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Rice molecular markers and genetic mapping:Current status and prospects

Journal of Integrative Agriculture 2017年第9期16卷 1879-1891页

作者： Ghulam Shabir Kashif Aslam Abdul Rehman Khan Muhammad shahid Hamid Manzoor Sibgha Noreen Mueen Alam Khan Muhammad Baber Muhammad Sabar shahid masood shah Muhammad Arif National Institute for Biotechnology and Genetic Engineering(NIBGE) Faisalabad 38000Pakistan Biotechnology Program Environmental SciencesCOMSA TS Institute of Information TechnologyAbbottabad 22010Pakistan Institute of Molecular Biology and Biotechnology Bahauddin Zakariya UniversityMultan 60000Pakistan Rice Research Institute Kala Shah Kaku 39020Pakistan Department of Bioinformatics and Biotechnology Government College UniversityFaisalabad 38000Pakistan Institute of Pure and Applied Biology Bahauddin Zakariya UniversityMultan 60000Pakistan Department of Plant Breeding and Genetics The Islamia University of BahawalpurBahawalpur 63100Pakistan National Center for Soybean Improvement Nanjing Agricultural UniversityNanjing 210095P.R.China

Dramatic changes in climatic conditions that supplement the biotic and abiotic stresses pose severe threat to the sustainable rice production and have made it a difficult task for rice molecular breeders to enhance production and productivity under these stress factors. The main focus of rice molecular breeders is to understand the fundamentals of molecular pathways involved in complex agronomic traits to increase the yield. The availability of complete rice genome sequence and recent improvements in rice genomics research has made it possible to detect and map accurately a large number of genes by using linkage to DNA markers. Linkage mapping is an effective approach to identify the genetic markers which are co-segregating with target traits within the family. The ideas of genetic diversity, quantitative trait locus（QTL） mapping, and marker-assisted selection（MAS） are evolving into more efficient concepts of linkage disequilibrium（LD） also called association mapping and genomic selection（GS）, respectively. The use of cost-effective DNA markers derived from the fine mapped position of the genes for important agronomic traits will provide opportunities for breeders to develop high-yielding, stress-resistant, and better quality rice cultivars. Here we focus on the progress of molecular marker technologies, their application in genetic mapping and evolution of association mapping techniques in rice.

关键词： genetic mapping molecular markers maker assisted selection Oryza sativa L quantitative trait loci

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Introgression of Drought Tolerance into Elite Basmati Rice Variety through Marker-Assisted Backcrossing

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Phyton-International Journal of Experimental Botany 2023年第5期92卷 1421-1438页

作者： Muhammad Sabar shahzad Amir Naveed shahid masood shah Abdul Rehman Khan Muhammad Musaddiq shah Tahir Awan Muhammad Ramzan Khan Zaheer Abbas Muhammad Arif National Institute for Biotechnology and Genetic Engineering(NIBGE) Faisalabad38000Pakistan Rice Research Institute Kala Shah Kaku39020Pakistan National Institute for Genomics and Advanced Biotechnology(NIGAB) Islamabad44000Pakistan Institute of Crop Sciences Chinese Academy of Agricultural SciencesBeijing100081China Department of Biotechnology COMSATS University IslamabadAbbottabad22020Pakistan Department of Biotechnology University of SialkotSialkot51310Pakistan Pakistan Institute of Engineering and Applied Sciences Islamabad44000Pakistan

Drought is one of the major abiotic threat to rice production in the context of climate *** Basmati is an elite,fine grain basmati rice variety grown in Punjab,*** to drought sensitive in nature,its yield has been facing an alarming situation in production because of gradual decrease in irrigated water for a couple of *** reported novel QTLs for drought tolerance were selected for incorporation into Super Basmati by employing marker assisted selection ***55419-04 with novel QTLs was used as a donor *** selection was performed by applying PCR based QTL linked SSR markers followed by recombinant selection by using 2-4 flanking *** selection was exercised by using polymorphic SSR markers for maximum genome recovery of the Super *** individuals homozygous at the target QTLs and with maximum background of Super Basmati at the rest of the non-target genome was selected for evaluation of drought *** drought stress conditions,the yields of all introgressed lines(ILs)were 44.2%-125.7%higher than recurrent *** superior ILs that are drought tolerant and very similar to Super Basmati in terms of agronomic and grain quality traits are marked for release as drought-tolerant varieties in arid regions or for use in breeding programs of high grain quality and drought-tolerant parents.

