 2G NPR bolt anchored rock samples under static disturbance loading

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Journal of Mountain science 2024年第7期21卷 2494-2516页

作者： WANG Jiong jiang Jian WANG Siyu CHANG Yiwen liu Peng HE Manchao CHENG shuang State Key Laboratory for Tunnel Engineering China University of Mining and Technology(Beijing)Beijing 100083China School of Mechanics and Civil Engineering China University of Mining and Technology(Beijing)Beijing 100083China

The deep mining of coal resources is accompanied by severe environmental challenges and various potential engineering *** implementation of NPR(negative Poisson's ratio)bolts are capable of controlling large deformations in the surrounding rock *** paper focuses on studying the mechanical properties of the NPR bolt under static disturbance *** deep nonlinear mechanical experimental system was used to study the mechanical behavior of rock samples with different anchored types(unanchored/PR anchored/2G NPR anchored)under static disturbance *** whole process of rock samples was taken by high-speed camera to obtain the real-time failure characteristics under static disturbance *** the same time,the acoustic emission signal was collected to obtain the key characteristic parameters of acoustic emission such as acoustic emission count,energy,and *** deformation at the failure of the samples was calculated and analyzed by digital speckle *** findings indicate that the failure mode of rock is influenced by different types of *** peak failure strength of 2G NPR bolt anchored rock samples exhibits an increase of 6.5%when compared to the unanchored rock *** cumulative count and cumulative energy of acoustic emission exhibit a decrease of 62.16%and 62.90%,*** maximum deformation of bearing capacity exhibits an increase of 59.27%,while the failure time demonstrates a delay of 42.86%.The peak failure strength of the 2G NPR bolt anchored ones under static disturbance load exhibits an increase of 5.94%when compared to the rock anchored by PR(Poisson's ratio)*** cumulative count and cumulative energy of acoustic emission exhibit a decrease of 47.16%and 43.86%,*** maximum deformation of the bearing capacity exhibits an increase of 50.43.,and the failure time demonstrates a delay of 3.%.After anchoring by 2G NPR bolt,anchoring support effectively reduces the risk of damage caused by s

关键词： Anchored rock samples Static disturbance load Acoustic emission characteristics Digital speckle Negative Poisson's ratio

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Creep damage evolution process of asphalt binder based on viscoelastic characteristics

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Journal of Traffic and Transportation Engineering(English Edition) 2024年第3期11卷 497-506页

作者： Xiaofei Qi shuang Tian Liyan Shan shuang liu Yajie Wang School of Transportation science and Engineering Harbin Institute of TechnologyHarbin 150090China College of Water Conservancy&Architectural Engineering Shihezi UniversityShihezi 832003China

The creep damage evolution of asphalt binder plays a significant role in investigating the formation mechanism of *** rutting is the common distress at high temperatures for asphalt ***,the reliability of existing creep damage parameters is under questioned,and these parameters cannot accurately illustrate the change of intrinsic microstructure for asphalt *** this paper,a new test protocol was given access to study the evolution of viscoelastic parameters during creep *** was completed by inserting the frequency sweep during creep *** frequency sweep curve clusters were fitted by the generalized Kelvin-Voigt model for obtaining the change law of model *** on the change law and sensitivity analysis of model parameters,(E_(2)+E_(3.)/2 was proposed as the creep damage *** to the curve of(E_(2)+E_(3.)/2 versus loading time,two stages during the creep test could be identified:an approximate constant value in phase I and a linear decrease in phase *** differences about creep property of binders could be determined by this new proposed *** results not only ensure better understanding of the creep damage mechanism of binders,but also lay the theoretical foundation on predicting the anti-rutting performance of binders.

关键词： Asphalt binder Multi-stage creep test Damage variable Evolution law

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Unidirectional movement behavior of underwater bubbles on the wettability gradient mesh via asymmetrical bounce

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science china Chemistry 2024年第8期67卷 2606-2613页

作者： Yuzhen Ning Zhihong Zhao shuang Ben Qiang Li Cunming Yu Xudong Zhang Huawei Chen Kesong liu Lei jiang School of Mechanical Engineering and Automation Beihang UniversityBeijing 100191China Key Laboratory of Bio-Inspired Smart Interfacial science and Technology School of ChemistryBeihang UniversityBeijing 100191China Research institute of Aero-Engine Beihang UniversityBeijing 100191China School of Materials science and Engineering Shenyang Ligong UniversityShenyang 110159China Tianmushan Laboratory Hangzhou 310023China The Analysis Testing CenterBeihang UniversityBeijing 100191China

