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Comprehensive analysis of clinical and biological value of ING family genes in liver cancer

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World Journal of Gastrointestinal Oncology 2024年第6期16卷 2592-2609页

作者： shi-cai Liu School of Medical Information Wannan Medical CollegeWuhu 241002Anhui ProvinceChina

BACKGROUND Liver cancer(LIHC)is a malignant tumor that occurs in the liver and has a high mortality in *** ING family genes were identified as tumor suppressor *** expression of these genes can lead to cell cycle arrest,senescence and/or *** family genes are promising targets for anticancer ***,their role in LIHC is still not well *** To have a better understanding of the important roles of ING family members in *** A series of bioinformatics approaches(including gene expression analysis,genetic alteration analysis,survival analysis,immune infiltration analysis,prediction of upstream microRNAs(miRNAs)and long noncoding RNAs(lncRNAs)of ING1,and ING1-related gene functional enrichment analysis)was applied to study the expression profile,clinical relationship,prognostic significance and immune infiltration of ING in *** relationship between ING family genes expression and tumor associated immune checkpoints was investigated in *** molecular mechanism of ING1 mediated hepatocarcinogenesis was preliminarily *** mRNA/protein expression of different ING family genes in LIHC was analyzed in different databases,showing that ING family genes were highly expressed in *** 47 samples from 366 LIHC patients,the ING family genes were altered at a rate of 13%.By comprehensively analyzing the expression,clinical pathological parameters and prognostic value of ING family genes,ING1/5 was ***1/5 was related to poor prognosis of LIHC,suggesting that they may play key roles in LIHC tumorigenesis and *** of the target miRNAs of ING1 was identified as *** upstream lncRNAs of hsa-miR-214-3p,U91328.1,and HCG17,were *** the same time,we found that the expression of ING family genes was correlated with immune cell infiltration and immune checkpoint *** This study lays a foundation for further research on the potential mechanism and clinical v

关键词： Liver cancer ING family genes Noncoding RNAs Immune cell infiltration Prognosis

Induced pluripotent stem cells(iPSCs):molecular mechanisms of induction and applications

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Signal Transduction and Targeted Therapy 2024年第5期9卷 2065-2090页

作者： Jonas Cerneckis Hongxia cai Yanhong shi department of Neurodegenerative Diseases Beckman Research Institute of City of HopeDuarteCA 91010USA Irell&Manella Graduate School of Biological Sciences Beckman Research Institute of City of HopeDuarteCA 91010USA

The induced pluripotent stem cell(iPSC)technology has transformed in vitro research and holds great promise to advance regenerative *** have the capacity for an almost unlimited expansion,are amenable to genetic engineering,and can be differentiated into most somatic cell *** have been widely applied to model human development and diseases,perform drug screening,and develop cell *** this review,we outline key developments in the iPSC field and highlight the immense versatility of the iPSC technology for in vitro modeling and therapeutic *** begin by discussing the pivotal discoveries that revealed the potential of a somatic cell nucleus for reprogramming and led to successful generation of *** consider the molecular mechanisms and dynamics of somatic cell reprogramming as well as the numerous methods available to induce ***,we discuss various iPSC-based cellular models,from mono-cultures of a single cell type to complex three-dimensional organoids,and how these models can be applied to elucidate the mechanisms of human development and *** use examples of neurological disorders,coronavirus disease 2019(COVID-19),and cancer to highlight the diversity of disease-specific phenotypes that can be modeled using iPSC-derived *** also consider how iPSC-derived cellular models can be used in high-throughput drug screening and drug toxicity ***,we discuss the process of developing autologous and allogeneic iPSC-based cell therapies and their potential to alleviate human diseases.

关键词： mechanisms programming holds

Circulating tumor DNA in liquid biopsy: Current diagnostic limitation

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World Journal of Gastroenterology 2024年第15期30卷 2175-2178页

作者： shi-cai Liu School of Medical Information Wannan Medical CollegeWuhu 241002Anhui ProvinceChina

With the rapid development of science and technology,cell-free DNA(cfDNA)is rapidly becoming an important biomarker for tumor diagnosis,monitoring and prognosis,and this cfDNA-based liquid biopsy technology has great potential to become an important part of precision *** is the total amount of free DNA in the systemic circulation,including DNA fragments derived from tumor cells and all other somatic *** cells release fragments of DNA into the bloodstream,and this source of cfDNA is called circulating tumor DNA(ctDNA).cfDNA detection has become a major focus in the field of tumor research in recent years,which provides a new opportunity for non-invasive diagnosis and prognosis of *** this paper,we discuss the limitations of the study on the origin and dynamics analysis of ctDNA,and how to solve these problems in the *** the future faces major challenges,it also con-tains great potential.