关键词： Drought QTL SSR markers basmati rice drought marker assisted breeding

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Potential of Plant Growth Regulators on Modulating Rooting of <i>Rosa centifolia</i>

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American Journal of Plant Sciences 2015年第5期6卷 659-665页

作者： Gulzar Akhtar Ahsan Akram Yasar Sajjad Rashad Mukhtar Balal Muhammad Adnan shahid Hasan Sardar Kaleem Naseem shahid masood shah Department of Horticulture University College of Agriculture University of Sargodha Pakistan Department of Environmental Sciences COMSATS Institute of Information Technology Abbottabad Pakistan Institute of Horticultural Sciences University of Agriculture Faisalabad Pakistan

Rosa centifolia is grown for its flowers which are used for essential oil extraction. It is vegetatively propagated through its cuttings which are difficult to root. This study was designed to increase the rooting percentage of cuttings by applying plant growth regulators (PGRs) with different levels. In total 31 treatments with different concentrations (450 ppm, 700 ppm and 950 ppm) of indole butyric acid (IBA), indole acetic acid (IAA), naphthalene acetic acid (NAA) alone, in combination and with same concentrations of 6-benzylamino purine (BAP) were used. Healthy similar sized cutting of R. centifolia was treated in solution of PGRs by quick dip method and planted in polythene bags. The data for shoot length, shoot dry weight, number of roots, root length and root dry weight were recorded. All three levels (450 ppm, 700 ppm and 950 ppm) of IBA alone produced maximum results in case of all parameters as compared to all other treatments. Among three levels of IBA, 450 ppm concentration produced maximum shoot length (10.67 cm), shoot dry weight (3.02 g), number of roots (14.00), root length (11.90 cm) and root dry weight (0.50 g). Lower concentrations of plant growth regulators produced better results as compared to higher concentrations.

关键词： Growth Regulator Rosa centifolia Auxins Rooting Shooting

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Enhancing Mild Cognitive Impairment Detection through Efficient Magnetic Resonance Image Analysis

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Computers, Materials & Continua 2024年第8期80卷 2081-2098页

作者： Atif Mehmood Zhonglong Zheng Rizwan Khan Ahmad Al Smadi Farah shahid shahid Iqbal Mutasem K.Alsmadi Yazeed Yasin Ghadi Syed Aziz shah Mostafa M.Ibrahim Department of Computer Science and Technology Zhejiang Normal UniversityJinhua321002China Zhejiang Institute of Photoelectronics&Zhejiang Institute for Advanced Light Source Zhejiang Normal UniversityJinhua321004China Department of Data Science and Artificial Intelligence Zarqa UniversityZarqa13100Jordan School of Chemical and Environmental Engineering College of ChemistryChemical Engineering andMaterials ScienceSoochow UniversitySuzhou215123China Department of Management Information Systems College of Applied Studies and Community ServiceImam Abdulrahman Bin Faisal UniversityDammam32244Saudi Arabia Department of Computer Science Al Ain UniversityAbu Dhabi999041United Arab Emirates Department of Electrical Engineering Faculty of EngineeringMinia UniversityMinia61519Egypt Healthcare Technology and Innovation Theme Faculty Research Centre for Intelligent HealthcareCoventry UniversityCoventryCV48BWUK

Neuroimaging has emerged over the last few decades as a crucial tool in diagnosing Alzheimer’s disease(AD).Mild cognitive impairment(MCI)is a condition that falls between the spectrum of normal cognitive function and ***,previous studies have mainly used handcrafted features to classify MCI,AD,and normal control(NC)*** paper focuses on using gray matter(GM)scans obtained through magnetic resonance imaging(MRI)for the diagnosis of individuals with MCI,AD,and *** improve classification performance,we developed two transfer learning strategies with data augmentation(i.e.,shear range,rotation,zoom range,channel shift).The first approach is a deep Siamese network(DSN),and the second approach involves using a cross-domain strategy with customized *** performed experiments on the Alzheimer’s Disease Neuroimaging Initiative(ADNI)dataset to evaluate the performance of our proposed *** experimental results demonstrate superior performance in classifying the three binary classification tasks:NC ***,NC ***,and MCI ***,we achieved a classification accuracy of 97.68%,94.25%,and 92.18%for the three cases,*** study proposes two transfer learning strategies with data augmentation to accurately diagnose MCI,AD,and normal control individuals using GM *** findings provide promising results for future research and clinical applications in the early detection and diagnosis of AD.

关键词： Alzheimer’s disease mild cognitive impairment normal control transfer learning classification augmentation

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Ion-acoustic waves with non-planar wavefronts

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Plasma Science and Technology 2024年第1期26卷 1-7页

作者： Shujaht BUKHARI Muhammad shahid Ata-ur RAHMAN Department of Physics The University of Azad Jummu and KashmirMuzaffarabad 13100Azad Kashmir Department of Physics Women University of Azad Jammu&KashmirBagh 12500Pakistan Department of Physics Islamia College PeshawerPeshawar 25120Pakistan

The ion-acoustic(IA) mode exhibiting various orbital angular momentum(OAM) states is examined in a plasma with drifting *** constituent plasma species are modeled with a non-gyrotropic Maxwellian distribution and discussion of dispersion relation and growth rate of twisted IA waves under various conditions is *** the domain of kinetic model,the twisted IA waves are characterized by Laguerre-Gaussian(LG) solutions,where plasma distribution function and electric field are decomposed into axial and azimuthal *** plasma response function is obtained under paraxial approximations and investigated for threshold condition of instability growth rate with helical electric field *** impact of an extra electron specie on the instability is demonstrated through a comparison of twisted waves for single and double electron species.