The impact of underwater bubbles on solid surfaces with a gradient wettability is important for fundamental science and technological applications. Despite progress in the translational motion of underwater bubbles on asymmetric surface, a fundamental dynamic understanding of asymmetrical bounce behavior of the underwater bubble needs to be further ***, we investigate asymmetrical bounce of underwater bubbles after impacting the wettability gradient copper mesh *** bounce of the underwater bubble on the wettability gradient mesh(WGM) surface is composed by asymmetrical spread in the spread process and asymmetrical recoil in the recoil process, which induce the unidirectional movement ***, effective bubble-size manipulation can be easily implemented due to different volumes of bubbles remaining at different locations of WGM surface. We envision that this work will provide a new understanding of asymmetrical bounce behavior of the underwater bubble on the wettability gradient surface, and propose a novel and feasible strategy for constructing the underwater bubble manipulation system.

关键词： asymmetrical bounce unidirectional movement behavior gradient wettability

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Ultra-low frequency magnetic energy focusing for highly effective wireless powering of deep-tissue implantable electronic devices

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National science Review 2024年第05期11卷 272-290页

作者： Yuanyuan Li Zhipeng Chen Yuxin liu Zijian liu Tong Wu Yuanxi Zhang Lelun Peng Xinshuo Huang shuang Huang Xudong Lin Xi Xie Lelun {3. Guangdong Provincial Key Laboratory of Sensor Technology and Biomedical Instrument School of Biomedical EngineeringShenzhen Campus of Sun Yat-Sen University School of Mechanical and Electrical Engineering Guangzhou University State Key Laboratory of Optoelectronic Materials and Technologies Guangdong Province Key Laboratory of Display Material and Technology School of Electronics and Information Technology Sun Yat-Sen University

The limited lifespan of batteries is a challenge in the application of implantable electronic devices. Existing wireless power technologies such as ultrasound, near-infrared light and magnetic fields cannot charge devices implanted in deep tissues, resulting in energy attenuation through tissues and thermal ***, an ultra-low frequency magnetic energy focusing(ULFMEF) methodology was developed for the highly effective wireless powering of deep-tissue implantable devices. A portable transmitter was used to output the low-frequency magnetic field(<50 Hz), which remotely drives the synchronous rotation of a magnetic core integrated within the pellet-like implantable device, generating an internal rotating magnetic field to induce wireless electricity on the coupled coils of the device. The ULFMEF can achieve energy transfer across thick tissues(up to 20 cm) with excellent transferred power(4–15 mW) and non-heat effects in tissues, which is remarkably superior to existing wireless powering technologies. The ULFMEF is demonstrated to wirelessly power implantable micro-LED devices for optogenetic neuromodulation, and wirelessly charged an implantable battery for programmable electrical stimulation on the sciatic nerve. It also bypassed thick and tough protective shells to power the implanted devices. The ULFMEF thus offers a highly advanced methodology for the generation of wireless powered biodevices.

关键词： ultra-low frequency transcutaneous energy transmission electromagnetic generator implantable electronic device deep tissue

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Mitigation of N_(2)O emissions in water-saving paddy fields:Evaluating organic fertilizer substitution and microbial mechanisms

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Journal of Integrative Agriculture 2024年第9期23卷 3159-3173页

作者： Delei Kong Xianduo Zhang Qidong Yu Yaguo Jin Peikun jiang shuang Wu Shuwei liu Jianwen Zou College of Environment and Resources/College of Carbon Neutrality Zhejiang A&F UniversityHangzhou 311300China jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation College of Resources and Environmental SciencesNanjing Agricultural UniversityNanjing 210095China Department of Biochemistry and Molecular Biology College of Life SciencesNanjing Agricultural UniversityNanjing 210095China jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource UtilizationNanjing Agricultural UniversityNanjing 210095China