关键词： Cell-free DNA Circulating tumor DNA Liquid biopsy Cancer Diagnosis Prognosis

Interplay of RNA-binding proteins controls germ cell development in zebrafish

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Journal of Genetics and Genomics 2024年第9期51卷 889-899页

作者： de-Li shi Laboratory of developmental Biology CNRS-UMR7622Institut de Biologie Paris-Seine(IBPS)Sorbonne University75005 ParisFrance

The specification of germ cells in zebrafish mostly relies on an inherited mechanism by which localized maternal determinants,called germ plasm,confer germline fate in the early *** studies have partially allowed the identification of key regulators governing germ plasm formation and subsequent germ cell ***-binding proteins,acting in concert with other germ plasm components,play essential roles in the organization of the germ plasm and the specification,migration,maintenance,and differentiation of primordial germ *** loss of their functions impairs germ cell formation and causes sterility or sexual *** is emerging that they instruct germline development through differential regulation of mRNA fates in somatic and germ ***,the challenge remains to decipher the complex interplay of maternal germ plasm components in germ plasm compartmentalization and germ cell *** failure to control the developmental outcome of germ cells disrupts the formation of gametes,it is important to gain a complete picture of regulatory mechanisms operating in the germ cell *** review sheds light on the contributions of RNA-binding proteins to germ cell development in zebrafish and highlights intriguing questions that remain open for future investigation.

关键词： Germplasm Primordialgerm cell Germlinestem cell Gametogenesis Zebrafish RNA-binding protein Posttranscriptional gene expression Translational activation and repression

Primordial black holes and curvature perturbations from false vacuum islands

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Science China(Physics,Mechanics & Astronomy) 2024年第9期67卷 58-72页

作者： Rong-Gen cai Yu-shi Hao Shao-Jiang Wang School of Physical Science and Technology Ningbo UniversityNingbo 315211China CAS Key Laboratory of Theoretical Physics Institute of Theoretical PhysicsChinese Academy of SciencesBeijing 100190China School of Physical Sciences University of Chinese Academy of SciencesBeijing 100049China Asia Pacific Center for Theoretical Physics Pohang 37673Republic of Korea

Recently,much attention has been focused on the false vacuum islands that are flooded by an expanding ocean of true-vacuum bubbles slightly later than most of the other parts of the *** delayed decay regions will accumulate locally larger vacuum energy density by staying in the false vacuum longer than those already transited into the true vacuum.A false vacuum island with thus acquired density contrast of a super-horizon size will evolve locally from radiation dominance to vacuum dominance,creating a local baby Universe that can be regarded effectively as a local closed *** such density contrasts of super-horizon sizes can ever grow large enough to exceed the threshold of gravitational collapse,primordial black holes will form similar to those collapsing curvature perturbations on super-horizon scales induced by small-scale enhancements during *** not,such density contrasts can still induce curvature perturbations potentially observable *** this paper,we revisit and elaborate on the generations of primordial black holes and curvature perturbations from delayed-decayed false vacuum islands during asynchronous first-order phase transitions with fitting formulas convenient for future model-independent studies.

关键词： first-order phase transitions primordial black holes curvature perturbations

Early diagnostic strategies for colorectal cancer

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World Journal of Gastroenterology 2024年第33期30卷 3818-3822页

作者： shi-cai Liu Han Zhang School of Medical Information Wannan Medical CollegeWuhu 241002Anhui ProvinceChina School of Basic Medical Sciences Wannan Medical CollegeWuhu 241002Anhui ProvinceChina

At present,cancer is still an important factor threatening human *** cancer(CRC)is one of the top three most common cancers worldwide and one of the deadliest malignancies in *** latest data showed that CRC incidence and mortality rank third and second,respectively,among global *** and accurate diagnosis is crucial to reduce the morbidity,mortality and improve survival of patients with CRC,but the current early diagnostic methods have *** effectiveness and compliance of diagnostic methods have a certain impact on whether people choose *** this editorial,we explore strategies for the early diagnosis of CRC,including stool-based,blood-based,direct visualization,and imaging examinations.

关键词： Colorectal cancer Diagnostic markers Colonoscopy Fecal immunochemical test Fecal occult blood test Circulating tumor cells Circulating tumor DNA

Monitoring of Cell Membrane Microenvironment Based on DNA Nanodevices

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Chemical Research in Chinese Universities 2024年第2期40卷 255-267页

作者： NAN Hexin cai Ming KUANG shi NIE Zhou State Key Laboratory of Chemo/Biosensing and Chemometrics College of Chemistry and Chemical EngineeringHunan Provincial Key Laboratory of Biomacromolecular Chemical BiologyHunan UniversityChangsha410082P.R.China

The cell membrane is a critical barrier for cellular homeostasis,integral to signaling and intercellular communication,and vital for understanding cellular functions and disease *** its microenvironment is crucial for uncovering the molecular basis of physiological and pathological processes associated with the cell membrane,driving the development of bioanalytical toolkits capable of dynamically monitoring the cell surface *** the continuous advancement of functional nucleic acids and dynamic DNA nanotechnology,DNA nanodevices with controllable nanosized geometry,specific molecular recognition,and selective membrane-localization properties offer a versatile platform for probing the cell membrane *** this review,we summarize the current biosensing and membrane-anchoring mechanisms of DNA nanodevices and highlight their use in studying key cell membrane events,including membrane lipid dynamics,transmembrane transport,receptor dimerization,and signal ***,we discuss the challenges and potential future applications of DNA nanodevices in advancing cell membrane biology research and biomedical applications.