关键词： instability twist parameter wave excitation orbital angular momentum threshold limit

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Gravity-driven powder flow and the influence of external vibration on flow characteristics

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Particuology 2024年第5期88卷 201-209页

作者： Muhammad shahid Ansari Ratna Kumar Annabattula Sathyan Subbiah Department of Mechanical Engineering Indian Institute of Technology MadrasChennai 600036India

The controlled and homogeneous flow of dry granular powders through hoppers is essential for applications,namely,packaging of food grains,fertilizers and additive manufacturing processes such as directed energy deposition for better product *** of the major issues encountered in the granular flows through hoppers is flow stagnation due to the well-known arching ***-assisted granular flow through hoppers is one of the mechanisms used for better mass flow *** this work,the influence of external mechanical vibration on the powder flow is investigated experimentally and using discrete element ***,the mass flow rate through the hopper increases with an increase in vibration amplitude and then decreases,signifying the existence of an optimal amplitude of *** DEM simulations explained the underlying mechanisms for the existence of an optimal amplitude of vibration corresponding to the maximum mass flow rate.A range of vibration amplitudes from 0 mm to 3.5 mm is used to study the flow behaviour;the maximum flow of around 33 g/s to 35 g/s is observed for 0.75 mm to 1.25 mm vibration amplitude for the hopper-particle combination studied in this *** work also reports the influence of vibration frequency,hopper,and particle dimension on the flow *** research facilitates the effective use of mechanical vibration to enhance powder flow that can further be extended to non-spherical and multi-material particles.

关键词： Discrete element method Flow rate Granular flow Path tracking Vibration intensity

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Consequences of Rényi entropy on the thermal geometries and Hawking evaporation of topological dyonic dilaton black hole

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Communications in Theoretical Physics 2024年第2期76卷 102-110页

作者： Muhammad Yasir Xia Tiecheng Muhammad Usman shahid Chaudhary Department of Mathematics Shanghai University and Newtouch Center for Mathematics of Shanghai UniversityShanghai200444China Department of Natural Sciences and Humanities University of Engineering and Technology LahoreNew CampusPakistan

The thermodynamics of black holes(BHs)has had a profound impact on theoretical physics,providing insight into the nature of gravity,the quantum structure of spacetime and the fundamental laws governing the *** this study,we investigate thermal geometries and Hawking evaporation of the recently proposed topological dyonic dilaton BH in anti-de Sitter(Ad S)*** consider Rényi entropy and obtain the relations for pressure,heat capacity and Gibbs free energy and observe that the Rényi parameter and dilaton field play a vital role in the phase transition and stability of the ***,we use Weinhold,Ruppeiner and Hendi Panahiyah Eslam Momennia models to evaluate the scalar curvature of the BH and find out that the divergence points of the scalar curvature coincides with the zero of specific ***,using Stefan–Boltzmann law,we determine that the BH without a dilaton field evaporates far more quickly compared to the dilaton BH in Ad S space.

关键词： topological dyonic dilaton black hole phase transition thermal geometry Hawking evaporation

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Ovule number as a rising star for regulating seed yield: Hope or hype

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Journal of Integrative Agriculture 2024年第11期23卷 3623-3640页

作者： shahid Ullah Khan Ahmad Ali Sumbul Saeed Yonghai Fan Ali Shehazd Hameed Gul shah Fahad Kun Lu Integrative Science Center of Germplasm Creation in Western China (Chongqing) Science City and Southwest University College of Agronomy and BiotechnologySouthwest University Engineering Research Center of South Upland Agriculture Ministry of Education Women Medical and Dental College Khyber Medical University National Key Laboratory of Crop Genetic Improvement Huazhong Agricultural University School of Environment and Science Griffith University College of Agronomy and Biotechnology Southwest University Department of Agronomy Abdul Wali Khan University Mardan Department of Natural Sciences Lebanese American University

Rapeseed(Brassica napus L.) is the second most widely grown premium oilseed crop globally, mainly for its vegetable oil and protein meal. One of the main goals of breeders is producing high-yield rapeseed cultivars with sustainable production to meet the requirements of the fast-growing population. Besides the pod number, seeds per silique(SS), and thousand-seed weight(TSW), the ovule number(ON) is a decisive yield determining factor of individual plants and the final seed yield. In recent years, tremendous efforts have been made to dissect the genetic and molecular basis of these complex traits, but relatively few genes or loci controlling these traits have been reported thus far. This review highlights the updated information on the hormonal and molecular basis of ON and development in model plants(Arabidopsis thaliana). It also presents what is known about the hormonal, molecular, and genetic mechanism of ovule development and number, and bridges our understanding between the model plant species(A. thaliana) and cultivated species(B. napus). This report will open new pathways for primary and applied research in plant biology and benefit rapeseed breeding programs. This synopsis will stimulate research interest to further understand ovule number determination, its role in yield improvement, and its possible utilization in breeding programs.