Water-saving irrigation strategies can successfully alleviate methane emissions from rice fields,but significantly stimulate nitrous oxide(N_(2)O)emissions because of variations in soil oxygen level and redox ***,the relationship linking soil N_(2)O emissions to nitrogen functional genes during various fertilization treatments in water-saving paddy fields has rarely been ***,the mitigation potential of organic fertilizer substitution on N_(2)O emissions and the microbial mechanism in rice fields must be further *** study examined how soil N_(2)O emissions were affected by related functional microorganisms(ammonia-oxidizing archaea(AOA),ammonia-oxidizing bacteria(AOB),nirS,nirK and nosZ)to various fertilization treatments in a rice field in southeast china over two *** this study,three fertilization regimes were applied to rice cultivation:a no nitrogen(N)(Control),an inorganic N(Ni),and an inorganic N with partial N substitution with organic manure(N_(i)+N_(o)).Over two rice-growing seasons,cumulative N_(2)O emissions averaged 0.47,4.62 and 4.08 kg ha^(−1)for the Control,Ni and N_(i)+N_(o)treatments,*** comparison to the Ni treatment,the N_(i)+N_(o)fertilization regime considerably reduced soil N_(2)O emissions by 11.6%while maintaining rice yield,with a lower N_(2)O emission factor(EF)from fertilizer N of 0.95%.Nitrogen fertilization considerably raised the AOB,nirS,nirK and nosZ gene abundances,in comparison to the Control ***,the substitution of organic manure for inorganic N fertilizer significantly decreased AOB and nirS gene abundances and increased nosZ gene *** AOB responded to N fertilization more sensitively than the *** N_(2)O emissions significantly correlated positively with AOB and nirS gene abundances while having a negative correlation with nosZ gene abundance and the nosZ/nirS ratio across N-fertilized *** summary,we conclude that organic manure substi

关键词： organic manure substitution inorganic fertilizer N_(2)O functional microbe rice paddy

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Engineering the Interface Between Au Nanoparticles and CoO-Ov to Enhance the Catalytic Performance of 5-Hydroxymethylfurfural(HMF)to 2,5-Dimethylfuran(DMF)

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Chemical Research in chinese Universities 2024年第1期40卷 47-54页

作者： XIANG shuang GUO Yong liu Xiaohui WANG Yanqin Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering Feringa Nobel Prize Scientist Joint Research CenterResearch Institute of Industrial CatalysisSchool of Chemistry and Molecular EngineeringEast China University of Science and TechnologyShanghai 200237P.R.China

The interface between Au and support has attracted extensive interest because of its unique catalytic ability for hydrogen activation in catalytic hydrogenation/hydrogenolysis ***,we create the Au-CoO-OV interface in the 1.0%Au/Co3.4-Rod-250 catalyst,which could dissociate H2 via the heterolytic way to yield rich hydride species and achieve excellent catalytic performance in the hydrogenolysis of biomass-derived 5-hydroxymethylfurfural(HMF)to 2,5-dimethylfuran(DMF).The XRD and HRTEM analyses show that Au nanoparticles are uniformly dispersed on CoO-OV surface and in situ DRIFTS spectra show the enhancement of heterolytic dissociation of hydrogen(signals of Au-D and O-D vibration)compared with bare CoO(Co3.4-Rod-250).This work provides insights for fabricating highly active Au-support catalysts for catalytic hydrogenation/hydrogenolysis reactions.

关键词： Au-CoO-OV interface Hydride species Heterolytic dissociation 5-Hydroxymethylfurfural(HMF) 2 5-Dimethylfuran(DMF)

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Pd-catalyzed intermolecular Si–O formation via Si–C activation

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science china Chemistry 2024年第8期67卷 2661-2669页

作者： shuang liu Yu-Shu Chen Yichen Wu Peng Wang State Key Laboratory of Organometallic Chemistry Shanghai Institute of Organic ChemistryUniversity of Chinese Academy of SciencesShanghai 200032China School of Chemistry and Materials science Hangzhou Institute for Advanced StudyUniversity of Chinese Academy of SciencesHangzhou 310024China College of Material Chemistry and Chemical Engineering Key Laboratory of Organosilicon Chemistryand Material Technology of Ministry of EducationHangzhou Normal UniversityHangzhou 311121China

The development of efficient Si–O bond formation reaction with 100% atom-economy, excellent functional group tolerance, and broad scope under mild conditions is highly desired due to the prevalence of silanol, silyl ether, and their derivatives in synthetic chemistry and materials science. Here, we have realized the Pd-catalyzed Si–O formation reaction via a Si–C activation approach with 100% atom-economy by employing silacyclobutanes(SCBs) and various hydroxy-containing substrates, including water,alcohols, phenols, and silanols. This protocol features a broad substrate scope, remarkable functional compatibility and mild conditions, providing a series of silanols, silyl ethers in high efficiency. Notably, this protocol could also be used for selective protection of hydroxy functionalities, and for the access of a class of novel polymers containing Si–O main chain. Preliminary mechanistic studies unveiled that this reaction underwent a Pd-catalyzed concerted ring-opening mechanism.