关键词： DNA nanodevice Cell membrane Cellular micro-environment Monitoring

Experimental study on performance of spring damping support structure system for large deformation tunnel in soft rock

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Underground Space 2024年第2期15卷 221-243页

作者： Jinfeng Xu Xiongyao Xie Zhou shi Wuqiang cai Dinglun Xu Chen Xu department of Geotechnical Engineering College of Civil EngineeringTongji UniversityShanghai 200092China Key Laboratory of Geotechnical and Underground Engineering Ministry of EducationTongji UniversityShanghai 200092China Zhaotong City Zhaolu Expressway Investment and development Co. ZhaotongYunnan Province 657000China Institute of Rock Mechanics Ningbo UniversityNingboZhejiang 315211China

According to the convergence confinement theory,it is an effective measure to control the large deformation of high ground stress in fractured soft rock tunnels by using yielding *** yielding support can be classified as either radial or circumferential yielding *** yielding support is achieved by transforming radial displacement into circumferential tangential closure without compromising the support capacity of the primary lining support *** on this,and inspired by the design principle of dampers,a yielding support structure system with spring damping elements as its core was developed,based on the connection characteristics of steel arches in highway tunnel,which can provide increasing support resistance in the yielding deformation *** the mechanical properties of spring damping elements were obtained through indoor axial pressure and flexural *** addition,according to these results with numerical calculations,the yielding support structure system with embedded spring damping elements can reduce the internal force of the support structure by approximately 10%and increase the area of the plastic zone of the surrounding rock by 11.23%,which can fully utilize the self-bearing capacity of surrounding rock and verify the effectiveness of circumferential yielding ***,the spring damping support structure system was designed with reference to the construction process of the tunnel excavated by drilling and blasting method,and the transformation of the spring damping element to spring damping support structure was *** on field test results,surrounding ground pressure for the yielding support optimization scheme was reduced by 40%and more evenly distributed,resulting in the successful application and a reduction in the construction cost of large deformation tunnels in soft rock.

关键词： Soft rock Highway tunnel Convergence confinement method Circumferential yielding support with spring damping element Numerical calculations Field test

Differentiation of embryoid-body cells derived from embryonic stem cells into hepatocytes in alginate microbeads in vitro

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Acta Pharmacologica Sinica 2007年第12期28卷 1924-1930页

作者： Sheng FANG,Yu-dong QIU,Liang MAO,Xiao-lei shi,de-cai YU,Yi-tao DING~2department of Hepatobiliary Surgery,Affiliated Drum Tower Hospital,Medical College of Nanjing University,Nanjing 210008,China department of Hepatobiliary Surgery Affiliated Drum Tower Hospital Medical College of Nanjing University Nanjing China

Aim:Embryonic stem (ES) cells are being widely investigated as a promisingsource of hepatocytes with their proliferative,renewable,and ***,controlled and scalable ES cell differentiation culture intofunctional hepatocytes is *** this study,we examined the differentiat-ing potential of embryoid-body cells derived from ES cells into hepatocytes inalginate microbeads containing exogenous growth factors in ***:.Embryoid bodies were formed from ES cells by suspension *** cultured for 5 d were treated with *** disaggregated cellswere encapsulated in alginate microbeads and stimulated with exogenous growthfactors to induce hepatic *** the course of cell differentiation,cellmorphology and viability were observed,and the expression patterns of somegenes of the hepatocyte were confirmed by *** immunofluorescenceanalysis revealed the expression of albumin (ALB) and cytokeratin-18 (CK18).Hepatocyte functional assays were confirmed by the secretion of ALB and ***:We showed that embryoid-body cells could maintain cell viability inalginate microbeads in *** also found that directed differentiated cellsexpressed several hepatocyte genes including α-fetoprotein (AFP),ALB,Cyp7a1,CK18,transthyretin (TTR) and tyrosine aminotransferase (TAT) and producedALB and urea in alginate *** directed differentiated cells expressedALB and CK18 proteins on d ***,embryoid-body cells could not formhepatocytes without exogenous growth factors in alginate ***:The differentiation of embryoid-body cells into hepatocytes con-taining exogenous growth factors in alginate microbeads gives rise to functionalhepatocytes and may develop scalable stem cell differentiation strategies forbioartificial livers and hepatocyte transplantation.

关键词： alginate cell culture encapsulation hepatocytes stem cell differentiation