关键词： Brassica napus ovule number genetics ovule development hormonal signaling

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Experimental Study on Heat Storage Properties Comparison of Paraffin/Metal Foams Phase Change Material Composites

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Journal of Thermal Science 2024年第2期33卷 469-478页

作者： Waqar AHMED Abid HUSSAIN Hanzla shahid Imran ALI Hafiz Muhammad ALI Department of Mechanical Engineering University of Engineering and TechnologyTaxila47080Pakistan Department of Mechanical Engineering Institute of Space TechnologyIslamabadPakistan Department of Mechanical Mechatronics and Manufacturing EngineeringUniversity of Engineering and Technology LahoreFaisalabad CampusPunjabPakistan Mechanical Engineering Department King Fahd University of Petroleum and MineralsDhahran31261Saudi Arabia Interdisciplinary Research Center for Renewable Energy and Power Systems(IRC-REPS) King Fahd University of Petroleum and MineralsDhahran31261Saudi Arabia

Heat storage properties of phase change materials(PCMs) are essential characteristics that perform a key role in thermal heat energy storage *** thermal properties of PCMs can be improved by developing metal foam/PCM *** addition of metal foam in PCMs has a significant effect on the thermal characteristics of *** this paper,the heat storage properties of two different metal foam/PCM composites were experimentally *** behavior of paraffin in metal foam(copper and iron-nickel)/paraffin composites concerning pure paraffin at a constant heat flux of 1000 W/m^(2) in three directions simultaneously(x,y,and z) was *** was infiltrated into copper and iron-nickel foams to develop composite materials which resulted in enhancing the thermal conductivity of the paraffin.A comparative analysis is made on the heat storage properties of paraffin in copper and iron-nickel foams/paraffin *** temperature distribution during the phase transition process is experimentally *** comparison indicates that temperature uniformity in copper foam/paraffin composite is better than in iron-nickel foam/paraffin composite and pure paraffin at the same heat *** results show that at heat flux of 1000 W/m^(2),the heat storage time for copper foam/paraffin composite is 20.63% of that of iron-nickel foam/paraffin composite.

关键词： heat storage capacity paraffin/metal foam composite temperature uniformity heat storage rate phase transition process

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Weathering and accumulation of trace elements in the soils of the Porali Plain, Balochistan: repercussions in agriculture

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Acta Geochimica 2024年第2期43卷 214-234页

作者： Maria Kaleem Erum Bashir shahid Naseem Tahir Rafique Bushra shahab Department of Geology University of KarachiKarachi 75270Pakistan Applied Chemistry Research Centre PCSIR Laboratories ComplexKarachi 75280Pakistan

This study is theﬁrst attempt to assess the nature of the soil,especially on the western side of the Porali Plain in Balochistan;a new emerging agriculture hub,using weathering and pollution indices supplemented by multi-variate analysis based on geochemical *** outcomes of this study are expected to help farmers in soil manage-ment and selecting suitable crops for the ***-ﬁve soil samples were collected,mainly from the arable land of the Porali *** drying and coning-quarter-ing,soil samples were analyzed for major and trace ele-ments using the XRF technique;sieving and hydrometric methods were employed for granulometric ***-mated data were analyzed using Excel,SPSS,and Surfer software to calculate various indices,correlation matrix,and spatial *** granulometric analysis showed that 76%of the samples belonged to loam types of soil,12%to sand type,and 8%to silt *** indices:CIA,CIW,PIA,PWI,WIP,CIX,and ICV were calculated to infer the level of *** indices reﬂect mod-erate to intense weathering;supported by K_(2)O/AI_(2)O_(3),Rb/K_(2)O,Rb/Ti,and Rb/Sr *** of the geo-ac-cumulation and Nemerow Pollution indices pinpoint rela-tively high concentrations of Pb,Ni,and Cr concentration in the *** correlation matrix and Principal Compo-nent Analysis show that the soil in this study area is mainly derived from the weathering of igneous rocks of Bela Ophiolite(Cretaceous age)and Jurassic sedimentary rocks of Mor Range having SEDEX/MVT type *** may result in the undesirable accumulation of certain trace elements which adversely affects crops.

关键词： Weathering indices Pollution indices Accumulation Repercussions Trace elements Multivariate analyses Porali Plain Balochistan

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