关键词： Si–O formation Si–C activation palladium silacyclobutane silanol silyl ether

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RNA modifications in cellular metabolism:implications for metabolism-targeted therapy and immunotherapy

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Signal Transduction and Targeted Therapy 2024年第4期9卷 1565-1594页

作者： Wei-Wei liu Si-Qing Zheng Tian Li Yun-Fei Fei Chen Wang shuang Zhang Fei Wang Guan-Min jiang Hao Wang Department of Laboratory Medicine The First Affiliated Hospital of USTCDivision of Life Sciences and MedicineUniversity of Science and Technology of ChinaHefeiChina School of Clinical Medicine Shandong UniversityJinanChina Core Unit of National Clinical Research Center for Laboratory Medicine HefeiChina Neurosurgical Department The First Affiliated Hospital of USTCDivision of Life Sciences and MedicineUniversity of Science and Technology of ChinaHefeiChina Department of Clinical Laboratory The Fifth Affiliated HospitalSun Yat-sen UniversityZhuhaiChina

Cellular metabolism is an intricate network satisfying bioenergetic and biosynthesis requirements of *** studies have been constantly making inroads in our understanding of pathophysiology,and inspiring development of *** a crucial component of epigenetics at post-transcription level,RNA modification significantly determines RNA fates,further affecting various biological processes and cellular *** be noted,immunometabolism defines the metabolic alterations occur on immune cells in different stages and immunological *** this review,we characterize the distribution features,modifying mechanisms and biological functions of 8 RNA modifications,including N6-methyladenosine(m6A),N6,2'-O-dimethyladenosine(m6Am),N1-methyladenosine(m1A),5-methylcytosine(m5C),N4-acetylcytosine(ac4C),N7-methylguanosine(m7G),Pseudouridine(V),adenosine-to-inosine(A-to-l)editing,which are relatively the most studied *** regulatory roles of these RNA modification on metabolism in diverse health and disease contexts are comprehensively described,categorized as glucose,lipid,amino acid,and mitochondrial *** we highlight the regulation of RNA modifications on immunometabolism,further influencing immune *** all,we provide a thorough discussion about clinical implications of RNA modification in metabolism-targeted therapy and immunotherapy,progression of RNA modification-targeted agents,and its potential in RNAtargeted ***,we give legitimate perspectives for future researches in this field from methodological requirements,mechanistic insights,to therapeutic applications.

关键词： metabolism targeted alterations

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Marginal land in china suitable for bioenergy crops under diverse socioeconomic and climate scenarios from 2020 to 2100

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Big Earth Data 2024年第3期8卷 566-586页

作者： Jingying Fu Qiang Gao Gang Lin Dong jiang Yanan Zhao shuang Lue institute of Geographic sciences and Natural Resources Research Chinese Academy of SciencesBeijingChina College of Resources and Environment University of Chinese Academy of SciencesBeijingChina Key Laboratory of Coupling Processes and Effects of Natural Resource Elements Ministry of Natural ResourcesBeijingChina Key Laboratory of Carrying Capacity Assessment for Resource and Environment Ministry of Natural ResourcesBeijingChina College of Geoscience and Surveying Engineering China University of Mining and Technology(Beijing)BeijingChina

Maximizing the development of renewable energy plays a critical role in mitigating the climate *** land provides space for the development of biomass energy;however,it remains unclear how the amount and spatial distribution of marginal land that is suitable for energy crop development will change in the ***,we project energy marginal land changes in china following the shared socioeconomic pathway(SSP)and/or repre-sentative concentration path(RCP).We provide datasets of mar-ginal land,agriculturally suitable land,and potentially suitable for energy crops under historical scenarios and six future scenarios(***1-1.9,SSP1-2.6,SSP4-3.4,SSP2-4.5,SSP4-6.0,and SSP3.7.0)for the period 2020-2100,with a spatial resolution of 5 *** the six scenarios,from 2020-2100,the area of suitable marginal land ranged from 1.90-16.28(Jatropha curcas L.)to 3..3.-73.97(Panicum virgatum L.)(×10^(4)km^(2)),depending on the choice of energy crops and climate *** on the growing suitability of eight important bioenergy crops-Ricinus communis L.,Saccharum officinarum L.,Pistacia chinensis Bunge,Panicum virga-tum L.,Jatropha curcas L.,Miscanthus giganteus J.,Manihot esculenta Crantz,and Sorghum bicolor Moench-our dataset can be used to identify suitable locations for specific energy *** new syn-thetic dataset could support the development of multiscenariobased solutions related to carbon neutrality,ecosystem services,and energy transition.

关键词： Marginal land climate change energy crops liquid fuel

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